Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
CLI for BioMAJ Resource Report Resource Website |
CLI for BioMAJ (RRID:SCR_023980) | software toolkit, software resource | Software package to use BioMAJ providing biomaj-cli. | is listed by: Debian | Free, Available for download, Freely available | https://sources.debian.org/src/biomaj3-cli/ | SCR_023980 | biomaj3-cli, biomaj-cli | 2026-02-15 09:23:16 | 0 | |||||||||
|
BCALM 2 Resource Report Resource Website 1+ mentions |
BCALM 2 (RRID:SCR_023975) | software application, source code, software resource | Software tool for constructing compacted de Bruijn graph from sequencing data.Parallel algorithm that distributes the input based on minimizer hashing technique, allowing for good balance of memory usage throughout its execution. | constructing compacted de Bruijn graph, sequencing data, | is listed by: Debian | PMID:27307618 | Free, Available for download, Freely available | OMICS_12164 | https://sources.debian.org/src/bcalm/ | SCR_023975 | bcalm | 2026-02-15 09:23:19 | 3 | ||||||
|
GCLib Resource Report Resource Website |
GCLib (RRID:SCR_024028) | software library, software toolkit, software resource | Software genomic C++ library of reusable code for bioinformatics projects.Provides core collection of data structures, trying to avoid unnecessary code dependencies of other heavy libraries, while minimizing build time. | reusable code for bioinformatics, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/gclib/ | SCR_024028 | gclib, genome-code-lib | 2026-02-15 09:23:20 | 0 | ||||||||
|
CAT and BAT Resource Report Resource Website 1+ mentions |
CAT and BAT (RRID:SCR_023988) | software toolkit, software resource | Software pipeline for taxonomic classification of contigs and metagenome-assembled genomes. Contig Annotation Tool and Bin Annotation Tool for the taxonomic classification of long DNA sequences and metagenome assembled genomes of both known and unknown microorganisms, as generated by contemporary metagenomics studies. | taxonomic classification, long DNA sequences, metagenome assembled genomes, known and unknown microorganisms, contemporary metagenomics studies, | is listed by: Debian | PMID:31640809 | Free, Available for download, Freely available | https://sources.debian.org/src/cat-bat/ | SCR_023988 | Bin Annotation Tool, Contig Annotation Tool, BAT, CAT, cat-bat, CAT/BAT | 2026-02-15 09:22:34 | 2 | |||||||
|
limereg Resource Report Resource Website |
limereg (RRID:SCR_024097) | software library, software toolkit, software resource | Open source commandline based application and/or software development library, that performs 2D, rigid image registration on two greyscale images and outputs either the transformation parameters or the registered image. | 2D, rigid image registration, greyscale images, transformation parameters, registered image, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/limereg/ | SCR_024097 | 2026-02-15 09:23:22 | 0 | |||||||||
|
Libxdf Resource Report Resource Website |
Libxdf (RRID:SCR_024096) | software library, software toolkit, software resource | Software cross-platform C++ library for loading multimodal, multi-rate signals stored in XDF files. Used in biosignal viewing application SigViewer and the LSL application XDFStreamer. Can also be integrated into other C++ applications. | C++ library, loading multimodal, multi-rate signals, SigViewer, XDFStreamer, biosignal viewing, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/libxdf/ https://xdf-modules.github.io/libxdf/ |
SCR_024096 | libxdf, Libxdf � a C++ library for loading XDF files | 2026-02-15 09:22:36 | 0 | ||||||||
|
CTDConverter Resource Report Resource Website |
CTDConverter (RRID:SCR_024007) | software library, software toolkit, software resource | Software Python scripts to convert CTD files into other formats such as Galaxy, CWL. | Python, scripts to convert CTD files, Galaxy format, CWL format | is listed by: Debian | Free, Available for download, Freely available | https://sources.debian.org/src/ctdconverter/ | SCR_024007 | ctdconverter | 2026-02-15 09:22:34 | 0 | ||||||||
|
FreeImage Resource Report Resource Website 1+ mentions |
FreeImage (RRID:SCR_024022) | software library, software toolkit, software resource | Open Source software library for developers who would like to support popular graphics image formats like PNG, BMP, JPEG, TIFF and others as needed by today's multimedia applications. | support graphics image formats, PNG, BMP, JPEG, TIFF | is listed by: Debian | Free, Available for download, Freely available | https://sources.debian.org/src/freeimage/ | SCR_024022 | freeimage | 2026-02-15 09:22:34 | 2 | ||||||||
|
GenomeTester4 Resource Report Resource Website 1+ mentions |
GenomeTester4 (RRID:SCR_024026) | software toolkit, software resource | Software toolkit for performing set operations - union, intersection and complement on k-mer lists. | performing set operations on k-mer lists, | is listed by: Debian | PMID:26640690 | Free, Available for download, Freely available, | OMICS_02363w | https://sources.debian.org/src/genometester/ | SCR_024026 | genometester | 2026-02-15 09:23:31 | 4 | ||||||
|
GDCM Resource Report Resource Website 1+ mentions |
GDCM (RRID:SCR_024027) | software library, software toolkit, software resource | GDCM includes file format definition and network communications protocol, both of which should be extended to provide full set of tools for researcher or small medical imaging vendor to interface with existing medical database.Implementation of DICOM standard designed to be open source so that researchers may access clinical data directly. | set of tools to interface with existing medical database, file format definition, network communications protocol, | is listed by: Debian | Free, Freely available | https://sources.debian.org/src/gdcm/ | SCR_024027 | Grassroots DICOM library, gdcm | 2026-02-15 09:22:34 | 1 | ||||||||
|
Augur Resource Report Resource Website 50+ mentions |
Augur (RRID:SCR_023964) | software toolkit, software resource | Software package to track evolution from sequence and serological data. Provides collection of commands which are designed to be composable into larger processing pipelines. | track evolution, sequence, serological data. | is listed by: Debian | Free, Available for download, Freely available | https://sources.debian.org/src/augur/ https://docs.nextstrain.org/projects/augur/en/stable/ |
SCR_023964 | augur | 2026-02-15 09:23:16 | 67 | ||||||||
|
EpiFire Resource Report Resource Website |
EpiFire (RRID:SCR_024017) | software library, software toolkit, software resource | Open source C++ library and application for contact network epidemiology. Application programming interface that models the spread of infectious disease in population and generates and manipulates networks of nodes and edges. | C++, contact network epidemiology, modeling spread of infectious diseases, | is listed by: Debian | PMID:22559915 | Free, Available for download, Freely available | OMICS_23387 | https://sources.debian.org/src/epifire/ | SCR_024017 | epifire | 2026-02-15 09:22:34 | 0 | ||||||
|
ExaBayes Resource Report Resource Website 1+ mentions |
ExaBayes (RRID:SCR_024019) | software toolkit, software resource | Software package for Bayesian tree inference. Used for large-scale analyses on computer clusters. | Bayesian tree inference, large-scale analyses, computer clusters, | is listed by: Debian | PMID:25135941 | Free, Available for download, Freely available | OMICS_10303 | https://sources.debian.org/src/exabayes/ | SCR_024019 | exabayes | 2026-02-15 09:23:20 | 7 | ||||||
|
libGDF Resource Report Resource Website |
libGDF (RRID:SCR_024075) | software library, software toolkit, software resource | Software library for processing of biomedical signals. Provides generic storage for biosignals, such as EEG, ECG, MEG. C++ implementation of GDF - " general dataformat for biosignals" version V2.20. | General Data Format, GDF, processing of biomedical signals, generic storage for biosignals, EEG, ECG, MEG, general dataformat for biosignals, C++, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/libgdf/ | SCR_024075 | libgdf, gdf-tools, libgdf-dev, octave-gdf | 2026-02-15 09:23:32 | 0 | ||||||||
|
JLODA Resource Report Resource Website |
JLODA (RRID:SCR_024076) | software library, software toolkit, software resource | Software Java library of data structures and algorithms.Provides some basic data structures and algorithms used by SplitsTree, Dendroscope and MEGAN. | Java library, data structures and algorithms library, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/libjloda-java/ | SCR_024076 | jloda, libjloda-java | 2026-02-15 09:22:35 | 0 | ||||||||
|
libmaus2 Resource Report Resource Website |
libmaus2 (RRID:SCR_024077) | software library, software toolkit, software resource | Software collection of data structures and algorithms. Contains I/O classes (single byte and UTF-8), bitio classes (input, output and various forms of bit level manipulation), text indexing classes (suffix and LCP array, fulltext and minute (FM), ...), BAM sequence alignment files input/output (simple and collating) and many lower level support classes. | data structures and algorithms collection, I/O classes, bitio classes, text indexing classes, BAM sequence alignment files, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/libmaus2/ | SCR_024077 | 2026-02-15 09:23:22 | 0 | |||||||||
|
Libchipcard Resource Report Resource Website |
Libchipcard (RRID:SCR_024071) | software library, software toolkit, software resource | Software library for generic access to chipcard readers and cards | generic access to chipcard readers and cards, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/libchipcard/ https://github.com/aqbanking/libchipcard |
SCR_024071 | libchipcard-dev, libchipcard, libchipcard-tools | 2026-02-15 09:23:32 | 0 | ||||||||
|
tabixpp Resource Report Resource Website |
tabixpp (RRID:SCR_024107) | software library, software toolkit, software resource | Software C++ wrapper around tabix project which abstracts some of the details of opening and jumping in tabix-indexed files.Wrapper to tabix indexer | C++ wrapper, tabix-indexed files, wrapper to tabix indexer, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/libtabixpp/ | SCR_024107 | libtabixpp | 2026-02-15 09:23:33 | 0 | ||||||||
|
Core Wrapper Resource Report Resource Website 1+ mentions |
Core Wrapper (RRID:SCR_024087) | software library, software toolkit, software resource | Software library that exports C++ mmCIF accessors to Python. | exports C++ mmCIF accessors to Python, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/librcsb-core-wrapper0-dev/ | SCR_024087 | CORE-WRAPPER, core-wrapper | 2026-02-15 09:23:33 | 1 | ||||||||
|
cyvcf2 Resource Report Resource Website 1+ mentions |
cyvcf2 (RRID:SCR_024000) | software library, software toolkit, software resource | Software Python library and software package for fast parsing and querying of VCF and BCF files and illustrate its speed, simplicity and utility. Used for variant analysis. | files parsing and querying, VCF files, BCF files, | is listed by: Debian | PMID:28165109 | Free, Available for download, Freely available | OMICS_20006 | https://sources.debian.org/src/cyvcf2/ | SCR_024000 | 2026-02-15 09:22:34 | 2 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the RRID Resources search. From here you can search through a compilation of resources used by RRID and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that RRID has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on RRID then you can log in from here to get additional features in RRID such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
