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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Website Status Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
Ontology of Medically Related Social Entities
 
Resource Report
Resource Website
Ontology of Medically Related Social Entities (RRID:SCR_003439) OMRSE data or information resource, ontology, controlled vocabulary An ontology covering the domain of social entities that are related to health care, such as demographic information (social entities for recording gender (but not sex) and marital status, for example) and the roles of various individuals and organizations (patient, hospital, etc.) owl, medicine, health care, demographic is listed by: BioPortal
is listed by: OBO
is listed by: Google Code
is related to: Information Artifact Ontology
Free, Available for download, Freely available nlx_157534 http://purl.bioontology.org/ontology/OMRSE
http://purl.obolibrary.org/obo/omrse.owl
SCR_003439 2026-02-14 02:00:49 0
Innovative Medicines Initiative
 
Resource Report
Resource Website
100+ mentions
Innovative Medicines Initiative (RRID:SCR_003754) IMI organization Initiative to improve health by speeding up the development of, and patient access to, innovative medicines, particularly in areas where there is an unmet medical or social need. It does this by initiating and managing consortia composed of the key players involved in healthcare research, including universities, the pharmaceutical and other industries, small and medium-sized enterprises (SMEs), patient organizations, and medicines regulators. IMI is a public-private partnership between the European Union and the European pharmaceutical industry, represented by the European Federation of Pharmaceutical Industries and Associations (EFPIA), with a timeframe separated into two phases (2008-2013, 2014-2024) that are each defined by unique research agendas. The first phase (2008 2013) had four pillars that defined the focus of its research agenda: * Predicting safety: evaluating the safety of a compound during the pre-clinical phase of the development process and the later phases in clinical development. * Predicting efficacy: improving the ability to predict how a drug will interact in humans and how it may produce a change in function. * Knowledge management: utilization of information and data for predicting safety and efficacy. * Education and training: closing existing training gaps in the drug development process. Some of the consortia managed under IMI focused on specific health issues while others focused on broader challenges in drug development. Additionally, IMI launched a number of education and training projects during its first phases. The goal of the second phase (IMI2, 2014-2024) is to develop next generation vaccines and drugs. The focus is on delivering the right prevention and treatment for the right patient at the right time. There is a strong focus on the development of new medicines with an emphasis on tools and methods that accelerate patient access to new medicines. IMI2's agenda can be defined by four axes of research: * target validation and biomarker research (efficacy and safety) * adoption of innovative clinical trial paradigms * innovative medicines * patient-tailored adherence programs As part of its distinct goals, IMI2 aims to deliver: * 30% better success rate in clinical trials of priority medicines identified by the WHO; clinical proof of concept in immunological, respiratory, neurological and neurodegenerative diseases in five years; * new and approved diagnostic markers for four of these diseases and at least two new medicines which could either be new antibiotics or new therapies for Alzheimer's disease. drug development, drug, tool development, biomarker, data sharing, target validation, safety, efficacy, clinical trial, medicine, adherence program, vaccine, consortium, diagnostic marker, oncology, drug discovery is listed by: Consortia-pedia
is related to: AddNeuroMed
is related to: European Federation of Pharmaceutical Industries and Associations
has parent organization: European Union
has parent organization: European Federation of Pharmaceutical Industries and Associations
is parent organization of: AddNeuroMed
European Union FP7 ;
Horizon 2020 ;
EFPIA ;
Other life science industries or organizations
Wikidata: Q1664196, nlx_157984, grid.454814.8, ISNI: 0000 0004 0577 0821 https://ror.org/019af4n30 SCR_003754 2026-02-14 02:00:52 275
Global Health Innovative Technology Fund
 
Resource Report
Resource Website
10+ mentions
Global Health Innovative Technology Fund (RRID:SCR_003753) GHIT Fund, GHIT institution A consortium that focuses their efforts on discovering and developing new pharmaceutical drugs, vaccines (both preventive and therapeutic) and diagnostics against the infectious diseases that are prevalent in developing countries. The initial targets are those disorders designated by WHO as neglected tropical diseases prevalent in developing nations. The consortium aims to facilitate international partnerships that enable Japanese technology, innovations, and insights to play a more direct role in improving global health. Another goal of GHIT is to develop a new drug-discovery screening platform to assist the screening of compound libraries housed within Japanese companies and academic institutions. The vision is to have Japanese research organizations donate compounds, with the Fund reimbursing screening costs and leveraging screening programs of existing product-development partners. global health, health, drug development, biomarker, consortium, drug, vaccine, diagnostics, healthcare, developing country, disease is listed by: Consortia-pedia Government of Japan ;
Bill and Melinda Gates Foundation ;
Pharmaceutical industry
grid.475132.6, nlx_157983 https://ror.org/02yfqyv95 SCR_003753 2026-02-14 02:00:35 16
Medical Dictionary for Regulatory Activities
 
Resource Report
Resource Website
1+ mentions
Medical Dictionary for Regulatory Activities (RRID:SCR_003751) MEDDRA data or information resource, ontology, controlled vocabulary Ontology of Medical Dictionary for Regulatory Activities Terminology (MedDRA) umls is listed by: BioPortal nlx_157471 SCR_003751 2026-02-14 02:00:30 2
Coca-Cola Company
 
Resource Report
Resource Website
1+ mentions
Coca-Cola Company (RRID:SCR_003749) Coca-Cola, KO commercial organization An American multinational beverage corporation and manufacturer, retailer and marketer of nonalcoholic beverage concentrates and syrups, which is headquartered in Atlanta, Georgia. (Wikipedia) It is the world's largest beverage company, refreshing consumers with more than 500 sparkling and still brands. beverage Crossref funder ID: 100004367, ISNI: 0000 0004 0504 2170, grid.451378.c, Wikidata: Q3295867, nlx_158091 https://ror.org/00yc8qw13 SCR_003749 KO, The Coca-Cola Company, Coca-Cola 2026-02-14 02:00:35 2
Seven Hills Bioreagents
 
Resource Report
Resource Website
1+ mentions
Seven Hills Bioreagents (RRID:SCR_003748) commercial organization An Antibody supplier nlx_152458 SCR_003748 2026-02-14 02:00:51 3
RevMan
 
Resource Report
Resource Website
10000+ mentions
RevMan (RRID:SCR_003581) RevMan software resource THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 5, 2023.A software package that does meta-analysis and provides results in tabular format and graphically., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. is listed by: OMICtools
is listed by: SoftCite
THIS RESOURCE IS NO LONGER IN SERVICE OMICS_00244 SCR_003581 Review Manager 2026-02-14 02:00:29 12961
Torrey Pines Biolabs
 
Resource Report
Resource Website
100+ mentions
Torrey Pines Biolabs (RRID:SCR_003580) commercial organization An Antibody supplier nlx_152481 SCR_003580 Torrey Pines Biolabs Inc., Torrey Pines Biolabs Inc 2026-02-14 02:00:52 376
Charles Stark Draper Laboratory
 
Resource Report
Resource Website
1+ mentions
Charles Stark Draper Laboratory (RRID:SCR_003736) Draper nonprofit organization A not-for-profit research and development laboratory focused on the design, development, and deployment of advanced technological solutions for the nation's most challenging and important problems in security, space exploration, healthcare, and energy. Their expertise includes the areas of guidance, navigation, and control systems; fault-tolerant computing; advanced algorithms and software solutions; modeling and simulation; and MEMS and multichip module technology. With a strong commitment to delivering working solutions to their sponsors, they apply their expertise to a variety of domains, including autonomous air, land, sea, and space systems; information integration; distributed sensors and networks; precision-guided munitions; and biomedical engineering; chemical/biological defense; and energy system modeling and management. When appropriate for the needs of their sponsors, they will work with commercial partners to transition their technology to commercial production. engineering, technology, research, defense, space, biomedical, energy, service is related to: Massachusetts Institute of Technology; Massachusetts; USA;
is parent organization of: Center for Integration of Medicine and Innovative Technology
Acknowledgement required, Non-commercial grid.417533.7, Crossref funder ID: 100006353, nlx_157942, ISNI: 0000 0004 0634 6125, Wikidata: Q2876029 https://ror.org/04378d909 SCR_003736 Draper Laboratory, The Charles Stark Draper Laboratory Inc 2026-02-14 02:00:52 1
PyroBayes
 
Resource Report
Resource Website
1+ mentions
PyroBayes (RRID:SCR_003757) PyroBayes software resource THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 6, 2023. A base caller for pyrosequences from the 454 Life Sciences sequencing machines. is listed by: OMICtools PMID:18193056 THIS RESOURCE IS NO LONGER IN SERVICE OMICS_01155 SCR_003757 2026-02-14 02:00:35 3
Oxford Nanopore Technologies
 
Resource Report
Resource Website
100+ mentions
Oxford Nanopore Technologies (RRID:SCR_003756) Oxford Nanopore commercial organization Commercial organization developing a disruptive, proprietary technology platform for the direct, electronic analysis of single molecules. The instruments GridION and MinION are adaptable for the analysis of DNA, RNA, proteins, small molecules and other types of molecule. Consequently, the platform has a broad range of potential applications, including scientific research, personalized medicine, crop science and security / defence. nanopore technology, dna, rna, protein, small molecule, molecule, analysis, nanopore, nanopore sensing is related to: READNA
is related to: Pychopper
nlx_158233 SCR_003756 Oxford Nanopore Technologies Ltd 2026-02-14 02:00:51 399
PSTC Nephrotoxicity Biomarkers
 
Resource Report
Resource Website
PSTC Nephrotoxicity Biomarkers (RRID:SCR_003709) PSTC Nephrotoxicity Biomarkers data or information resource, narrative resource, standard specification Urinary kidney biomarkers (KIM-1, albumin, total protein, 2-microglobulin, cystatin C, clusterin and trefoil factor-3) that are considered acceptable biomarkers for the detection of acute drug-induced nephrotoxicity in rats and can be included along with traditional clinical chemistry markers and histopathology in toxicology studies. These biomarkers may be used voluntarily as additional evidence of nephrotoxicity in nonclinical safety assessment studies to complement the standard data (BUN and sCr). In ROC analyses, some of these biomarkers showed better sensitivity and specificity than BUN and sCr relative to histopathological alterations considered to be the gold standard when tested with a limited number of nephrotoxicant and control compounds. biomarker, drug development, drug, urinary, urinary biomarker, gold standard, kim-1, albumin, total protein, beta2-microglobulin, cystatin c, clusterin, trefoil factor-3, kidney, nonclinical is recommended by: U.S. Food and Drug Administration
has parent organization: Drug Development Tools Qualification Programs
has parent organization: Predictive Safety Testing Consortium
Nephrotoxicity, Drug-induced nephrotoxicity Public nlx_157890 SCR_003709 Predictive Safety and Testing Consortium Drug-induced Nephrotoxicity Biomarkers, PSTC NWG Drug-induced Nephrotoxicity Biomarkers 2026-02-14 02:00:35 0
Brandeis University; Massachusetts; USA
 
Resource Report
Resource Website
Brandeis University; Massachusetts; USA (RRID:SCR_003669) university Private research university located in the Boston suburb of Waltham, Massachusetts. Founded in 1948 as a non-sectarian, coeducational institution sponsored by the Jewish community, Brandeis was established on the site of the former Middlesex University. is parent organization of: Paper Rejection Repository
is parent organization of: Enhancer Trap Line Browser
is parent organization of: Brandeis University Neuroscience Undergraduate Program
is parent organization of: Brandeis University Neuroscience Graduate Program
is parent organization of: Research Network in Early Experience and Brain Development
is parent organization of: Neurofitter
is parent organization of: Brandeis University Light Microscopy Core Facility
is parent organization of: Brandeis University Louise Mashal Gabbay Cellular Visualization Center Electron Microscopy Core Facility
nlx_50198, Wikidata:Q49119, ISNI:0000 0004 1936 9473, grid.253264.4, Crossref funder ID:100007864 https://ror.org/05abbep66 SCR_003669 2026-02-14 02:00:50 0
eBioscience
 
Resource Report
Resource Website
50+ mentions
eBioscience (RRID:SCR_003660) commercial organization An Antibody supplier nlx_152349 SCR_003660 2026-02-14 02:00:52 70
Signalway
 
Resource Report
Resource Website
10+ mentions
Signalway (RRID:SCR_003659) SAB commercial organization An Antibody supplier nlx_152462 SCR_003659 Signalway Antibody Co. Ltd 2026-02-14 02:00:35 11
Experimental Factor Ontology
 
Resource Report
Resource Website
10+ mentions
Experimental Factor Ontology (RRID:SCR_003574) EFO data or information resource, ontology, controlled vocabulary An application focused ontology modelling the experimental factors in ArrayExpress and Gene Expression Atlas. It has been developed to increase the richness of the annotations that are currently made in the ArrayExpress repository, to promote consistent annotation, to facilitate automatic annotation and to integrate external data. The ontology describes cross-product classes from reference ontologies in area such as disease, cell line, cell type and anatomy. The methodology employed in the development of EFO involves construction of mappings to multiple existing domain specific ontologies, such as the Disease Ontology and Cell Type Ontology. This is achieved using a combination of automated and manual curation steps and the use of a phonetic matching algorithm. The ontology is evaluated with use cases from the ArrayExpress repository and ArrayExpress Atlas. You may also browse the EFO in the NCBO Bioportal. Term submissions are welcome. gene expression, owl, experimental factor, disease, cell line, cell type, anatomy, gold standard is listed by: BioPortal
is related to: ArrayExpress
is related to: ArrayExpress
is related to: Gene Expression Atlas
has parent organization: European Bioinformatics Institute
European Molecular Biology Laboratory ;
European Union FELICS contract 021902;
European Union EMERALD LSHG-CT-2006-037686;
European Union Gen2Phen contract 200754
PMID:20200009 The community can contribute to this resource nlx_11363 SCR_003574 2026-02-14 02:00:29 16
RAREMETAL
 
Resource Report
Resource Website
10+ mentions
RAREMETAL (RRID:SCR_003573) RAREMETAL software resource A software program that facilitates the meta-analysis of rare variants from genotype arrays or sequencing. bio.tools is listed by: OMICtools
is listed by: bio.tools
is listed by: Debian
has parent organization: University of Michigan; Ann Arbor; USA
PMID:24894501 biotools:raremetal, OMICS_00243 https://bio.tools/raremetal SCR_003573 2026-02-14 02:00:52 22
Adverse Event Reporting Ontology
 
Resource Report
Resource Website
1+ mentions
Adverse Event Reporting Ontology (RRID:SCR_003571) AERO data or information resource, ontology, controlled vocabulary An ontology aimed at supporting clinicians at the time of data entry, increasing quality and accuracy of reported adverse events. owl, rdf, aero, bfo, ogms, iao, adverse event, clinician, health is listed by: BioPortal
is listed by: OBO
is listed by: Google Code
is related to: Information Artifact Ontology
New BSD License (code), Creative Commons Attribution License (content) nlx_11209 http://bioportal.bioontology.org/ontologies/1580
http://www.obofoundry.org/cgi-bin/detail.cgi?id=AERO
http://purl.obolibrary.org/obo/aero.owl
http://purl.obolibrary.org/obo/aero
SCR_003571 2026-02-14 02:00:50 1
Corpus Callosum Thickness Profile Analysis Pipeline
 
Resource Report
Resource Website
Corpus Callosum Thickness Profile Analysis Pipeline (RRID:SCR_003575) ccsegthickness software resource An end-to-end pipeline for corpus callosum processing that provides automated midsagittal alignment, CC segmentation with a quality control tool, and thickness profile generation. Groupwise analysis is facilitated by permutation testing with FWER and FDR multiple comparison correction. Results display is facilitated by a display script that shows p-values on a 3D pipe representation of a CC. This pipeline is implemented in MATLAB and requires the Image Processing Toolbox. There are plans to implement it completely in Python. linux, matlab, mr, nifti-1, posix/unix-like, corpus callosum is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) PMID:24968872 GNU General Public License nlx_157716 SCR_003575 2026-02-14 02:00:50 0
Medical Diagnostic Categories - Diagnosis Related Groups
 
Resource Report
Resource Website
Medical Diagnostic Categories - Diagnosis Related Groups (RRID:SCR_003725) MDCDRG data or information resource, ontology, controlled vocabulary Ontology of Medical Diagnostic Categories-Diagnosis Related Groups owl is listed by: BioPortal nlx_157470 SCR_003725 2026-02-14 02:00:51 0

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