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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Website Status Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
EchinoBase
 
Resource Report
Resource Website
100+ mentions
EchinoBase (RRID:SCR_013732) data or information resource, database Database that provide a genomic information and comparative genomics platform on sea urchins and related echinoderms. It provide collection of information to directly support experimental work on these useful research models in cell and developmental biology. sea urchins, echinoderms, genome, FASEB list NIH Office of the Director P40 OD010959 PMID:19010966 Free, Public https://orip.nih.gov/comparative-medicine/programs/genetic-biological-and-information-resources SCR_013732 SpBase, Echinoderm genomic database, Gene Library Resource for the Sea Urchin Strongylocentrotus purpuratus, Sea Urchin Genome Database, Echino Base 2026-02-11 10:58:49 104
University of California at Berkeley QB3 Genomics Core Facility
 
Resource Report
Resource Website
50+ mentions
University of California at Berkeley QB3 Genomics Core Facility (RRID:SCR_022170) core facility, access service resource, service resource Partnership between Vincent J. Coates Genomics Sequencing Laboratory,Functional Genomics Laboratory, and Computational Genomics Resource Laboratory. Offers consultation on experimental design and data analysis, full suite of technical services related to high throughput sequencing and genomics experiments, and access to high performance computational infrastructure. USEDit, ABRF, genomics research, high throughput sequencing and genomics experiments, high performance computational infrastructure access is listed by: ABRF CoreMarketplace
is related to: USEDit
has parent organization: University of California at Berkeley; Berkeley; USA
NIH Office of the Director OD018174 ABRF_1346 https://coremarketplace.org/?FacilityID=1346 SCR_022170 University of California at Berkeley UCB-QB3 Genomics, UCB-QB3 Genomics 2026-02-11 11:00:30 82
University of Nebraska Medical Center Advanced Microscopy Core Facility
 
Resource Report
Resource Website
10+ mentions
University of Nebraska Medical Center Advanced Microscopy Core Facility (RRID:SCR_022467) core facility, access service resource, service resource Facility houses imaging technologies ranging from super resolution (~ 0.120 um to 0.020 um) to microscopic (~ 0.300 um) to mesoscopic (~ 1 um) biomedical imaging. Imaging specialists provide training and/or actively assist researchers collecting images across imaging instrumentation. Instrumentation includes Zeiss ELYRA PS.1 is inverted microscope for super resolution (SR) structured illumination microscopy (SIM) and single molecule localization microscopy (SMLM) including, PhotoActivated Localization Microscopy (PALM) using photo switchable/convertible fluorescent proteins, Total Internal Reflection Fluorescence (TIRF) and STochastic Optical Reconstruction Microscopy (STORM);Zeiss 800 CLSM with Airyscan is an inverted microscope dramatically increasing conventional confocal image resolution to ~180 nm using Airyscan technology; Zeiss 710 LSM is inverted microscope supporting most basic imaging applications, multi channel and spectral, co localization, live cell, 3D, and time series imaging; Zeiss Celldiscoverer 7 is widefield imaging system for automated, time lapse imaging of live samples; Zeiss Axioscan 7 is high performance whole slide scanning system for fluorescence, brightfield, and polarization imaging;Miltenyi Biotec Ultramicroscope II Light Sheet fluorescence microscope (LSFM) extends fluorescent imaging into true 3D, large scale volumetric imaging of intact tissues, organs, and small organisms. AMCF also houses several high-end data analysis workstations with premier image analysis software including HALO (Indica Labs) and IMARIS (Oxford Instruments) facilitating data rendering, analyses, and presentation options. USEDit, ABRF, biomedical imaging, microscopy is listed by: ABRF CoreMarketplace
is related to: USEDit
has parent organization: University of Nebraska; Nebraska; USA
NIGMS GM103427;
NIGMS GM106397;
NCI CA036727;
NCRR RR027301;
NIH Office of the Director OD030486
open ABRF_1375 https://coremarketplace.org/?FacilityID=1375&citation=1 SCR_022467 UNMC Advanced Microscopy Core Facility 2026-02-11 11:00:23 18
University of Texas Southwestern Medical Center Quantitative Light Microscopy Core Facility
 
Resource Report
Resource Website
1+ mentions
University of Texas Southwestern Medical Center Quantitative Light Microscopy Core Facility (RRID:SCR_022605) QLMC core facility, access service resource, service resource Provides access to variety of microscope modalities including laser scanning and spinning disk confocal, multiphoton, wide field deconvolution, CFP/YFP FRET, TIRF, single molecule imaging, and more. Offers customized microscopy training, advise and help with sample preparation, image quantification, and offer basic microscope maintenance. Can streamline your data handling and image visualization as well as automate your image analysis workflow through customized Fiji macros. Light microscopy, laser scanning and spinning disk confocal, multiphoton, wide field deconvolution, CFP/YFP FRET, TIRF, single molecule imaging, ABRF, USEDit is related to: USEDit
has parent organization: University of Texas Southwestern Medical Center; Texas; USA
NCRR 1S10 RR029731;
NIH Office of the Director 1S10 OD021684;
NIH Office of the Director 1S10OD028630;
NCI 1P30 CA142543
Restricted SCR_022605 Quantitative Light Microscopy Core 2026-02-11 11:00:29 2
La Jolla Institute for Immunology Next Generation Sequencing Core Facility
 
Resource Report
Resource Website
1+ mentions
La Jolla Institute for Immunology Next Generation Sequencing Core Facility (RRID:SCR_023107) core facility, access service resource, service resource Core provides latest sequencing technology combined with Institute's expansive bioinformatics capabilities. Provides instrumentation including Illumina Miseq, Covaris Model E220, NovaSeq 6000, Agilent 2200 Tapestation, Beckman Coulter Biomek FXP, HiSeq 2500. ABRF, USEDit, Next Generation Sequencing, sequencing technology is related to: USEDit
has parent organization: La Jolla Institute for Immunology
NIH Office of the Director S10OD025052;
NIH Office of the Director S10OD016262
Open SCR_023107 La Jolla Institute for Immunology Next Generation Sequencing Facility 2026-02-11 11:00:35 7
University of Texas MD Anderson Cancer Center Proteomics Core Facility
 
Resource Report
Resource Website
University of Texas MD Anderson Cancer Center Proteomics Core Facility (RRID:SCR_017731) core facility, access service resource, service resource Facility provides mass spectrometry analysis of proteins. Provides access to mass spectrometry based proteomics technologies and services including Protein Identification, Molecular Weight Determination, Quantitative Protein Analysis, Post-translational Modification Analysis, LC or LC-MS Analysis, Equipment Usage, Additional Data Analysis:Bioinformatics, statistics, pathway analysis and Assistance preparing materials for manuscripts or grants.Consultations for custom assays for other MS Services are also available. Mass, spectrometry, analysis, protein, proteomics, service NCI P30 CA016672;
NIH Office of the Director S10 OD012304
Open ABRF_186 SCR_017731 Proteomics Facility 2026-02-11 10:59:43 0
University of Delaware CBCB Bioinformatics Data Science Core Facility
 
Resource Report
Resource Website
10+ mentions
University of Delaware CBCB Bioinformatics Data Science Core Facility (RRID:SCR_017696) core facility, access service resource, service resource CBCB Bioinformatics Data Science Core builds upon infrastructure of the Center for Bioinformatics and Computational Biology. Delaware Biotechnology Institute , Delaware Data Science Institute, and Protein Information Resource. Core helps with planning your research or analyzing your current data. Services:Consultation and Collaboration, Proposal Assistance,Training, Bioinformatics Software, Computational Hardware, Database and Web Services, Next Gen Analysis, Custom Analysis. ABRF, USEDit, CBCB, Bioinformatics, core, Delaware, Biotechnology, Institute, data, analyzing, service, data science is listed by: ABRF CoreMarketplace
is related to: USEDit
has parent organization: University of Delaware; Delaware; USA
NIGMS P20GM103446;
NIH Office of the Director S10OD028725
Open SCR_017712, ABRF_82 SCR_017696 Center for Bioinformatics and Computational Biology Bioinformatics Core, CBCB Bioinformatics Core 2026-02-11 10:59:45 33
University of Delaware BioImaging Center Core Facility
 
Resource Report
Resource Website
1+ mentions
University of Delaware BioImaging Center Core Facility (RRID:SCR_017814) core facility, access service resource, service resource Microscopy facility that houses equipment including confocal microscopes: LSM780 confocal microscope (Located at CBBI),LSM880 confocal microscope (Located at DBI 117),electron microscopes and their accessory instrumentation:Thermo Scientific Apreo VS SEM microscope,Hitachi S-4700, Leica EM ACE600 and Tousimis Autosamdri-815B,CX7 high content analysis system. Our staff has technical expertise across different microscopy platforms and methodologies. Microscopy, bioimaging, confocal, electron, microscope, analysis, service, core is listed by: ABRF CoreMarketplace
has parent organization: University of Delaware; Delaware; USA
NIGMS P20 GM103446;
NSF IIA 1301765;
State of Delaware ;
NCRR S10 RR027273;
NIH Office of the Director S10 OD016361;
NIH Office of the Director S10 OD025165;
NIGMS P20 GM113125
Open ABRF_537 https://coremarketplace.org/?FacilityID=537&citation=1 SCR_017814 Delaware University BioImaging Center Core Facility, University of Delaware Bio-Imaging Center 2026-02-11 10:59:41 1
Drugmonizome
 
Resource Report
Resource Website
1+ mentions
Drugmonizome (RRID:SCR_024821) data or information resource, database Database with search engine for querying annotated sets of drugs and small molecules for performing drug set enrichment analysis. annotated sets of drugs and small molecules, searching of annotated sets of drugs and small molecules, drugs, small molecules, NCI U24CA224260;
NHLBI U54HL127624;
NIH Office of the Director OT2OD030160
PMID:33787872 Free, Freely available SCR_024821 2026-02-11 11:00:56 1
Daphnia Atlas
 
Resource Report
Resource Website
1+ mentions
Daphnia Atlas (RRID:SCR_024913) reference atlas, atlas, data or information resource Whole organism atlas utilizing 2D and 3D imaging. Atlas at cellular resolution serves as foundation for characterization of tissue and cellular change in Daphnia. Whole organism atlas, Daphnia, characterization of tissue and cellular change, 2D imaging, 3D imaging, Penn State Human Health and Environment Seed Grant ;
Pennsylvania Department of Health Commonwealth Universal Research Enhancement Program Grant ;
NIH Office of the Director R24OD18559;
European Unions Horizon 2020
DOI:10.1101/2022.03.09.483544 Free, Freely available, SCR_024913 2026-02-11 11:00:57 1
New York University School of Medicine Langone Health Experimental Pathology Research Laboratory Core Facility
 
Resource Report
Resource Website
10+ mentions
New York University School of Medicine Langone Health Experimental Pathology Research Laboratory Core Facility (RRID:SCR_017928) core facility, access service resource, service resource Core provides services, access to instruments, and training to facilitate production of animal tissue samples for morphological and molecular analyses. Supports multiplex immunofluorescence staining, RNA in situ hybridization (ISH), and imaging analysis. Services include tissue preparation, processing, and sectioning, as well as histochemistry and immunohistochemistry of fresh, frozen, and fixed animal tissues, can optimize and validate commercial or proprietary antibodies for chromogenic or fluorescence-based immunohistochemistry including seven-color multiplexing.Provides access to database listing antibodies that have been tested in lab to date and are currently in stock.Offers basic imaging resources and digital whole-slide scanning of stained tissue sections, which allows researchers to view their slides online at their convenience.Researchers can also rent our self-service instruments. These include embedding station, microtome, cryostat, and vibratome. Provides access to brightfield and fluorescence upright and dissecting microscopes,laser capture microdissection scope, and high-throughput multispectral imaging system.To reserve time on instrument, faculty, staff, and investigators must be registered in iLab. Experimental, pathology, animal, tissue, production, instrument, morphological, molecular, analysis, immunofluorescence, staining, RNA, in situ, hybridization, imaging, analysis, sectioning, tissue, histochemistry, immunochemistry, antibody, listing, imaging, service, core, ABRF, USEDit is listed by: ABRF CoreMarketplace
is related to: USEDit
has parent organization: New York University School of Medicine; New York; USA
NIH Office of the Director S10 OD021747 Open ABRF_823 https://coremarketplace.org/?FacilityID=823&citation=1 https://med.nyu.edu/research/scientific-cores-shared-resources/experimental-pathology-research-laboratory SCR_017928 NYU Langon Experimental Pathology Research Laboratory, New York University School of Medicine Langone Health Experimental Pathology Research Laboratory 2026-02-11 10:59:43 40
Baylor College of Medicine RNA In Situ Hybridization Core Facility
 
Resource Report
Resource Website
Baylor College of Medicine RNA In Situ Hybridization Core Facility (RRID:SCR_017856) core facility, access service resource, service resource Core performs non-radioactive, RNA in situ hybridization (ISH) on tissue sections. Provides services including: collecting animal tissue specimens, preparation of frozen and paraffin sections, preparation of RNA probes from customer templates, conducting high-throughput ISH, and documentation and quantification of expression patterns by microscopy. We also do X-gal and Cresyl Violet staining on sections. For human studies, customers must provide tissue sections. RNA, in situ, hybridization, non radioactive, tissue, selection, collection, animal, speciment, preparation, frozen, paraffin, RNA, probe, custom, template, high, throughput, ISH, exrpession, pattern, documentation, microscopy, X-gal, Crystal Violet, staining, section, service, core NIH Office of the Director S10 OD016167;
NICHD U54 HD083092
Open ABRF_671 SCR_017856 RNA In Situ Hybridization 2026-02-11 10:59:41 0
New York University School of Medicine Langone Health Precision Immunology Laboratory Core Facility
 
Resource Report
Resource Website
1+ mentions
New York University School of Medicine Langone Health Precision Immunology Laboratory Core Facility (RRID:SCR_017936) core facility, access service resource, service resource THIS RESOURCE IS NO LONGER IN SERVICE. Documented on November 20,2025. Core to study immune cell phenotype and function, characterizes antitumor immune responses, determines mechanisms of immune escape and evasion, and develops biomarkers that predict patient outcomes or possible toxicities. Offers services for immune monitoring,provides expert knowledge that guides choice of technologies used for study, coordinates purchase, quality control, and use of reagents. Stand-alone services include high-quality cell processing and storage to support correlative studies. These services allow convenient batched analysis of trial samples.Staff purifies peripheral blood mononuclear cells daily from clinic visits and another staff member is available for on-demand and after-hours processing. Samples are cryopreserved on-site in temperature-monitored LN2 freezers for short-term storage. For long-term storage, samples are transferred to Novare Biologistics,off-site cGMP-compliant, New York State-licensed, and FDA-registered biorepository. Routinely assess quality of processing and cryopreservation. Core meets performance targets for cell viability and recovery necessary for certification by Integrated Biobank of Luxembourg. Offers service for isolating tumor-infiltrating lymphocytes using dissociation protocols optimized for various tumor tissues. Offers flow cytometry at Perlmutter Cancer Center, along with expert service and training. Sterile fluorescence-activated cell sorting (17 colors) is routinely performed with options for high-speed (50K cells per second), single-cell deposition (into polymerase chain reaction plates), and BSL-3 sorting for unscreened or infected human material. Data analysis workstations are also available.Offers single-cell analysis through our cutting-edge 30-parameter flow cytometry technology and Integrated Molecular Cytometry Platforms (IMCPs). Immune, cell, phenotype, antitumor, response, mechanism, escape, evasion, biomarker, predict, patient, toxicity, monitoring, processing, storge, periferal, blood, mononuclear, biorespository, service, core, ABRF, USEDit is listed by: ABRF CoreMarketplace
has parent organization: New York University School of Medicine; New York; USA
NIH Office of the Director S10 OD016425 THIS RESOURCE IS NO LONGER IN SERVICE. ABRF_833 https://coremarketplace.org/?FacilityID=833&citation=1 SCR_017936 New York University School of Medicine Langone Health Precision Immunology Laboratory, NYU Langone Immune Monitoring Laboratory, NYU Langone Precision Immunology Laboratory 2026-02-11 10:59:43 3
Northwestern University Proteomics Core Facility
 
Resource Report
Resource Website
1+ mentions
Northwestern University Proteomics Core Facility (RRID:SCR_017945) core facility, access service resource, service resource Core offers multiple types of experiments from simple protein identification to protein quantitation. Performs traditional bottom-up proteomics, where proteins are digested with enzyme prior to analysis and intact, top-down proteomics analyses. Services include proteins identification after in-gel or in-solution digestion, top-down mass spectrometry to preserve post-translationally modified forms of proteins present in vivo by measuring them intact, IP-MS Pulldown,BioID service to identify target of biotin ligase that has been tagged onto their protein via traditional cloning methods,Untargeted Quantitative Peptide Proteomics,Targeted Quantitative Peptide Proteomics,Epiproteomic Histone Modification Panel A,Epiproteomic Histone Modification Panel B,Untargeted Metabolomics,Phosphoproteomics,PTM Scan,ChIP-MS. Protein, indentification, quantitation, proteomics, analysis, enzyme, digestion, mass, spectrometry, peptide, targeted, epiproteomic, histone, modification, untargeted, phosphoproteomics, PTM Scan, ChIP-MS, service, core, ABRF is listed by: ABRF CoreMarketplace
is related to: USEDit
has parent organization: Northwestern University; Illinois; USA
NCI P30 CA060553;
NIH Office of the Director S10 OD025194;
NIGMS P41 GM108569
Open SCR_017880, ABRF_944 https://coremarketplace.org/?FacilityID=944 https://coremarketplace.org/?FacilityID=738 SCR_017945 Northwestern Proteomics, Northwestern University Proteomics Center of Excellence Core Facility 2026-02-11 10:59:43 5
Vermont University Larner College of Medicine Microscopy Imaging Center Core Facility
 
Resource Report
Resource Website
50+ mentions
Vermont University Larner College of Medicine Microscopy Imaging Center Core Facility (RRID:SCR_018821) MIC core facility, access service resource, service resource Core provides imaging equipment including JEOL 1400 transmission electron microscope with AMT 11 megapixel digital camera,JEOL JSM 6060 scanning electron microscope with attached Oxford INCA energy dispersive spectroscopy detector for element analysis,Nikon Air HD confocal scanning laser microscope, Nikon C2 confocal scanning laser microscope, Andor Spinning Disk confocal microscope, Zeiss LSM 7 Multiphoton confocal microscope, Nikon STORM super-resolution light microscope, Olympus BX50 research microscope for transmitted light, phase contrast, and epi-fluorescence microscopy, Asylum Research MFP-3D BIO atomic force microscope, Asylum Research Cypher Environmental atomic force microscope,Arcturus XT-Ti Laser Capture Microdissector system, Olympus IX70 inverted microscope with associated Applied BioPhysics Electri Cell-Substrate Impedance Sensing (ECIS Ztheta) system, Leica VERSA 8 whole slide imager, Dell workstations containing Molecular Devices MetaMorph image analysis software for complex quantitative image analysis, Indica Labs HALO software, Improvision Volocity, MBR StereoInvestigator. USEDit, microscopy imaging, transmission electron microscope, microscope, image analysis service, ABRF is listed by: ABRF CoreMarketplace
is related to: USEDit
has parent organization: University of Vermont; Vermont; USA
NCRR S10RR025498;
NIH Office of the Director 1S10OD025030
Open ABRF_22 https://coremarketplace.org/?FacilityID=22 SCR_018821 , UVM - Microscopy Imaging Center, Vermont University Larner College of Medicine Microscopy Imaging Center, University of Vermont Larner College of Medicine Microscopy Imaging Center 2026-02-11 10:59:53 50
Dartmouth Genomics and Molecular Biology Shared Resource (GMBSR)
 
Resource Report
Resource Website
10+ mentions
Dartmouth Genomics and Molecular Biology Shared Resource (GMBSR) (RRID:SCR_021293) core facility, access service resource, service resource Genomics Section provides services and instrumentation that enable DNA/RNA extraction and quality control, next-generation Illumina and Nanopore sequencing, epigenetic profiling, and microarray analysis on a whole-genome scale, from the level organisms to single cells. Molecular Biology Section provides DNA fragment analysis qPCR, Sanger sequencing and NanoString Technology. USEDit, ABRF, DNA fragment analysis qPCR, Sanger sequencing, NanoString Technology, is listed by: ABRF CoreMarketplace
has parent organization: Dartmouth College; New Hampshire; USA
NCI 5P30CA023108;
NIGMS P20GM130454;
NIH Office of the Director 1S10OD030242;
NIH Office of the Director S10OD025235
ABRF_995 https://coremarketplace.org/?FacilityID=995 SCR_021293 Molecular Biology Resource, Molecular Biology Shared Resource 2026-02-11 11:00:05 37
University of Hawaii at Manoa Microscopy, Imaging, and Flow Cytometry Core Facility
 
Resource Report
Resource Website
University of Hawaii at Manoa Microscopy, Imaging, and Flow Cytometry Core Facility (RRID:SCR_021753) core facility, access service resource, service resource Core offers optical analysis instrumentation from specialized light microscopes to bioluminescence preclinical imagers to flow cytometers for multicolor cellular analysis. Services include high resolution optical sectioning of fixed cells and tissues, time lapse imaging of living cell cultures, non invasive monitoring of tumor formation in preclinical studies, and extracting specific cells of interest from tissue samples. USEDit, ABRF, optical analysis instrumentation, specialized light microscopes, bioluminescence preclinical imagers, flow cytometers, multicolor cellular analysis is listed by: ABRF CoreMarketplace
has parent organization: University of Hawaii at Manoa
NIH Office of the Director ODO28515 ABRF_1220 https://coremarketplace.org/?FacilityID=1220 SCR_021753 and Flow Cytometry Core, Imaging, UHCC Microscopy 2026-02-11 11:00:11 0
Penn State Hershey College of Medicine Atomic Force Microscopy Core Facility
 
Resource Report
Resource Website
1+ mentions
Penn State Hershey College of Medicine Atomic Force Microscopy Core Facility (RRID:SCR_025075) core facility, access service resource, service resource Provides College of Medicine research community with access to atomic force microscopy equipment and expertise. ABRF, atomic force microscopy, is listed by: ABRF CoreMarketplace
has parent organization: Pennsylvania State Hershey College of Medicine; Pennsylvania; USA
NIH Office of the Director S10 OD030279 ABRF_2637 https://coremarketplace.org/?FacilityID=2637&citation=1 SCR_025075 Hershey College of Medicine Atomic Force Microscopy Core Facility, Atomic Force Microscopy Core 2026-02-11 11:00:55 3
ColabFold
 
Resource Report
Resource Website
100+ mentions
ColabFold (RRID:SCR_025453) software resource, source code Software application offers accelerated prediction of protein structures and complexes by combining homology search of MMseqs2 with AlphaFold2 or RoseTTAFold. Used for protein folding. prediction of protein structures and complexes, protein folding, protein structure prediction, Max Planck Society ;
University of Göttingen ;
National Research Foundation of Korea ;
Seoul National University ;
NIH Office of the Director DP5OD026389;
NIAID R21AI156595;
NSF
PMID:35637307 Free, Available for download, Freely available https://github.com/sokrypton/ColabFold/blob/main/AlphaFold2.ipynb SCR_025453 2026-02-11 11:01:00 391
AI-READI
 
Resource Report
Resource Website
AI-READI (RRID:SCR_027031) project portal, portal, data or information resource, database Multidisciplinary data generation project which aims to create and share multimodal dataset optimized for artificial intelligence research in type 2 diabetes. At each release of the AI-READI dataset, two sets will be made available: public access and controlled access set. The public set will be stripped of Protected Health Information (PHI) as well as information related to the sex and race/ethnicity of the participants. Multidisciplinary data generation, create and share multimodal dataset, artificial intelligence, type 2 diabetes, is listed by: NIDDK Information Network (dkNET) NIH Bridge2AI Program ;
NIH Office of the Director 1OT2OD032644;
NIDDK P30 DK035816
PMID:39516364
PMID:39915016
SCR_027031 Artificial Intelligence Ready and Equitable Atlas for Diabetes Insights 2026-02-11 11:01:22 0

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