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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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LNKTOCRI Resource Report Resource Website |
LNKTOCRI (RRID:SCR_009256) | LNKTOCRI | software application, software resource | Software application for conversion of LINKAGE format data files to CRI-MAP format (entry from Genetic Analysis Software) | gene, genetic, genomic, pascal, unix, ms-dos | is listed by: Genetic Analysis Software | nlx_154433 | SCR_009256 | 2026-02-15 09:20:09 | 0 | |||||||||
|
LINKBASE Resource Report Resource Website |
LINKBASE (RRID:SCR_009254) | LINKBASE | software application, software resource | An easy and practical database-program made for researchers who want to connect the genotype data produced by automatic sequencers ( ABI Prism 377 (Perkin Elmer) and ALF (Pharmacia) ) to linkage and sib-pair programs. (entry from Genetic Analysis Software) | gene, genetic, genomic, delphi 1.0, ms-windows, (3.1/95/nt) | is listed by: Genetic Analysis Software | nlx_154431 | SCR_009254 | 2026-02-15 09:19:59 | 0 | |||||||||
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LIPED Resource Report Resource Website 1+ mentions |
LIPED (RRID:SCR_009255) | LIPED | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran, ms-windows | is listed by: Genetic Analysis Software | nlx_154432 | SCR_009255 | Likelihoods in Pedigrees | 2026-02-15 09:19:40 | 5 | ||||||||
|
J/QTL Resource Report Resource Website 10+ mentions |
J/QTL (RRID:SCR_009250) | J/QTL | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 9, 2023. A Java GUI for the popular QTL data analysis software R/QTL that provides a flexible and powerful working environment for users to perform a variety of tasks. (entry from Genetic Analysis Software) | gene, genetic, genomic, java | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154418 | SCR_009250 | 2026-02-15 09:19:59 | 26 | ||||||||
|
JPSGCS Resource Report Resource Website 1+ mentions |
JPSGCS (RRID:SCR_009249) | JPSGCS | software application, software resource | Software application to address problems in statistical genetics; however, they include several programs and packages that may be more generally useful, for instance, programs to draw and manipulate graphs, simulation programs, and programs to estimate graphical models. (entry from Genetic Analysis Software) | gene, genetic, genomic, java, linux, macos, ms-windows | is listed by: Genetic Analysis Software | nlx_154417 | SCR_009249 | Java Programs for Statistical Genetics and Computational Statistics GENEPI.JAR | 2026-02-15 09:20:06 | 1 | ||||||||
|
NOPAR Resource Report Resource Website 1+ mentions |
NOPAR (RRID:SCR_009246) | NOPAR | software application, software resource | Software application for non-parametric linkage and association tests primarily for a quantitative trait (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran, unix, (sunos) | is listed by: Genetic Analysis Software | nlx_154414 | SCR_009246 | 2026-02-15 09:19:59 | 1 | |||||||||
|
HTR Resource Report Resource Website 1+ mentions |
HTR (RRID:SCR_009241) | HTR | software application, software resource | Software application for haplotype association mapping using unrelated individuals; fixed and sliding window analysis; overall tests and tests for individual haplotype effects (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, bash shell, ms-windows, unix, solaris, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
nlx_154402, biotools:htr | https://bio.tools/htr | SCR_009241 | Haplotype Trend Regression | 2026-02-15 09:20:06 | 1 | |||||||
|
MIDAS Resource Report Resource Website 100+ mentions |
MIDAS (RRID:SCR_009274) | MIDAS | software application, software resource | Software application for analysis and visualisation of interallelic disequilibrium between multiallelic markers (entry from Genetic Analysis Software) | gene, genetic, genomic, python, ms-windows, (2000/xp), linux, macos | is listed by: Genetic Analysis Software | nlx_154479 | SCR_009274 | Multiallelic Interallelic Disequilibrium Analysis Software | 2026-02-15 09:20:06 | 314 | ||||||||
|
MAPCHART Resource Report Resource Website 1000+ mentions |
MAPCHART (RRID:SCR_009273) | MAPCHART | software application, software resource | Software application that produces charts of genetic linkage and QTL data. The charts are composed of a sequence of vertical bars representing the linkage groups or chromosomes. On these bars the positions of loci are indicated, and next to the bars QTL intervals and QTL graphs can be shown. MapChart reads the linkage information (i.e. the locus and QTL names and their positions) from text files. Many options to adapt the charts to different purposes. Can produce graphic files (enhanced windows metafile format) which can be enhanced with other MS-Windows software. (entry from Genetic Analysis Software) | gene, genetic, genomic, delphi, ms-windows, (95/98/me/nt4.0/2000) | is listed by: Genetic Analysis Software | nlx_154454 | SCR_009273 | Windows software for the graphical presentation of linkage maps and QTLs | 2026-02-15 09:20:09 | 1380 | ||||||||
|
MAMA Resource Report Resource Website 50+ mentions |
MAMA (RRID:SCR_009270) | MAMA | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, web-based | is listed by: Genetic Analysis Software | nlx_154450 | SCR_009270 | Multivariate Association Mapping Algorithms | 2026-02-15 09:20:06 | 95 | ||||||||
|
MADMAPPER Resource Report Resource Website 10+ mentions |
MADMAPPER (RRID:SCR_009267) | MADMAPPER | software application, software resource | Suite of Python scripts for quality control of genetic markers, group analysis and inference of linear order of markers on linkage groups. MadMapper_RECBIT analyses raw marker scores for recombinant inbred lines. MadMapper_RECBIT generates pairwise distance scores for all markers, clusters based on pairwise distances, identifies genetic bins, assigns new markers to known linkage groups, validates allele calls, and assigns quality classes to each marker based on several criteria and cutoff values. MadMapper_XDELTA utilizes new algorithm, Minimum Entropy Approach and Best-Fit Extension, to infer linear order of markers. MadMapper_XDELTA analyzes two-dimensional matrices of all pairwise scores and finds best map that has minimal total sum of differences between adjacent cells (map with lowest entropy). MadMapper is freely available at http://www.atgc.org/XLinkage/MadMapper/ (entry from Genetic Analysis Software) | gene, genetic, genomic, python | is listed by: Genetic Analysis Software | nlx_154447 | SCR_009267 | 2026-02-15 09:20:00 | 13 | |||||||||
|
Marker And Gene Interpolation and Correlation Resource Report Resource Website 10+ mentions |
Marker And Gene Interpolation and Correlation (RRID:SCR_009268) | MaGIC | software application, software resource | Software program to generate targeted marker sets for genome-wide association studies. | gene, genetic, genomic, microsoft visual foxpro, windows |
is listed by: Genetic Analysis Software has parent organization: King's College London; London; United Kingdom |
PMID:15597550 | Free, Public | nlx_154448 | SCR_009268 | Marker And Gene Interpolation and Correlation | 2026-02-15 09:19:41 | 10 | ||||||
|
LTSOFT Resource Report Resource Website 1+ mentions |
LTSOFT (RRID:SCR_009266) | LTSOFT | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. A software suite designed to more powerfully leverage clinical-covariates such as age, bmi, smoking status, and gender when conducting case-control association studies. Including these covariates in standard regression models is not only suboptimal, but can in many instances reduce power. LTSOFT employs a liability threshold model approach that takes advantage of known epidemiological results to better model the covariates'' relationship to the phenotype of interest (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154445 | SCR_009266 | 2026-02-15 09:20:06 | 3 | ||||||||
|
LRP Resource Report Resource Website 1+ mentions |
LRP (RRID:SCR_009263) | LRP | software application, software resource | Software application that is part of the LINKAGE auxiliary program (entry from Genetic Analysis Software) | gene, genetic, genomic, c and pascal, unix, vms, ms-dos, os2 | is listed by: Genetic Analysis Software | nlx_154442 | SCR_009263 | Linkage Report Program | 2026-02-15 09:19:41 | 1 | ||||||||
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L-POP Resource Report Resource Website 1+ mentions |
L-POP (RRID:SCR_009262) | L-POP | software application, software resource | Software application that detects population stratification in samples of unrelated individuals for whom a number of unlinked genotypes have been measured. (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic, ms-dos | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154441 | SCR_009262 | 2026-02-15 09:20:00 | 2 | ||||||||
|
LOKI Resource Report Resource Website 10+ mentions |
LOKI (RRID:SCR_009260) | LOKI | software application, software resource | Software program for analyses a quantitative trait observed on large pedigrees using Markov chain Monte Carlo multipoint linkage and segregation analysis. The trait may be determined by multiple loci. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix, (solaris 2.5, osf1 3.2, and others), linux, (2.0.30) | is listed by: Genetic Analysis Software | nlx_154439 | SCR_009260 | PANGAEA | 2026-02-15 09:20:09 | 29 | ||||||||
|
PROFILER Resource Report Resource Website 1000+ mentions |
PROFILER (RRID:SCR_009339) | PROFILER | software application, software resource | A flexible software tool to generate the probability distribution of joint multilocus genotypes defined by sets of individuals within the pedigree and sets of markers within the framework map. (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic, linux, unix, solaris |
is listed by: Genetic Analysis Software is listed by: SoftCite |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154552 | SCR_009339 | 2026-02-15 09:19:42 | 1294 | ||||||||
|
PREPLINK Resource Report Resource Website |
PREPLINK (RRID:SCR_009335) | PREPLINK | software application, software resource | Software application that is part of the LINKAGE auxiliary program (entry from Genetic Analysis Software) | gene, genetic, genomic, c and pascal, unix, vms, ms-dos, os2 | is listed by: Genetic Analysis Software | nlx_154547 | SCR_009335 | MAKE PEDfiles | 2026-02-15 09:19:42 | 0 | ||||||||
|
PREST Resource Report Resource Website 10+ mentions |
PREST (RRID:SCR_009336) | PREST | software application, software resource | Software program that detects pedigree errors in general outbred pedigrees by use of genome-screen data. When a potential pedigree error is detected, our companion program, ALTERTEST, determines which relationships are compatible with the observed genotype data. Both programs are freely available on the web. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, linux, unix, solaris | is listed by: Genetic Analysis Software | nlx_154548 | SCR_009336 | Pedigree RElationship Statistical Test | 2026-02-15 09:20:11 | 11 | ||||||||
|
POWTEST Resource Report Resource Website |
POWTEST (RRID:SCR_009334) | POWTEST | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. Excel spreadsheet to calculate power of affected sibpairs and TDT analyses (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154546 | SCR_009334 | 2026-02-15 09:20:01 | 0 |
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