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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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SC3 Resource Report Resource Website 10+ mentions |
SC3 (RRID:SCR_015953) | sequence analysis software, software resource, software application, data analysis software, data processing software | Software tool for the unsupervised clustering of cells from single cell RNA-Seq experiments. SC3 is capable of identifying subclones from the transcriptomes of neoplastic cells collected from patients. | scRNA-seq, interactive, cluster, clustering, cell, single, rna, rnaseq, bio.tools |
is listed by: Debian is listed by: bio.tools |
Wellcome Trust 104710/Z/14/Z; Belgian Network DYSCO ; FRS-FNRS ; Belgian State Science Policy Office ; ARC (Action de Recherche Concerte) ; Wallonia-Brussels Federation ; EPSRC EP/N014529/1; Sanger Institute ; University of Edinburgh ; Bloodwise 13003; MRC ; Kay Kendall Leukaemia Fund ; Cambridge NIHR Biomedical Research Center ; Cambridge Experimental Cancer Medicine Centre ; Leukemia and Lymphoma Society of America 07037 |
PMID:28346451 | Free, Available for download | biotools:sc3 | https://bio.tools/sc3 | SCR_015953 | SC3 package, Single-Cell Consensus Clustering | 2026-02-12 09:46:23 | 20 | |||||
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Proteomics Identifications (PRIDE) Resource Report Resource Website 500+ mentions |
Proteomics Identifications (PRIDE) (RRID:SCR_003411) | PRIDE | data repository, service resource, storage service resource, database, data or information resource | Centralized, standards compliant, public data repository for proteomics data, including protein and peptide identifications, post-translational modifications and supporting spectral evidence. Originally it was developed to provide a common data exchange format and repository to support proteomics literature publications. This remit has grown with PRIDE, with the hope that PRIDE will provide a reference set of tissue-based identifications for use by the community. The future development of PRIDE has become closely linked to HUPO PSI. PRIDE encourages and welcomes direct user submissions of protein and peptide identification data to be published in peer-reviewed publications. Users may Browse public datasets, use PRIDE BioMart for custom queries, or download the data directly from the FTP site. PRIDE has been developed through a collaboration of the EMBL-EBI, Ghent University in Belgium, and the University of Manchester. | proteomics, protein, peptide, mass spectrometry, annotation, standard, spectra, protein-protein interaction, amino acid, amino acid sequence, post-translational modification, biomart, bio.tools |
is used by: ProteomeXchange is used by: BioSample Database at EBI is recommended by: NIDDK Information Network (dkNET) is listed by: Biositemaps is listed by: re3data.org is listed by: bio.tools is listed by: Debian is related to: HUPO Proteomics Standards Initiative is related to: ProteomeXchange has parent organization: European Bioinformatics Institute |
Wellcome Trust WT085949MA; European Union FP7 LSHG-CT-2006-036814; European Union FP7 260558; European Union FP7 262067; European Union FP7 202272; BBSRC BB/I024204/1 |
PMID:23203882 PMID:19662629 |
Free, Available for download, Freely available | nif-0000-03336, biotools:pride, r3d100011515 | https://www.ebi.ac.uk/pride/archive/ https://bio.tools/pride https://doi.org/10.17616/R3F330 |
SCR_003411 | PRoteomics IDEntifications database, PRIDE Archive - proteomics data repository, PRIDE Archive, PRIDE, Proteomics Identifications, Proteomics Identifications (PRIDE), PRoteomics IDEntifications database (PRIDE) | 2026-02-12 09:43:35 | 642 | ||||
|
GeneDB Resource Report Resource Website 100+ mentions |
GeneDB (RRID:SCR_002774) | GDB, GeneDB | training resource, workshop, database, data or information resource, data set | Database of genomes at various stages of completion, from early access to partial genomes with automatic annotation through to complete genomes with extensive manual curation. Its primary goals are: 1) to provide reliable access to the latest sequence data and annotation/curation for the whole range of organisms sequenced by the Pathogen group, and 2) to develop the website and other tools to aid the community in accessing and obtaining the maximum value from these data. | schizosaccharomyces, pombe, leishmania, major, trypanosoma, brucei, functional, genomics, proteomics, apicomplexan, protozoa, kinetoplastid, parasitic, helminths, bacteria, parasite vector, virus, FASEB list |
is related to: TriTrypDB is related to: Integrated Manually Extracted Annotation has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom is parent organization of: GeneDB Gmorsitans is parent organization of: GeneDB Lmajor is parent organization of: GeneDB Tbrucei is parent organization of: GeneDB Pfalciparum is parent organization of: GeneDB Spombe |
Wellcome Trust | PMID:14681429 | Free | nif-0000-02880, r3d100010626 | https://doi.org/10.17616/R31C8X | http://old.genedb.org/, http://www.gdb.org/ | SCR_002774 | GDB, Gene DB | 2026-02-12 09:43:27 | 429 | |||
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Wellcome Trust Centre for Human Genetics Resource Report Resource Website 10+ mentions |
Wellcome Trust Centre for Human Genetics (RRID:SCR_003307) | WTCHG | data or information resource, portal, topical portal | An international leader in genetics, genomics and structural biology, and research institute of the Nuffield Department of Medicine at the University of Oxford, whose objective is to extend our understanding on how genetic inheritance makes us who we are in order to gain a clearer insight into mechanisms of health and disease. Looking across all three billion letters of the human genetic code, they aim to pinpoint variant spellings and discover how they increase or decrease an individual's risk of falling ill. They collaborate with research teams across the world on a number of large-scale studies in these areas. | genetics, genomics, structural biology |
has parent organization: University of Oxford; Oxford; United Kingdom is parent organization of: Happy is parent organization of: Wellcome-CTC Mouse Strain SNP Genotype Set is parent organization of: CHAoS is parent organization of: Platypus is parent organization of: Stampy is parent organization of: GWAMA is parent organization of: cortex var |
University of Oxford; Oxford; United Kingdom ; Wellcome Trust ; other sponsors |
Free, Freely available | nif-0000-31897 | SCR_003307 | 2026-02-12 09:43:34 | 49 | |||||||
|
SAMTOOLS Resource Report Resource Website 10000+ mentions |
SAMTOOLS (RRID:SCR_002105) | SAMtools | sequence analysis software, software toolkit, software resource, software application, data analysis software, data processing software | Original SAMTOOLS package has been split into three separate repositories including Samtools, BCFtools and HTSlib. Samtools for manipulating next generation sequencing data used for reading, writing, editing, indexing,viewing nucleotide alignments in SAM,BAM,CRAM format. BCFtools used for reading, writing BCF2,VCF, gVCF files and calling, filtering, summarising SNP and short indel sequence variants. HTSlib used for reading, writing high throughput sequencing data. | Samtools, BCFtools, HTSlib, next generation sequencing, nucleotide alignments, sequence variant, genomic, c, perl, read, alignment, nucleotide, sequence, data, process, sam, bam, cram, vcf, bcf, bio.tools |
is used by: deFuse is used by: Short Read Sequence Typing for Bacterial Pathogens is used by: ROSE is used by: Fcirc is listed by: OMICtools is listed by: Genetic Analysis Software is listed by: SNVer is listed by: Debian is listed by: bio.tools is listed by: SoftCite is related to: Platypus is related to: shovill is related to: pysam has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom is parent organization of: SAMtools/BCFtools is required by: RelocaTE is required by: Wessim is required by: SL-quant is required by: smMIPfil |
Wellcome Trust ; NHGRI U54 HG002750 |
PMID:19505943 PMID:21903627 DOI:10.1093/bioinformatics/btp352 |
Free, Available for download, Freely available | SCR_018682, biotools:samtools, OMICS_01074, nlx_154607, OMICS_00090 | https://github.com/samtools/samtools https://github.com/samtools/htslib https://bio.tools/samtools https://sources.debian.org/src/samtools/ |
http://samtools.sourceforge.net/ | SCR_002105 | samtools, Samtools, Sequence Alignment Map TOOLS, SAMtools, SAM tools | 2026-02-12 09:43:18 | 30156 | |||
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ALSPAC Resource Report Resource Website 100+ mentions |
ALSPAC (RRID:SCR_007260) | ALSPAC | data or information resource, portal, project portal | A long-term health research project which follows pregnant women and their offspring in a continuous health and developmental study. More than 14,000 mothers enrolled during pregnancy in 1991 and 1992, and the health and development of their children has been followed in great detail. The ALSPAC families have provided a vast amount of genetic and environmental information over the years which can be made available to researchers globally. | longitudinal, study, parent, child, health, research, mother, development, research, disease, genetic, environmental | has parent organization: University of Bristol; Bristol; United Kingdom | UK Medical Research Council ; Wellcome Trust ; University of Bristol |
Available to the research community | nif-0000-30224 | SCR_007260 | The Avon Longitudinal Study of Parents and Children, Avon Longitudinal Study of Parents and Children | 2026-02-12 09:44:32 | 460 | ||||||
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Predicting Language Outcome and Recovery After Stroke (PLORAS) Resource Report Resource Website |
Predicting Language Outcome and Recovery After Stroke (PLORAS) (RRID:SCR_014498) | data or information resource, portal, project portal | A research project investigating the difficulties of recovering language after stroke (aphasia). The overall aim of the study is to give future stroke survivors accurate predictions of their aphasia recovery by creating clinical tools and discerning why some patients recover from aphasia better than others. | stroke, aphasia, language, project portal, aphasia recovery, language outcome, recovery prediction | Aphasia, Stroke | Wellcome Trust ; Stroke Association |
Public | SCR_014498 | 2026-02-12 09:45:54 | 0 | |||||||||
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Recognition of Errors in Assemblies using Paired Reads Resource Report Resource Website 1+ mentions |
Recognition of Errors in Assemblies using Paired Reads (RRID:SCR_017625) | REAPR | software application, software resource, data processing software | Software tool to identify errors in genome assemblies without need for reference sequence. Can be used in any stage of assembly pipeline to automatically break incorrect scaffolds and flag other errors in assembly for manual inspection. Reports mis-assemblies and other warnings, and produces new broken assembly based on error calls. | Identify, error, genome, assembly, without, reference, sequence, incorrect, scaffold, error |
is listed by: Debian is listed by: OMICtools has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom |
European Union ; Wellcome Trust ; JSPS KAKENHI |
PMID:23710727 | Free, Available for download, Freely available | OMICS_04068 | https://sources.debian.org/src/reapr/ | SCR_017625 | 2026-02-12 09:46:55 | 2 | |||||
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hMRI-toolbox Resource Report Resource Website 10+ mentions |
hMRI-toolbox (RRID:SCR_017682) | software toolkit, software application, software resource, data processing software | Software toolbox for quantitative MRI in neuroscience and clinical research. Open source and flexible tool for qMRI data handling and processing. Allows estimation of high quality multi parameter qMRI maps followed by spatial registration in common space for statistical analysis. | Quantitative, MRI, data, processing, multi, parameter, qMRI, map, spatial, registration, statistical, analysis, histology, longitudinal, relaxation, rate R1 and R2, proton, density, magnetisation, transfer, MT saturation |
is related to: MATLAB is related to: SPM |
European Structural and Investment Fund ; European Regional Development Fund ; Belgian Walloon Government ; European Research Council ; Swiss State Secretariat for Education ; Research and Innovation ; German Research Foundation ; Swiss National Science Foundation ; Leenaards Foundation ; Roger De Spoelberch Foundation ; Wellcome Trust ; Emory Universitys Research Council ; Swedish Research Council |
DOI:10.1016/j.neuroimage.2019.01.029 | Free, Available for download, Freely available | https://github.com/hMRI-group/hMRI-toolbox | SCR_017682 | 2026-02-12 09:46:56 | 33 | |||||||
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BALBES Resource Report Resource Website 1+ mentions |
BALBES (RRID:SCR_018763) | standalone software, software toolkit, software application, software resource | Software system for solving protein structures using x-ray crystallographic data. Automatic molecular replacement pipeline for molecular replacement in CCP4. Integrates into one system all components necessary for solving crystal structure by Molecular Replacement. System is automated so that it needs no user intervention when running combination of jobs such as model searching, molecular replacement and refinement. | Molecular replacement pipeline, protein structure, solving protein structure, x-ray crystallographic data, molecular replacement, molecular replacement in CCP4, solving crystal structure, automated system, no user intervention, model searching, refinement |
uses: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) is related to: CCP4 |
Wellcome Trust ; NIGMS R01 GM069758 |
PMID:18094476 | Free, Available for download, Freely available | SCR_018763 | 2026-02-12 09:47:05 | 1 | ||||||||
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Wellcome Images Resource Report Resource Website |
Wellcome Images (RRID:SCR_004181) | Wellcome Images | data repository, service resource, image repository, storage service resource, database, data or information resource, image collection | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 9, 2023.Digital collection of images, with themes ranging from medical and social history to contemporary healthcare and biomedical science. The collection contains historical images from the Wellcome Library collections, Tibetan Buddhist paintings, ancient Sanskrit manuscripts written on palm leaves, beautifully illuminated Persian books and much more. The Biomedical Collection holds over 40 000 high-quality images from the clinical and biomedical sciences. Selected from the UK''s leading teaching hospitals and research institutions, it covers disease, surgery, general healthcare, sciences from genetics to neuroscience including the full range of imaging techniques. They are always looking for new high quality biomedical images from scientific researchers, clinical photographers and artists in any field of science or medicine. As a contributor you retain your original material and copyright, and receive commission and full credit each time your images are used. The annual Wellcome Images awards (previously known as Biomedical Images Awards) reward contributors for their outstanding work and winners are chosen by a panel of experts. The resulting public exhibitions are always extremely popular and receive widespread acclaim. All images on the Wellcome Images site are available free for use in: * private study and non-commercial research * examination papers * criticism and review, this applies only where there are no multiple copies made * theses submitted by a student at a higher or further education institution for the purposes of securing a degree * personal use by private individuals | biomedical, clinical, disease, surgery, healthcare, genetics, neuroscience, imaging, science, medicine, history, painting, manuscript | Wellcome Trust | THIS RESOURCE IS NO LONGER IN SERVICE | r3d100010779, nlx_143611 | https://doi.org/10.17616/R3HS58 | SCR_004181 | 2026-02-12 09:43:45 | 0 | |||||||
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GeneDB Tbrucei Resource Report Resource Website 10+ mentions |
GeneDB Tbrucei (RRID:SCR_004786) | GeneDB_Tbrucei, GeneDB Tbrucei, GeneDB T. brucei | analysis service resource, service resource, production service resource, database, data analysis service, data or information resource | Database of the most recent sequence updates and annotations for the T. brucei genome. New annotations are constantly being added to keep up with published manuscripts and feedback from the Trypanosomatid research community. You may search by Protein Length, Molecular Mass, Gene Type, Date, Location, Protein Targeting, Transmembrane Helices, Product, GO, EC, Pfam ID, Curation and Comments, and Dbxrefs. BLAST and other tools are available. T. brucei possesses a two-unit genome, a nuclear genome and a mitochondrial (kinetoplast) genome with a total estimated size of 35Mb/haploid genome. The nuclear genome is split into three classes of chromosomes according to their size on pulsed-field gel electrophoresis, 11 pairs of megabase chromosomes (0.9-5.7 Mb), intermediate (300-900 kb) and minichromosomes (50-100 kb). The T. brucei genome contains a ~0.5Mb segmental duplication affecting chromosomes 4 and 8, which is responsible for some 75 gene duplicates unique to this species. A comparative chromosome map of the duplicons can be accessed here (PubmedID 18036214). Protozoan parasites within the species Trypanosoma brucei are the etiological agent of human sleeping sickness and Nagana in animals. Infections are limited to patches of sub-Saharan Africa where insects vectors of the Glossina genus are endemic. The most recent estimates indicate between 50,000 - 70,000 human cases currently exist, with 17 000 new cases each year (WHO Factsheet, 2006). In collaboration with GeneDB, the EuPathDB genomic sequence data and annotations are regularly deposited on TriTrypDB where they can be integrated with other datasets and queried using customized queries. | blast, sequence, annotation, genome |
is used by: NIF Data Federation is related to: AmiGO is related to: TriTrypDB has parent organization: GeneDB |
Wellcome Trust | PMID:16020726 | nlx_78417 | SCR_004786 | Trypanosoma brucei TREU927 homepage on GeneDB, Trypanosoma brucei TREU927 on GeneDB | 2026-02-12 09:43:58 | 17 | ||||||
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Open Source Brain Resource Report Resource Website 10+ mentions |
Open Source Brain (RRID:SCR_001393) | OSB | data repository, service resource, storage service resource, database, data or information resource | A resource for sharing and collaboratively developing computational models of neural systems. While models can be submitted and developed in any format, the use of open standards such as NeuroML and PyNN is encouraged, to ensure transparency, modularity, accessibility and cross simulator portability. OSB will provide advanced facilities to analyze, visualize and transform models in these formats, and to connect researchers interested in models of specific neurons, brain regions and disease states. Research themes include: Basal ganglia modelling, Cerebellar Granule cell modelling, Cerebellar modelling, Hippocampal modelling, Neocortical modelling, Whole brain models. Additional themes are welcome. | model, neuroml, pynn, computational model, neural system, neuron, disease, data analysis service, visualization, 3d explorer, network, ion channel distribution, ion channel, microcircuit |
uses: PyNN uses: NeuroML is used by: NIF Data Federation is listed by: Integrated Models is related to: neuroConstruct is related to: NWB Explorer is related to: Allen Institute for Brain Science has parent organization: University College London; London; United Kingdom |
Wellcome Trust | Free, Freely Available | nlx_152590 | SCR_001393 | OpenSourceBrain | 2026-02-12 09:43:09 | 26 | ||||||
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LOHHLA Resource Report Resource Website 1+ mentions |
LOHHLA (RRID:SCR_023690) | software resource, software application, data analysis software, data processing software | Software tool to evaluate HLA loss using next-generation sequencing data. Computational tool to determine HLA allele-specific copy number from sequencing data. | evaluate HLA loss, Human Leukocyte Antigen loss, next-generation sequencing data, determine HLA allele-specific copy number, sequencing data, | Cancer Research UK ; University College London Hospitals Biomedical Research Centre ; European Union Seventh Framework Programme ; UK Medical Research Council ; Wellcome Trust ; Rosetrees Trust ; NovoNordisk Foundation ; Prostate Cancer Foundation ; Breast Cancer Research Foundation ; European Research Council ; Marie Curie Network PloidyNet |
PMID:29107330 | Restricted | SCR_023690 | Loss Of Heterozygosity in Human Leukocyte Antigen | 2026-02-12 09:47:59 | 6 | ||||||||
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Virtual Fly Brain Resource Report Resource Website 10+ mentions |
Virtual Fly Brain (RRID:SCR_004229) | VFB | data or information resource, atlas, neurons, expression | An interactive tool for neurobiologists to explore the detailed neuroanatomy, neuron connectivity and gene expression of the adult Drosophila melanogaster brain. | Drosophila, brain, neurons, innervation patterns, gene expression, transgene expression, phenotypes, neuroanatomy, neurobiology |
uses: Drosophila Gross Anatomy Ontology uses: Drosophila Development Ontology is related to: FlyBase is related to: Flycircuit is related to: Janelia Research has parent organization: University of Edinburgh; Scotland; United Kingdom has parent organization: University of Cambridge; Cambridge; United Kingdom has parent organization: European Bioinformatics Institute |
Wellcome Trust | PMID:22180411 | nlx_143644 | http://www.virtualflybrain.org/site/vfb_site/home.htm | SCR_004229 | VirtualFlyBrain.org, VFB, Virtual Fly Brain | 2026-02-12 09:43:47 | 45 | |||||
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Roslin Wellcome Trust Tick Cell Biobank Resource Report Resource Website 1+ mentions |
Roslin Wellcome Trust Tick Cell Biobank (RRID:SCR_004228) | Roslin Wellcome Trust Tick Cell Biobank | material resource, cell repository, biomaterial supply resource | The world''s largest collection of tick cell lines, enabling scientists to carry out advanced research. This biobank is establishing a collection of all the continuous cell lines derived from ixodid and argasid ticks of medical and veterinary importance available worldwide now and in future. Ticks are blood feeding arthropods which transmit many human and animal diseases. Research into prevention and cure of these diseases, which are caused by viruses, bacteria and protozoa, is greatly assisted by the use of cell culture systems which enable study of both how tick cells function, and how and why ticks transmit these disease-causing pathogens. Cell lines will always be shipped to recipient laboratories as growing cultures, since we cannot guarantee successful resuscitation of frozen stabilates. Tick cells in culture can tolerate the range of temperatures experienced during transit by air for up to a week. Training: We will provide training in tick cell line care and maintenance. This is an essential component of successful transfer of tick cells to, and their establishment in, laboratories with little or no previous experience of tick cell culture. Recipient scientists (preferably the person who will actually look after the cells) can visit the biobank for between 2 days and 2 weeks, depending on their level of previous experience, to be trained in the specific approach and methods for tick cell cultivation. Establishment of new cell lines: In response to requests and on receipt of suitable starting material (engorged female or moulting nymphal ticks), we will attempt to establish new cell lines from tick species or strains which are not already represented in the collection. Deposition of new tick cell lines: We invite researchers anywhere in the world who have established new tick cell lines to deposit samples for safekeeping free of charge and, if requested, for distribution alongside the existing biobank portfolio. |
is listed by: One Mind Biospecimen Bank Listing has parent organization: University of Edinburgh; Scotland; United Kingdom |
Wellcome Trust | Public | nlx_24657 | http://tickcells.roslin.ac.uk/ | SCR_004228 | 2026-02-12 09:43:45 | 2 | |||||||
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ShARM Resource Report Resource Website 1+ mentions |
ShARM (RRID:SCR_003120) | ShARM | tissue bank, material resource, biomaterial supply resource | A not for profit organization to accelerate research into aging by sharing resources: providing access to cost and time effective, aged murine tissue through a biorepository and database of live ageing colonies, as well as promoting the networking of researchers and dissemination of knowledge through its online collaborative environment; MiCEPACE. ShARM will provide valuable resources for the scientific community while helping to reduce the number of animals used in vital research into aging. The biobank of tissue and networking facility will enable scientists to access shared research material and data. By making use of collective resources, the number of individual animals required in research experiments can be minimized. The project also has the added value of helping to reduce the costs of research by connecting scientists, pooling resource and combining knowledge. ShARM works in partnership with MRC Harwell and the Centre for Intergrated Research into Musculoskeletal Ageing (CIMA). | data sharing, female, male, gut, heart, kidney, livers, lung, mammary fat, muscle, pancreas, bat, bladder, bone, brain, femur, skin, spleen, thymus, tibia, wat, aged tissue, aged mouse, murine model | is listed by: One Mind Biospecimen Bank Listing | Aging, Control, Young control | Wellcome Trust | PMID:24085518 | Free, Freely available | nlx_156767 | SCR_003120 | Shard Ageing Research Models | 2026-02-12 09:43:31 | 4 | ||||
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GOtcha Resource Report Resource Website 1+ mentions |
GOtcha (RRID:SCR_005790) | GOtcha | service resource, analysis service resource, production service resource, data analysis service | GOtcha provides a prediction of a set of GO terms that can be associated with a given query sequence. Each term is scored independently and the scores calibrated against reference searches to give an accurate percentage likelihood of correctness. These results can be displayed graphically. Why is GOtcha different to what is already out there and why should you be using it? * GOtcha uses a method where it combines information from many search hits, up to and including E-values that are normally discarded. This gives much better sensitivity than other methods. * GOtcha provides a score for each individual term, not just the leaf term or branch. This allows the discrimination between confident assignments that one would find at a more general level and the more specific terms that one would have lower confidence in. * The scores GOtcha provides are calibrated to give a real estimate of correctness. This is expressed as a percentage, giving a result that non-experts are comfortable in interpreting. * GOtcha provides graphical output that gives an overview of the confidence in, or potential alternatives for, particular GO term assignments. The tool is currently web-based; contact David Martin for details of the standalone version. Platform: Online tool | function, protein, prediction, genome, annotation, gene, statistical analysis |
is listed by: Gene Ontology Tools is related to: Gene Ontology has parent organization: University of Dundee; Scotland; United Kingdom |
Wellcome Trust 060269; European Union fifth framework QLRI-CT-2000-00127 |
PMID:15550167 | Free for academic use | nlx_149269 | http://www.compbio.dundee.ac.uk/Software/GOtcha/gotcha.html | SCR_005790 | 2026-02-12 09:44:07 | 1 | |||||
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Expression Profiler Resource Report Resource Website 1+ mentions |
Expression Profiler (RRID:SCR_005821) | Expression Profiler | service resource, analysis service resource, production service resource, data analysis service | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 2, 2016. The EP:GO browser is built into EBI's Expression Profiler, a set of tools for clustering, analysis and visualization of gene expression and other genomic data. With it, you can search for GO terms and identify gene associations for a node, with or without associated subnodes, for the organism of your choice. | other analysis, cluster, analysis, visualization, gene expression, genomic, gene ontology, gene association, microarray, protein-protein interaction, gene, bio.tools |
is listed by: Gene Ontology Tools is listed by: Debian is listed by: bio.tools is related to: Gene Ontology has parent organization: European Bioinformatics Institute |
European Union ; Wellcome Trust ; Estonian Science Foundation 5724; Estonian Science Foundation 5722 |
PMID:15215431 | THIS RESOURCE IS NO LONGER IN SERVICE | biotools:expression_profiler, nlx_149323 | https://bio.tools/expression_profiler | SCR_005821 | Expression Profiler at the EBI | 2026-02-12 09:44:11 | 6 | ||||
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Database of Spatially Interacting Motifs in Proteins Resource Report Resource Website |
Database of Spatially Interacting Motifs in Proteins (RRID:SCR_007735) | iMOTdb | data or information resource, database | Comprehensive collection of spatially interacting motifs in proteins. Interacting motif database lists interacting motifs that are identified for all structural entries in PDB. Conserved patterns or finger prints are identified for individual structural entries and also grouped together for reporting common motifs shared among all superfamily members. | Conserved patterns, spatially interacting motifs, finger prints, structural entries, protein | has parent organization: Tata Institute of Fundamental Research; Mumbai; India | Wellcome Trust | PMID:16381866 | Free, Freely available | nif-0000-03018, SCR_008194, nif-0000-21218 | SCR_007735 | 2026-02-12 09:44:35 | 0 |
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