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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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MAMA Resource Report Resource Website 50+ mentions |
MAMA (RRID:SCR_009270) | MAMA | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, web-based | is listed by: Genetic Analysis Software | nlx_154450 | SCR_009270 | Multivariate Association Mapping Algorithms | 2026-02-15 09:20:06 | 95 | ||||||||
|
MADMAPPER Resource Report Resource Website 10+ mentions |
MADMAPPER (RRID:SCR_009267) | MADMAPPER | software application, software resource | Suite of Python scripts for quality control of genetic markers, group analysis and inference of linear order of markers on linkage groups. MadMapper_RECBIT analyses raw marker scores for recombinant inbred lines. MadMapper_RECBIT generates pairwise distance scores for all markers, clusters based on pairwise distances, identifies genetic bins, assigns new markers to known linkage groups, validates allele calls, and assigns quality classes to each marker based on several criteria and cutoff values. MadMapper_XDELTA utilizes new algorithm, Minimum Entropy Approach and Best-Fit Extension, to infer linear order of markers. MadMapper_XDELTA analyzes two-dimensional matrices of all pairwise scores and finds best map that has minimal total sum of differences between adjacent cells (map with lowest entropy). MadMapper is freely available at http://www.atgc.org/XLinkage/MadMapper/ (entry from Genetic Analysis Software) | gene, genetic, genomic, python | is listed by: Genetic Analysis Software | nlx_154447 | SCR_009267 | 2026-02-15 09:20:00 | 13 | |||||||||
|
Marker And Gene Interpolation and Correlation Resource Report Resource Website 10+ mentions |
Marker And Gene Interpolation and Correlation (RRID:SCR_009268) | MaGIC | software application, software resource | Software program to generate targeted marker sets for genome-wide association studies. | gene, genetic, genomic, microsoft visual foxpro, windows |
is listed by: Genetic Analysis Software has parent organization: King's College London; London; United Kingdom |
PMID:15597550 | Free, Public | nlx_154448 | SCR_009268 | Marker And Gene Interpolation and Correlation | 2026-02-15 09:19:41 | 10 | ||||||
|
LTSOFT Resource Report Resource Website 1+ mentions |
LTSOFT (RRID:SCR_009266) | LTSOFT | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. A software suite designed to more powerfully leverage clinical-covariates such as age, bmi, smoking status, and gender when conducting case-control association studies. Including these covariates in standard regression models is not only suboptimal, but can in many instances reduce power. LTSOFT employs a liability threshold model approach that takes advantage of known epidemiological results to better model the covariates'' relationship to the phenotype of interest (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154445 | SCR_009266 | 2026-02-15 09:20:06 | 3 | ||||||||
|
LRP Resource Report Resource Website 1+ mentions |
LRP (RRID:SCR_009263) | LRP | software application, software resource | Software application that is part of the LINKAGE auxiliary program (entry from Genetic Analysis Software) | gene, genetic, genomic, c and pascal, unix, vms, ms-dos, os2 | is listed by: Genetic Analysis Software | nlx_154442 | SCR_009263 | Linkage Report Program | 2026-02-15 09:19:41 | 1 | ||||||||
|
L-POP Resource Report Resource Website 1+ mentions |
L-POP (RRID:SCR_009262) | L-POP | software application, software resource | Software application that detects population stratification in samples of unrelated individuals for whom a number of unlinked genotypes have been measured. (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic, ms-dos | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154441 | SCR_009262 | 2026-02-15 09:20:00 | 2 | ||||||||
|
LOKI Resource Report Resource Website 10+ mentions |
LOKI (RRID:SCR_009260) | LOKI | software application, software resource | Software program for analyses a quantitative trait observed on large pedigrees using Markov chain Monte Carlo multipoint linkage and segregation analysis. The trait may be determined by multiple loci. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix, (solaris 2.5, osf1 3.2, and others), linux, (2.0.30) | is listed by: Genetic Analysis Software | nlx_154439 | SCR_009260 | PANGAEA | 2026-02-15 09:20:09 | 29 | ||||||||
|
PROFILER Resource Report Resource Website 1000+ mentions |
PROFILER (RRID:SCR_009339) | PROFILER | software application, software resource | A flexible software tool to generate the probability distribution of joint multilocus genotypes defined by sets of individuals within the pedigree and sets of markers within the framework map. (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic, linux, unix, solaris |
is listed by: Genetic Analysis Software is listed by: SoftCite |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154552 | SCR_009339 | 2026-02-15 09:19:42 | 1294 | ||||||||
|
PREPLINK Resource Report Resource Website |
PREPLINK (RRID:SCR_009335) | PREPLINK | software application, software resource | Software application that is part of the LINKAGE auxiliary program (entry from Genetic Analysis Software) | gene, genetic, genomic, c and pascal, unix, vms, ms-dos, os2 | is listed by: Genetic Analysis Software | nlx_154547 | SCR_009335 | MAKE PEDfiles | 2026-02-15 09:19:42 | 0 | ||||||||
|
PREST Resource Report Resource Website 10+ mentions |
PREST (RRID:SCR_009336) | PREST | software application, software resource | Software program that detects pedigree errors in general outbred pedigrees by use of genome-screen data. When a potential pedigree error is detected, our companion program, ALTERTEST, determines which relationships are compatible with the observed genotype data. Both programs are freely available on the web. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, linux, unix, solaris | is listed by: Genetic Analysis Software | nlx_154548 | SCR_009336 | Pedigree RElationship Statistical Test | 2026-02-15 09:20:11 | 11 | ||||||||
|
POWTEST Resource Report Resource Website |
POWTEST (RRID:SCR_009334) | POWTEST | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. Excel spreadsheet to calculate power of affected sibpairs and TDT analyses (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154546 | SCR_009334 | 2026-02-15 09:20:01 | 0 | ||||||||
|
POOL STR Resource Report Resource Website |
POOL STR (RRID:SCR_009331) | POOL_STR | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. Software application (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154541 | SCR_009331 | POOLing alleles of Short Tandem Repeat markers | 2026-02-15 09:19:42 | 0 | |||||||
|
MLR-TAGGING Resource Report Resource Website |
MLR-TAGGING (RRID:SCR_009299) | MLR-TAGGING | software application, software resource | Software application that can be used for tagging SNP selection and genotype prediction (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154490 | SCR_009299 | Multivariate Linear Regression TAGGING | 2026-02-15 09:20:06 | 0 | ||||||||
|
POWERMARKER Resource Report Resource Website 500+ mentions |
POWERMARKER (RRID:SCR_009332) | POWERMARKER | software application, software resource | A comprehensive set of statistical methods for genetic marker data analysis, designed especially for SSR/SNP data analysis. PowerMarker builds a powerful user interface around both new and traditional statistical methods for population genetic analysis. See analysis to check out the versatility of PowerMarker. PowerMarker is also a 2D Viewer - which was used intensively for visualizing linkage disequilibria results. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154544 | SCR_009332 | 2026-02-15 09:20:11 | 623 | |||||||||
|
MMDRAWER Resource Report Resource Website |
MMDRAWER (RRID:SCR_009296) | MMDRAWER | software application, software resource | Software application to draw chromosome maps from the output of MAPMAKER/EXP. The output format is a Enhanced Metafile, which can be imported into most Windows-based presentation or document editing programs. (entry from Genetic Analysis Software) | gene, genetic, genomic, delphi, ms-windows | is listed by: Genetic Analysis Software | nlx_154487 | SCR_009296 | 2026-02-15 09:20:00 | 0 | |||||||||
|
POINTER Resource Report Resource Website 10+ mentions |
POINTER (RRID:SCR_009330) | POINTER | software application, software resource | Software application for complex segregation analysis with the mixed model (major locus and polygenes). (entry from Genetic Analysis Software) | gene, genetic, genomic, sun fortran, (especially, the command fsplit is needed), unix, sunos | is listed by: Genetic Analysis Software | nlx_154538 | SCR_009330 | 2026-02-15 09:20:01 | 23 | |||||||||
|
MINSAGE Resource Report Resource Website |
MINSAGE (RRID:SCR_009293) | MINSAGE | software application, software resource | Software application to calculate the sample size of genotypes minimally required to ensure that all alleles with a specified frequency at one locus are detected with a given confidence (entry from Genetic Analysis Software) | gene, genetic, genomic, ms-windows | is listed by: Genetic Analysis Software | nlx_154484 | SCR_009293 | MINimal SAmple size for GEnotypes | 2026-02-15 09:19:41 | 0 | ||||||||
|
PHASE Resource Report Resource Website 500+ mentions |
PHASE (RRID:SCR_009327) | PHASE | software application, software resource | Software program that implements a new statistical method for reconstructing haplotypes from population genotype data (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154533 | SCR_009327 | 2026-02-15 09:19:42 | 590 | |||||||||
|
PEDCHECK Resource Report Resource Website 50+ mentions |
PEDCHECK (RRID:SCR_009322) | PEDCHECK | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,20023. Software application for identifying all Mendelian inconsistencies in pedigree data. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, c++, unix, (sunos/solaris/compaq-alpha/sgi-irix/..) | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154516 | SCR_009322 | 2026-02-15 09:20:01 | 75 | ||||||||
|
PEDSTATS Resource Report Resource Website 10+ mentions |
PEDSTATS (RRID:SCR_009323) | PEDSTATS | software application, software resource | Software application for error checking and data summary of large or small data sets in QTDT, LINKAGE or MENDEL format. Checks for basic formatting errors, disconnected family groups, ancestor-descendant loops and can detect all Mendelian (including X-linked) inheritance errors in any pedigree without loops. Produces text and graphical (PDF) summaries of the family structure, trait and marker information of pedigree data and can break down summaries by sex, relative pair type or family. PEDSTATS also does Hardy-Weinberg testing using either a fast exact or asymptotic test and can summarize information in text or graphical PDF format. Additional features include a number of options for filtering data prior to summary and checks for inappropriate age or covariate values. Lastly, PEDSTATS can identify and trim uninformative individuals from a pedigree and rewrite the reorganized data to a new pedigree file. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, c++, linux, unix, ms-windows | is listed by: Genetic Analysis Software | nlx_154529 | SCR_009323 | 2026-02-15 09:19:42 | 30 |
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