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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Website Status Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
T Cell ExTRECT
 
Resource Report
Resource Website
T Cell ExTRECT (RRID:SCR_027742) software toolkit, source code, software resource Software R package to calculate T cell fractions from WES data from hg19 or hg38 aligned genomes. T-cell, T cell receptor excision circle, WES data, hg19 or hg38 aligned genomes, NHLBI U54HL108460;
NCATS UL1TR000100;
NCI R21CA177519;
NCI P30CA023100;
NCI U01CA196406;
NLM T15LM011271;
NIH Office of the Director DP5OD017937;
NSF
PMID:34497419 Free, Available for download, Freely available SCR_027742 , T cell exome TREC, T cell exome T cell Receptor Excision Circle 2026-02-16 09:51:28 0
Oregon National Primate Research Center
 
Resource Report
Resource Website
100+ mentions
Oregon National Primate Research Center (RRID:SCR_008291) ONPRC institution Center that aims to develop biomedical technologies using nonhuman primate (NHP) models. Its goal is to uncover the root causes of various disease and disorders, unlock secrets of the brain, and unleash new methods of diagnostics and treatment. NPRC, NPRC Consortium, ORIP, enhancement, genetic, aids, animal, biomedical, brain, cancer, cure, delivery, depression, developmental, diabetes, diagnostic, disease, disorder, health, human, model, nonhuman, obesity, premature, primate, reproductive, research, scientific, stem cell, technology, therapy, treatment, vaccine is listed by: National Primate Research Center Consortium NIH Office of the Director P51 OD011092;
NIH Office of the Director U42 OD023038;
NIH Office of the Director U42 OD010426;
NIH Office of the Director R24 OD021324
Wikidata: Q7101277, Crossref funder ID: 100008143, nif-0000-24358, grid.410436.4, ISNI: 0000 0004 0619 6542 https://ror.org/05fcfqq67 SCR_008291 ONPRC 2026-02-14 02:01:40 108
nanoPOTS
 
Resource Report
Resource Website
1+ mentions
nanoPOTS (RRID:SCR_017129) instrument resource Nanodroplet processing platform for deep and quantitative proteome profiling of 10 to 100 mammalian cells. It enhances efficiency and recovery of sample processing by downscaling processing volumes. nanodroplet, processing, platform, quantitative, proteome, profiling, analysis, mammalian, cell, small, volume has parent organization: Pacific Northwest National Laboratory NIBIB R21 EB020976;
NCI R33 CA225248;
NIGMS P41 GM103493;
NIDDK UC4 DK104167;
NIDDK DP3 DK110844;
NIH Office Of The Director S10 OD016350;
JDRF
PMID:29491378 SCR_017129 2026-02-14 02:03:08 1
Drosophila RNAi Screening Center
 
Resource Report
Resource Website
1+ mentions
Drosophila RNAi Screening Center (RRID:SCR_000733) DRSC data or information resource, database Database that provides free online tools to users to allow the retrieval of information related to the Drosophila genome and allows access to genome-wide and related cell-based screening of Drosophila at Harvard Medical School (for a fee) . Tools available include SnapDragon, and RNAi designer, a heat map tool for viewing screen data, and gene and amplicon search and download tools. The DRSC mainly exists to provide Drosophila genome screening services, including help with assay development and optimization, data and image analysis, and planning of follow-up assays. genome, screening, drosophila, fly, insect, rnai has parent organization: Harvard University; Cambridge; United States NIH Office of the Director R24 OD011176 PMID:16381918 nif-0000-02846 https://orip.nih.gov/comparative-medicine/programs/genetic-biological-and-information-resources
http://flyRNAi.org/cgi-bin/RNAi_screens.pl
SCR_000733 Development of Validated Drosophila in vivo RNAi Models of Human Diseases 2026-02-14 02:06:01 2
Resource for Genetic Epidemiology Research on Adult Health and Aging
 
Resource Report
Resource Website
1+ mentions
Resource for Genetic Epidemiology Research on Adult Health and Aging (RRID:SCR_010472) GERA data or information resource, database Human genetics data from an immense (78,000) and ethnically diverse population available for secondary analysis to qualified researchers through the database of Genotypes and Phenotypes (dbGaP). It offers the opportunity to identify potential genetic risks and influences on a broad range of health conditions, particularly those related to aging. The GERA cohort is part of the Research Program on Genes, Environment, and Health (RPGEH), which includes more than 430,000 adult members of the Kaiser Permanente Northern California system. Data from this larger cohort include electronic medical records, behavioral and demographic information from surveys, and saliva samples from 200,000 participants obtained with informed consent for genomic and other analyses. The RPGEH database was made possible largely through early support from the Robert Wood Johnson Foundation to accelerate such health research. The genetic information in the GERA cohort translates into more than 55 billion bits of genetic data. Using newly developed techniques, the researchers conducted genome-wide scans to rapidly identify single nucleotide polymorphisms (SNPs) in the genomes of the people in the GERA cohort. These data will form the basis of genome-wide association studies (GWAS) that can look at hundreds of thousands to millions of SNPs at the same time. The RPGEH then combined the genetic data with information derived from Kaiser Permanente''s comprehensive longitudinal electronic medical records, as well as extensive survey data on participants'' health habits and backgrounds, providing researchers with an unparalleled research resource. As information is added to the Kaiser-UCSF database, the dbGaP database will also be updated. genotype, phenotype, genome-wide association study, saliva, dna, male, female, health condition, electronic medical record, single nucleotide polymorphism, adult human, late adult human, gene, genome has parent organization: NCBI database of Genotypes and Phenotypes (dbGap)
has parent organization: University of California at San Francisco; California; USA
Aging, Cardiovascular disease, Osteoarthritis, Depressive Disorder, Insomnia, Eye disease, Cancer, Diabetes NIMH ;
NIH Office of the Director ;
NIA AG036607
Application required, Non-commercial, Data Use Certification Agreement nlx_157735 SCR_010472 Genetic Epidemiology Research on Aging 2026-02-14 02:06:11 9
Microphysiology Systems Database
 
Resource Report
Resource Website
1+ mentions
Microphysiology Systems Database (RRID:SCR_021126) MPS-Db data or information resource, database Open source database used for analyzing and modeling compound interactions with human and animal organ models.Platform for experimental design, data management, and analysis, and to combine experimental data with reference data, to enable computational modeling. Resource for relating in vitro organ model data to multiple biochemical, preclinical, and clinical data sources on in vivo drug effects. Compound interactions, human organ models, animal organ models, analyzing interactions, modeling interactions, is used by: NIH Heal Project
is listed by: re3data.org
NCATS UH3 TR00503;
NIH Office of the Director S10 OD01226;
U.S. Environmental Protection Agency
PMID:28781990 Free, Freely available SCR_021126 MPS database 2026-02-14 02:06:26 4
Chimpanzee Management Program
 
Resource Report
Resource Website
1+ mentions
Chimpanzee Management Program (RRID:SCR_008377) organism supplier, material resource, biomaterial supply resource Center that supports long-term, cost-effective housing and maintenance at NCRR-supported facilities for chimpanzees. NCRR provides programmatic oversight of the facilities and ensures they comply with the Animal Welfare Act, and policies concerning laboratory animal care and use. animal, biomedical, care, chimpanzee, housing, laboratory, maintenance, management, research, transportation, usage has parent organization: National Center for Research Resources NIH Office of the Director nif-0000-25901 https://orip.nih.gov/comparative-medicine/programs/vertebrate-models http://www.ncrr.nih.gov/comparative_medicine/chimpanzee_management_program/ SCR_008377 ChiMP 2026-02-15 09:19:30 1
New Iberia Research Center
 
Resource Report
Resource Website
10+ mentions
New Iberia Research Center (RRID:SCR_008279) organism supplier, material resource, biomaterial supply resource NIRC maintains and provides available research facilities accredited by the Association for Assessment and Accreditation of Laboratory Animal Care (AAALAC) International; a ready source of chimpanzees of mixed ages and sex for use in biomedical and behavioral sciences, and also provides professional staff necessary to support investigators with their research needs. Current Research: Vaccine development and testing; pharmacokinetic, pharmacodynamic, preclinical safety, and efficacy studies. Services Provided: The University of Louisiana at Lafayette-New Iberia Research Center (UL Lafayette-NIRC) is an AAALAC-International-accredited nonhuman primate research facility dedicated to the support of basic and applied biomedical and behavioral research. All proposed programs must be approved by the presenting institution and the UL Lafayette-NIRC animal care and use committees. State-of-the-art biomedical support facilities are available that include access to ultrasound, radiography with automatic processor and computer imagery for diagnostic enhancement, and endoscopy and laparoscopy with video monitors, camera and color photo imagery. Diagnostic Laboratory: A 12,000-square-foot laboratory is available for investigators'' research support requirements. Capabilities within the laboratory include but are not limited to hematology, chemistry, microbiology, urinalysis, parasitology, and histology. Among the investigator support procedures are Ficoll gradient isolation of peripheral blood mononuclear cells, platelet aggregation profiles, nonhuman primate lymphocyte proliferation assay, and flow cytometry (lymphocyte enumeration). Emergency generator power is accessible in each laboratory unit and for all major instrumentation and critical freezers. Animals: The center cares for approximately 360 chimpanzees and 5,500 New and Old World species of nonhuman primates. In addition to chimpanzees, the following species of nonhuman primates are being bred at the center: Vervet monkey (Chlorocebus aethiops), cynomolgus macaque (Macaca fascicularis), pigtailed macaque (M. nemestrina), rhesus macaque (M. mulatta). endoscopy, animal, assay, behavioral, biomedical, blood, cell, chemistry, chimpanzee, chlorocebus aethiops, cynomolgus, cytometry, development, hematology, histology, imagery, laboratory, laparoscopy, lymphocyte, macaca fascicularis, macaca mulatta, macaca nemestrina, macaque, microbiology, monkey, mononuclear, nonhuman, parasitology, peripheral, pharmacodynamic, pharmacokinetic, photo, pigtailed, platelet, primate, radiography, research, rhesus, science, testing, ultrasound, urinalysis, vaccine, vervet has parent organization: University of Louisiana; Louisiana; USA NIH Office of the Director R24 OD010947;
NCRR U42 RR01 5087
nif-0000-24364 SCR_008279 NIRC 2026-02-15 09:19:29 41
Baboon Research Resouces
 
Resource Report
Resource Website
10+ mentions
Baboon Research Resouces (RRID:SCR_008333) organism supplier, material resource, biomaterial supply resource Center that conducts multidisciplinary studies on captive baboons and provides a resource of laboratory-born and laboratory-reared baboons for NIH-sponsored research programs. endogenous, environment, genetic, adult, animal, baboon, behavioral, biomedical, breeding, colony, diversity, infant, juvenile, laboratory, microorganism, model, nih, pathogen, pathology, population, research, science, sex, sponsored, vaccine is listed by: One Mind Biospecimen Bank Listing
has parent organization: University of Oklahoma; Oklahoma; USA
NIH Office of the Director P40 OD010988 nif-0000-25869 https://orip.nih.gov/comparative-medicine/programs/vertebrate-models http://www.ouhsc.edu/Compmed/BaboonResearchResources.asp SCR_008333 Baboon 2026-02-15 09:19:47 11
ChIP-X Enrichment Analysis 3
 
Resource Report
Resource Website
100+ mentions
ChIP-X Enrichment Analysis 3 (RRID:SCR_023159) ChEA3 web application, software resource Web based transcription factor enrichment analysis. Web server ranks TFs associated with user-submitted gene sets. ChEA3 background database contains collection of gene set libraries generated from multiple sources including TF-gene co-expression from RNA-seq studies, TF-target associations from ChIP-seq experiments, and TF-gene co-occurrence computed from crowd-submitted gene lists. Enrichment results from these distinct sources are integrated to generate composite rank that improves prediction of correct upstream TF compared to ranks produced by individual libraries. Transcription Factor, gene sets, transcription factor enrichment analysis, TF-gene co-expression from RNA-seq studies, TF-target associations from ChIP-seq experiments, TF-gene co-occurrence, prediction of correct upstream, NHLBI U54HL127624;
NCI U24CA224260;
NIGMS T32GM062754;
NIH Office of the Director OT3OD025467
PMID:31114921 Free, Freely available SCR_023159 ChIP-X Enrichment Analysis Version 3 (ChEA3) 2026-02-15 09:23:11 108
Juicer
 
Resource Report
Resource Website
100+ mentions
Juicer (RRID:SCR_017226) software application, data processing software, data analysis software, software resource Software platform for analyzing kilobase resolution Hi-C data. Open source tool for analyzing terabase scale Hi-C datasets. Allowes to transform raw sequence data into normalized contact maps. analysis, kilobase, resolution, Hi-C, data, terabase, dataset, transform, raw, sequence, normalized, contact, map has parent organization: Baylor College of Medicine; Houston; Texas NIH Office of the Director DP2 OD008540;
NHLBI U01 HL130010;
NSF PHY-1427654;
NHGRI HG006193;
Welch Foundation ;
Cancer Prevention Research Institute of Texas ;
NVIDIA Research Center Award ;
IBM University Challenge Award ;
Google Research Award ;
McNair Medical Institute Scholar Award ;
President Early Career Award in Science and Engineering ;
NHGRI HG003067;
PD Soros Fellowship
PMID:27467249 Free, Available for download, Freely available SCR_017226 2026-02-15 09:21:59 108
Ambystoma Genetic Stock Center
 
Resource Report
Resource Website
100+ mentions
Ambystoma Genetic Stock Center (RRID:SCR_006372) AGSC organism supplier, material resource, biomaterial supply resource Maintains breeding colony of Mexican axolotls (Ambystoma mexicanum) that distributes axolotl embryos, larvae, and adults to laboratories and classrooms throughout the United States and abroad. Their mission is to serve biology research programs and educators by providing experimental material and expertise and by encouraging and facilitating the exchange of information and ideas. RIN, Resource Information Network, embryo, larvae, adult, k-12 teacher, ambystoma, salamander, RRID Community Authority is used by: Integrated Animals
is listed by: One Mind Biospecimen Bank Listing
is listed by: Resource Information Network
has parent organization: University of Kentucky; Kentucky; USA
NIH Office of the Director P40 OD019794;
NIH Office of the Director R24 OD010435
PMID:16359543 Public. You must be affiliated with an IACUC-sanctioned university or other scientific program to receive animals. No animals will be sold for informal research or personal interest requests. nlx_152125 https://orip.nih.gov/comparative-medicine/programs/vertebrate-models http://www.ambystoma.org/genetic-stock-center SCR_006372 A. mexicanum stock center 2026-02-15 09:19:26 231
JAX Cre Repository
 
Resource Report
Resource Website
1+ mentions
JAX Cre Repository (RRID:SCR_005566) Cre Repository organism supplier, material resource, biomaterial supply resource Repository of Cre Driver lines and related information resources. Their services include analysis of Cre line excision function in both target and non-target tissues using Cre reporter lines and presenting the annotated data in the expression data portion of this website, http://cre.jax.org/data.html. cre, cre reporter, organism, cre driver line, cryopreserved, live, cre, cre expression, cre reporter strain, cre strain with floxed allele, image, strain, expression data, neurobiology is listed by: One Mind Biospecimen Bank Listing
is related to: CRE Driver Network
is related to: Allen Institute for Brain Science Transgenic Mouse Study
is related to: Pleiades Promoter Project: Genomic Resources Advancing Therapies for Brain Disorders
is related to: Recombinase (cre) Activity
has parent organization: Jackson Laboratory
Cre, Cre expression, Cre reporter strain, Cre strain with floxed allele NIH Blueprint for Neuroscience Research ;
NIDCR ;
NCRR RR03 2656;
NCRR RR026117;
NCRR RR001183;
NIH Office of the Director OD011190;
NIH Office of the Director OD010972;
NIH Office of the Director DE020052
Public nlx_144662 SCR_005566 Jackson Laboratory Cre Repository, Cre Driver Strain Resources, The Jackson Laboratory Cre Repository 2026-02-15 09:18:59 5
Washington National Primate Research Center
 
Resource Report
Resource Website
1+ mentions
Washington National Primate Research Center (RRID:SCR_002761) WaNPRC organism supplier, material resource, biomaterial supply resource Center that aims to provide an environment to support biomedical research directed towards human health issues and nonhuman primate health and biology. To meet this mission, the WaNPRC supports biomedical research activities, professional research staff, specifically bred and maintained nonhuman primate colonies, and dedicated facilities and equipment required for nonhuman primate research protocols. aids, clinical, disease, monkey, developmental biology, functional genomics, immunology, reproduction, biology, neurophysiology, infectious disease, transplantation, stem cell, biology, virology, disease model, animal model, neurobiology, neuroscience, systems biology, baboon, long-tailed macaque, rhesus monkey, live animal, macaca nemestrina, macaca fascicularis, macaca mulatta, papio cynocephalus, papio anubis is listed by: One Mind Biospecimen Bank Listing
has parent organization: University of Washington; Seattle; USA
has parent organization: National Center for Research Resources - Primate Resources
is parent organization of: WaNPRC Pathology and Tissue Program
NCRR ;
NIH Office of the Director P51 OD010425;
NIH Office of the Director U42 OD011123
Free nif-0000-24361 https://orip.nih.gov/comparative-medicine/programs/vertebrate-models http://www.wanprc.org/WaNPRC/index.php SCR_002761 2026-02-15 09:18:22 4
Cajun Ejector
 
Resource Report
Resource Website
Cajun Ejector (RRID:SCR_027846) instrument resource Shipping Dewar Positional Cooling Device (SDPCD) is 3-D printable vertical cooling device that can assist cryopreservation with various standard cooling rates by use with existing standard nitrogen vapor shipping dewars for on-site sperm cryopreservation for aquatic species.Device could hold 22 French straws (0.25-mL or 0.5-mL) and a quick-release ring design could eject straws directly into a canister inside a dewar by pressing a button after freezing. The final prototypes produced cooling rates of 1 to 68°C/min for 0.25-mL straws, and 3 to 37°C/min for 0.5-mL straws with a material cost of 3.5 USD for a single device NIH 3D, cooling device, open-hardware, cryopreservation, sperm cryopreservation, aquatic species, 3D print, NIH Office of the Director R24 OD010441;
NIH Officie of the Director R24 OD011120;
Louisiana State University ;
National Institute of Food and Agriculture ;
United States Department of Agriculture
PMID:36777239 Free, Available for download, Freely available, SCR_027846 , NIAID 3D Cajun Ejector, NIH 3D Cajun Ejector, Shipping Dewar Positional Cooling Device (SDPCD) 2026-02-14 02:10:09 0
Tetrahymena Stock Center
 
Resource Report
Resource Website
50+ mentions
Tetrahymena Stock Center (RRID:SCR_008362) TSC material resource, biomaterial supply resource Centralized repository and distribution site for variety of Tetrahymena strains and species. Maintains diverse array of wild type, mutant, and genetically engineered strains of T. thermophila, the most commonly used laboratory species, and variety of other species derived from both laboratory maintained stocks and wild isolates. All stocks are stored in liquid nitrogen to maintain genetic integrity and prevent senescence. In addition to providing worldwide access to strains currently in collection, TSC continually upgrades collection by accepting deposition of newly developed laboratory strains and well characterized wild isolates collected from clearly defined natural sites. RIN, Resource Information Network, eukaryota, genetics, biology, cell, cellular, culture, model, molecular, protozoan, repository, research, tetrahymena thermophila, RRID Community Authority is used by: Integrated Animals
is listed by: Resource Information Network
has parent organization: Cornell University; New York; USA
NIH Office of the Director P40 OD010964 nif-0000-25476 http://vivo.cornell.edu/individual/vivo/individual27605 SCR_008362 Resource Center For Tetrahymena Thermophila 2026-02-15 09:19:47 88
Mutant Mouse Resource and Research Center - Jackson Laboratory
 
Resource Report
Resource Website
10+ mentions
Mutant Mouse Resource and Research Center - Jackson Laboratory (RRID:SCR_016446) MMRRC JAX, JAX MMRRC, JAX MMR material resource, biomaterial supply resource Center for mutant mouse research and distribution. The objectives of the JAX MMRRC are to: identify and evaluate biomedically-significant mice, import/acquire and archive mouse strains, distribute mouse strains, and operate a control program to ensure genetic stability. mouse, mutation, clinical, research, biomedicine, genetics, gene, strain is organization facet of: Mutant Mouse Resource and Research Center NIH Office of the Director U42 OD010921 SCR_016446 JAX Mutant Mouse Resource and Research Center, Mutant Mouse Resource and Research Center - JAX, Jackson Laboratory MMRRC, Jackson Laboratory Mutant Mouse Resource and Research Center 2026-02-15 09:21:41 23
Mutant Mouse Resource and Research Center - University of North Carolina
 
Resource Report
Resource Website
1+ mentions
Mutant Mouse Resource and Research Center - University of North Carolina (RRID:SCR_016449) UNC MMRRC, MMRRC UNC, MMRRC UNCCH material resource, biomaterial supply resource Center that is a mouse cryoarchive and distribution center, which incorporates research goals that synergize with and extend the value of the resource. The goals of the UNC Chapel Hill center are to streamline and improve operating procedures, establish a comprehensive cryoarchive, develop and disseminate computational tools for mouse genotyping, and examine the effect of paternal age and epigenetics on mutation rate. mouse, cryogenic, mice, transgenic, knockout, genetic, mutant, mutation, epigenetics, research, animal is organization facet of: Mutant Mouse Resource and Research Center NIH Office of the Director U42 OD010924 SCR_016449 Mutant Mouse Resource and Research Center University of North Carolina, Mutant Mouse Resource and Research Center UNC, UNC Chapel Hill MMRRC, University of North Carolina Mutant Mouse Resource and Research Center, UNC Chapel Hill Mutant Mouse Resource and Research Center 2026-02-15 09:21:06 3
University of Nebraska Medical Center Translational Mouse Model Core Facility
 
Resource Report
Resource Website
University of Nebraska Medical Center Translational Mouse Model Core Facility (RRID:SCR_016452) material resource, biomaterial supply resource Center that conducts and supports research with mouse models. It also supplies mouse models to researchers. mouse, mice, translation, biomedicine has parent organization: University of Nebraska; Nebraska; USA NIH Office of the Director R24 OD018546 SCR_016452 Center for Humanized Mice, UNMC Translational Mouse Model Core Facility 2026-02-15 09:21:52 0
MARRVEL
 
Resource Report
Resource Website
10+ mentions
MARRVEL (RRID:SCR_016871) MARRVEL data analysis service, analysis service resource, database, production service resource, service resource, data or information resource Web tool to search multiple public variant databases simultaneously and provide a unified interface to facilitate the search process. Used for integration of human and model organism genetic resources to facilitate functional annotation of the human genome. Used for analysis of human genes and variants by cross-disciplinary integration of records available in public databases to facilitate clinical diagnosis and basic research. integration, database, model, genetic, resource, functional, annotation, genome, data, analysis, dataset, rare, variant, exploration, bio.tools uses: OMIM
uses: ClinVar
uses: DECIPHER
uses: Geno2MP
uses: Database of Genomic Variants
is used by: Hypothesis Center
is listed by: bio.tools
is listed by: Debian
NINDS 1U54NS093793;
NIH Office of the Director R24 OD022005;
The Robert and Janice McNair Foundation ;
Baylor College of Medicine Medical Scientist Training Program ;
NINDS U54 NS093793;
NIGMS R01 GM067858;
NIGMS R01 GM120033;
NSF DMS 1263932;
CPRIT RP170387;
Houston Endowment ;
Huffington Foundation ;
Belfer Foundation ;
T T Chao Family Foundation ;
NIGMS R01 GM067761;
NIGMS R01 GM084947;
NCRR R24 RR032668;
NIH Office of the Director R24 OD021997;
NCI P30 CA06516;
NHGRI U01 HG007709;
Simons Foundation
PMID:28502612 Free, Public, Freely available biotools:marrvel https://bio.tools/marrvel SCR_016871 Model organism Aggregated Resources for Rare Variant ExpLoration 2026-02-16 09:49:06 22

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