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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
gviz Resource Report Resource Website 10+ mentions |
gviz (RRID:SCR_024239) | software resource, software toolkit | Software R package to perform live annotation queries to Ensembl and UCSC and translates this to e.g. gene/transcript structures in viewports of the grid graphics package. | genomic data analyses, perform live annotation queries, | is listed by: Debian | Free, Available for download, Freely available, | OMICS_17191 | https://sources.debian.org/src/r-bioc-gviz/ | SCR_024239 | 2026-02-17 10:04:40 | 44 | ||||||||
|
psychometric Resource Report Resource Website 1+ mentions |
psychometric (RRID:SCR_024295) | software resource, software toolkit | Software R package for measurement theory, meta-analysis, reliability, item analysis, inter-rater reliability, classical utility, and correlation | psychometric theory, measurement theory, meta-analysis, reliability, item analysis, inter-rater reliability, classical utility, correlation | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/r-cran-psychometric/ | SCR_024295 | Applied Psychometric Theory | 2026-02-17 10:04:43 | 1 | ||||||||
|
rniftilib Resource Report Resource Website |
rniftilib (RRID:SCR_024296) | software resource, software toolkit | Software R package provides R-interface to the NIfTI reference implementation the niftilib C-library. | R-interface, NIfTI reference implementation, niftilib C-library, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/r-cran-rniftilib/ | SCR_024296 | 2026-02-17 10:04:08 | 0 | |||||||||
|
rook Resource Report Resource Website |
rook (RRID:SCR_024298) | software resource, software toolkit | Web server for R with documented API to interface between R and the server. The documentation contains the Rook specification and details for building and running Rook applications. | web server for R, building and running Rook applications, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/r-cran-rook/ | SCR_024298 | 2026-02-17 10:04:08 | 0 | |||||||||
|
robustrankaggreg Resource Report Resource Website 1+ mentions |
robustrankaggreg (RRID:SCR_024299) | RRA | software resource, software toolkit | Software R package for aggregating ranked lists, especially lists of genes. RRA method uses a probabilistic model for aggregation that is robust to noise and also facilitates the calculation of significance probabilities for all the elements in the final ranking. | aggregating ranked lists, lists of genes aggregation, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/r-cran-robustrankaggreg/ | SCR_024299 | Robust Rank Aggregation | 2026-02-17 10:04:43 | 3 | |||||||
|
rncl Resource Report Resource Website |
rncl (RRID:SCR_024290) | software resource, software toolkit | Software R package provides interface to Nexus Class Library which allows parsing of NEXUS, Newick and other phylogenetic tree file formats. Provides elements of file that can be used to build phylogenetic objects such as ape's 'phylo' or phylobase's 'phylo4(d)'. | interface to Nexus Class Library, parsing of NEXUS, parsing of Newick, parsing phylogenetic tree file formats, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/r-cran-rncl/ | SCR_024290 | 2026-02-17 10:04:42 | 0 | |||||||||
|
hms Resource Report Resource Website |
hms (RRID:SCR_024294) | software resource, software toolkit | Software R package implements S3 class for storing and formatting time-of-day values, based on the 'difftime' class. | storing and formatting time-of-day values, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/r-cran-hms/ | SCR_024294 | 2026-02-17 10:04:43 | 0 | |||||||||
|
sambamba Resource Report Resource Website 10+ mentions |
sambamba (RRID:SCR_024328) | software resource, software toolkit | Software tools for working with SAM/BAM data | working with SAM/BAM data, | is listed by: Debian | PMID:25697820 | Free, Available for download, Freely available, | OMICS_07586 | https://sources.debian.org/src/sambamba/ | SCR_024328 | 2026-02-17 10:04:08 | 43 | |||||||
|
seq-seq-pan Resource Report Resource Website |
seq-seq-pan (RRID:SCR_024343) | software resource, software toolkit | Software workflow for SEQuential alignment of SEQuences to build PAN-genome data structure and whole-genome-alignment. | SEQuential alignment, SEQuences, build PAN-genome data structure, | is listed by: Debian | PMID:29334898 | Free, Available for download, Freely available, | https://sources.debian.org/src/seq-seq-pan/ | SCR_024343 | 2026-02-17 10:04:45 | 0 | ||||||||
|
epibasix Resource Report Resource Website |
epibasix (RRID:SCR_024275) | software resource, software toolkit | Software R package for analysis of common epidemiological problems, ranging from sample size estimation, through 2x2 contingency table analysis and basic measures of agreement. | epidemiological problems analysis, sample size estimation, contingency table analysis, basic measures of agreement, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/r-cran-epibasix/ | SCR_024275 | epibasix: Elementary Epidemiological Functions for Epidemiology and Biostatistics, r-cran-epibasix | 2026-02-17 10:04:42 | 0 | ||||||||
|
incidence Resource Report Resource Website |
incidence (RRID:SCR_024276) | software resource, software toolkit | Software R package provides functions and classes to compute, handle and visualise incidence from dated events for defined time interval. Dates can be provided in various standard formats. | compute incidence, handle incidence, visualise incidence, dated events, defined time interval, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/r-cran-incidence/ | SCR_024276 | 2026-02-17 10:04:07 | 0 | |||||||||
|
genetics Resource Report Resource Website 1+ mentions |
genetics (RRID:SCR_024279) | software resource, software toolkit | Software R package for handling genetic data. Includes classes to represent genotypes and haplotypes at single markers up to multiple markers on multiple chromosomes. Function include allele frequencies, flagging homo/heterozygotes, flagging carriers of certain alleles, estimating and testing for Hardy-Weinberg disequilibrium, estimating and testing for linkage disequilibrium. | handling genetic data, allele frequencies, flagging homo/heterozygotes, flagging carriers of certain alleles, estimating and testing for Hardy-Weinberg disequilibrium, estimating and testing for linkage disequilibrium, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/r-cran-genetics/ | SCR_024279 | 2026-02-17 10:04:07 | 3 | |||||||||
|
readseq Resource Report Resource Website 1+ mentions |
readseq (RRID:SCR_024313) | software resource, software toolkit | Software package as Java based common sequence file format reader and sequence file manipulation. | Java, common sequence file format reader, sequence file manipulation, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/rdp-readseq/ | SCR_024313 | 2026-02-17 10:04:44 | 6 | |||||||||
|
rsvd Resource Report Resource Website |
rsvd (RRID:SCR_024303) | software resource, software toolkit | Software R package used to compute near optimal low-rank singular value decomposition of massive data sets with high accuracy. Provides several randomized matrix algorithms such as randomized singular value decomposition (rsvd), randomized principal component analysis (rpca), randomized robust principal component analysis (rrpca), randomized interpolative decomposition (rid), and the randomized CUR decomposition (rcur). In addition several plot functions are provided. | randomized singular value decomposition, singular value decomposition, compute optimal low-rank singular value decomposition, massive data sets, | is listed by: Debian | DOI:10.18637/jss.v089.i11 | Free, Available for download, Freely available, | https://sources.debian.org/src/r-cran-rsvd/ | SCR_024303 | randomized singular value decomposition | 2026-02-17 10:04:08 | 0 | |||||||
|
surveillance Resource Report Resource Website |
surveillance (RRID:SCR_024304) | software resource, software toolkit | Software R package for modeling and monitoring of time series of counts, proportions and categorical data, as well as for modeling of continuous-time point processes of epidemic phenomena. | modeling and monitoring of time series of counts, proportions and categorical data, modeling of continuous-time point processes, | is listed by: Debian | DOI:10.1007/s00180-007-0074-8 | Free, Available for download, Freely available, | https://sources.debian.org/src/r-cran-surveillance/ | SCR_024304 | 2026-02-17 10:04:43 | 0 | ||||||||
|
tsne Resource Report Resource Website 1+ mentions |
tsne (RRID:SCR_024305) | software resource, software toolkit | Softare R package as implementation of the t-SNE algorithm. | t-SNE algorithm implementation, R | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/r-cran-tsne/ | SCR_024305 | 2026-02-17 10:04:08 | 6 | |||||||||
|
rotl Resource Report Resource Website |
rotl (RRID:SCR_024306) | software resource, software toolkit | Software R package provides interface to the 'Open Tree of Life' API to retrieve phylogenetic trees, information about studies used to assemble the synthetic tree, and utilities to match taxonomic names to 'Open Tree identifiers'. The 'Open Tree of Life' aims at assembling comprehensive phylogenetic tree for all named species. | interface to 'Open Tree of Life' API, retrieve phylogenetic trees, retrieve information about studies used to assemble synthetic tree, retrieve utilities to match taxonomic names, | is listed by: Debian | Free, Available for download, Freely available, | OMICS_28401 | https://sources.debian.org/src/r-cran-rotl/ | SCR_024306 | 2026-02-17 10:04:43 | 0 | ||||||||
|
snowfall Resource Report Resource Website |
snowfall (RRID:SCR_024309) | software resource, software toolkit | Software R package usability wrapper around snow for easier development of parallel R programs. This package offers e.g. extended error checks, and additional functions. All functions work in sequential mode if no cluster is present or wished. Package is also designed as connector to the cluster management tool sfCluster, but can also used without it. | usability wrapper around snow, development of parallel R programs, extended error checks, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/r-cran-snowfall/ | SCR_024309 | 2026-02-17 10:04:44 | 0 | |||||||||
|
parmigene Resource Report Resource Website 1+ mentions |
parmigene (RRID:SCR_024285) | software resource, software toolkit | Software R package for parallel estimation of mutual information based on entropy estimates from k-nearest neighbors distances and algorithms for reconstruction of gene regulatory networks. | parallel estimation, mutual information, entropy estimates from k-nearest neighbors distances, reconstruction of gene regulatory networks, | is listed by: Debian | PMID:21531770 | Free, Available for download, Freely available, | OMICS_16887 | https://sources.debian.org/src/r-cran-parmigene/ | SCR_024285 | Parallel Mutual Information Estimation for Gene Network Reconstruction | 2026-02-17 10:04:08 | 1 | ||||||
|
pcapp Resource Report Resource Website 1+ mentions |
pcapp (RRID:SCR_024287) | software resource, software toolkit | Software R package provides functions for principal component analysis by projection pursuit. | principal component analysis, projection pursuit, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/r-cran-pcapp/ | SCR_024287 | 2026-02-17 10:04:43 | 1 |
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