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http://www-rcf.usc.edu/~stram/tagSNPs.html
Software application (entry from Genetic Analysis Software)
Proper citation: TAGSNP (RRID:SCR_008623) Copy
http://www.genlink.wustl.edu/software
THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. Software application for constructing 2-d crossover-based map.
Proper citation: 2DMAP (RRID:SCR_009036) Copy
http://www.homepages.ed.ac.uk/pmckeigu/admixmap/index.html
General-purpose program for modelling admixture, using marker genotypes and trait data on a sample of individuals from an admixed population (such as African-Americans), where the markers have been chosen to have extreme differentials in allele frequencies between two or more of the ancestral populations between which admixture has occurred. The main difference between ADMIXMAP and classical programs for estimation of admixture such as ADMIX is that ADMIXMAP is based on a multilevel model for the distribution of individual admixture in the population and the stochastic variation of ancestry on hybrid chromosomes. This makes it possible to model the associations of ancestry between linked marker loci, and the association of a trait with individual admixture or with ancestry at a linked marker locus. (entry from Genetic Analysis Software)
Proper citation: ADMIXMAP (RRID:SCR_009035) Copy
https://www.hsph.harvard.edu/alkes-price/software/
Software application that uses genotyping data from SNP arrays for accurately inferring chromosomal segments of distinct continental ancestry in admixed populations, using dense genetic data. (entry from Genetic Analysis Software)
Proper citation: Hapmix (RRID:SCR_004203) Copy
https://scicrunch.org/scicrunch/data/source/nlx_154697-10/search?q=*&l=
A virtual database currently indexing software and tools from the SciCrunch Registry, Neuroimaging Informatics Tools and Resources Clearinghouse (NITRC), Visiome Platform, Cerebellar Platform, Brain Machine Interface Platform, and Genetic Analysis Software (GAS).
Proper citation: Integrated Software (RRID:SCR_004745) Copy
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