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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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PEDIGRAPH Resource Report Resource Website 10+ mentions |
PEDIGRAPH (RRID:SCR_001938) | Pedigraph | software application, software resource | A pedigree visualization program specifically designed to draw large, complex pedigrees. (entry from Genetic Analysis Software) Options include: * Full pedigree * Summarization * Extraction of individual pedigrees * Inbreeding calculation * Coancestry coefficient calculation * Color control * Drawing size * Page size and margins * Drawing styles | gene, genetic, genomic, c, c++, ms-windows, linux, pedigree, java, bio.tools |
is listed by: OMICtools is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian has parent organization: University of Minnesota Twin Cities; Minnesota; USA |
PMID:14986440 | Acknowledgement required, Copyrighted | biotools:pedigraph, OMICS_00212, nlx_154519 | https://bio.tools/pedigraph | SCR_001938 | 2026-02-15 09:18:12 | 17 | ||||||
|
MRH Resource Report Resource Website |
MRH (RRID:SCR_000841) | MRH | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23,2022. Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, ms-windows, unix, solaris | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154493 | SCR_000841 | Minimum Recombinant Haplotype | 2026-02-15 09:18:00 | 0 | |||||||
|
QTL CAFE Resource Report Resource Website |
QTL CAFE (RRID:SCR_000844) | QTL CAFE | software application, software resource | Software application providing a user freiendly way to perform QTL analysis. The software currently allows 3 types of QTL analysis: (1) single marker ANOVA. (2) marker regression. (3) interval mapping by regression. (entry from Genetic Analysis Software) | gene, genetic, genomic, java | is listed by: Genetic Analysis Software | nlx_154563 | SCR_000844 | 2026-02-15 09:18:00 | 0 | |||||||||
|
PEDPLOT Resource Report Resource Website |
PEDPLOT (RRID:SCR_003843) | PEDPLOT | software application, software resource | Pedigree Plotting Program for the Pedfile Format (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, postscript, unix, (sparc-solaris 2.5/dec unix 4.0/x86-solaris 2.6) | is listed by: Genetic Analysis Software | nlx_154526 | SCR_003843 | 2026-02-15 09:18:35 | 0 | |||||||||
|
PARENTE Resource Report Resource Website 1+ mentions |
PARENTE (RRID:SCR_004717) | PARENTE | software application, software resource | Software application for parentage inference using molecular data from diploid codominant markers (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154508 | SCR_004717 | 2026-02-15 09:18:48 | 2 | |||||||||
|
Multipoint Identical-by-descent Method Resource Report Resource Website |
Multipoint Identical-by-descent Method (RRID:SCR_004676) | MIM | software application, software resource | Software application using multipoint IBD method for partitioning genetic variance of quantitative traits to specific chromosome regions using data on nuclear families. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix | is listed by: Genetic Analysis Software | PMID:9433587 | nlx_154482 | SCR_004676 | 2026-02-15 09:18:47 | 0 | ||||||||
|
PEDRAW/WPEDRAW Resource Report Resource Website |
PEDRAW/WPEDRAW (RRID:SCR_004797) | PEDRAW/WPEDRAW | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 11, 2023. A pedigree drawing program using LINKAGE data files (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, ms-dos, ms-windows, x-window | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154527 | SCR_004797 | Pedigree Drawing/ Window Pedigree Drawing (MS-Window and X-Window version of PEDRAW) | 2026-02-15 09:18:54 | 0 | |||||||
|
TDTASP Resource Report Resource Website 1+ mentions |
TDTASP (RRID:SCR_004943) | TDTASP | software application, software resource | Software application for power and sample-size calculations for the TDT and ASP tests under a wide variety of ascertainment schemes. Uses the flexible genetic model of McGinnis. Most calculations are exact rather than asymptotic. (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran95, unix, ms-windows | is listed by: Genetic Analysis Software | nlx_154675 | SCR_004943 | Power and Sample-Size Calculations for the TDT and ASP Tests | 2026-02-15 09:18:58 | 3 | ||||||||
|
TDT/S-TDT Resource Report Resource Website 1+ mentions |
TDT/S-TDT (RRID:SCR_005548) | TDT/S-TDT | software application, software resource | Software program that provides separate results for TDT, S-TDT, and the combined (overall) test, as appropriate. (entry from Genetic Analysis Software) | gene, genetic, genomic, java, ms-windows, (95/nt) | is listed by: Genetic Analysis Software | nlx_154679 | SCR_005548 | Transmission Disequilibrium Test and Sib Transmission Disequilibrium Test | 2026-02-15 09:18:59 | 3 | ||||||||
|
PEDSCRIPT Resource Report Resource Website |
PEDSCRIPT (RRID:SCR_004571) | PEDSCRIPT | software application, software resource | Software tool that allows scripting of simple modifications to pedigree files. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154528 | SCR_004571 | 2026-02-15 09:18:50 | 0 | |||||||||
|
HAPLOBLOCKFINDER Resource Report Resource Website 1+ mentions |
HAPLOBLOCKFINDER (RRID:SCR_005844) | HAPLOBLOCKFINDER | software application, software resource | Software package for haplotype block identification, visualization and htSNP selection. It can also compare the haplotype block structure with local LD pattern. The program can be either run as a web service, or standalone executables on local machine. (entry from Genetic Analysis Software) | gene, genetic, genomic, c and perl, unix, ms-windows | is listed by: Genetic Analysis Software | nlx_154380 | SCR_005844 | 2026-02-15 09:19:05 | 6 | |||||||||
|
POPGEN Resource Report Resource Website 100+ mentions |
POPGEN (RRID:SCR_007315) | software application, software resource | An R package that specifically focuses on statistical and population genetics methods. The motivation behind the package is to produce an easy to use interface to many of the commonly used methods and models used in statistical and population genetics and an alternative interface for some of the methodology produced by our group. (entry from Genetic Analysis Software) | gene, genetic, genomic, r | is listed by: Genetic Analysis Software | nlx_154543, SCR_009374, nlx_154596 | http://mathgen.stats.ox.ac.uk/software.html, https://cran.r-project.org/web/packages/popgen/index.html | SCR_007315 | R/POPGEN | 2026-02-15 09:19:32 | 198 | ||||||||
|
HAPMIXMAP Resource Report Resource Website |
HAPMIXMAP (RRID:SCR_006066) | HAPMIXMAP | software application, software resource | Software application for modelling extended haplotypes in genetic association studies, similar to the FASTPHASE program. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154391 | SCR_006066 | 2026-02-15 09:19:09 | 0 | |||||||||
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LDHAT Resource Report Resource Website 10+ mentions |
LDHAT (RRID:SCR_006298) | LDHAT | software application, software resource | Software package for the analysis of recombination rates from population genetic data (entry from Genetic Analysis Software) | gene, genetic, genomic, c, dos | is listed by: Genetic Analysis Software | nlx_154423 | SCR_006298 | 2026-02-15 09:19:24 | 45 | |||||||||
|
VARSCAN Resource Report Resource Website 1000+ mentions |
VARSCAN (RRID:SCR_006849) | VarScan | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on March 7,2024. Platform-independent, technology-independent software tool for identifying SNPs and indels in massively parallel sequencing of individual and pooled samples. Given data for a single sample, VarScan identifies and filters germline variants based on read counts, base quality, and allele frequency. Given data for a tumor-normal pair, VarScan also determines the somatic status of each variant (Germline, Somatic, or LOH) by comparing read counts between samples. (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic, java, illumina, solid, life/pgm, roche/454, next-generation sequencing, variant, mutation caller, exome, whole-genome, snp, copy number alteration, somatic mutation, subclonal mutation, mutation, bio.tools |
is listed by: OMICtools is listed by: Genetic Analysis Software is listed by: Debian is listed by: bio.tools has parent organization: SourceForge has parent organization: Washington University in St. Louis; Missouri; USA |
PMID:22300766 PMID:19542151 DOI:10.1101/gr.129684.111 |
THIS RESOURCE IS NO LONGER IN SERVICE | , nlx_154687, biotools:varscan, OMICS_00094 | http://varscan.sourceforge.net/ http://dkoboldt.github.io/varscan/ https://bio.tools/varscan https://sources.debian.org/src/varscan/ |
http://genome.wustl.edu/software/varscan | SCR_006849 | Varscan2, VarScan - variant detection in massively parallel sequencing data, Varscan | 2026-02-15 09:19:20 | 1769 | ||||
|
LSP Resource Report The record is no longer available at this source. |
LSP (RRID:SCR_007059) | LSP | software application, software resource | Software application that is part of the LINKAGE auxiliary programs (entry from Genetic Analysis Software) | gene, genetic, genomic, c and pascal, unix, vms, ms-dos, os2 | is listed by: Genetic Analysis Software | SCR_007059 | Linkage Setup Program | 2026-02-15 09:19:21 | 0 | |||||||||
|
RTDT Resource Report Resource Website 10+ mentions |
RTDT (RRID:SCR_007336) | RTDT | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, matlab, c++ | is listed by: Genetic Analysis Software | nlx_154579 | SCR_007336 | Robust Transmission/Disequilibrium Test | 2026-02-15 09:19:24 | 17 | ||||||||
|
TKMAP Resource Report Resource Website |
TKMAP (RRID:SCR_007457) | TKMAP | software application, software resource | Software program for drawing genetic maps (entry from Genetic Analysis Software) | gene, genetic, genomic, based on biotk which is based on tcl/tk | is listed by: Genetic Analysis Software | nlx_154026 | SCR_007457 | 2026-02-15 09:19:36 | 0 | |||||||||
|
FASTLINK Resource Report Resource Website 1+ mentions |
FASTLINK (RRID:SCR_007042) | software application, software resource | FASTLINK is significantly modified and improved version of main programs of LINKAGE that runs much faster sequentially, can run in parallel, allows the user to recover gracefully from a computer crash, and provides abundant new documentation. | Genetic linkage analysis, map genes, find location, disease, genes |
is listed by: Genetic Analysis Software is related to: LINKAGE |
nlx_154428 | https://www.jurgott.org/linkage/LinkagePC.html | SCR_007042 | FASTLINK | 2026-02-15 09:19:21 | 2 | ||||||||
|
BEAM Resource Report Resource Website 500+ mentions |
BEAM (RRID:SCR_007258) | BEAM | software application, software resource | Software application that treats the disease-associated markers and their interactions via a bayesian partitioning model and computes, via Markov chain Monte Carlo, the posterior probability that each marker set is associated with the disease. (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, unix, linux, dos | is listed by: Genetic Analysis Software | nlx_154240 | SCR_007258 | Bayesian Epistasis Association Mapping | 2026-02-15 09:19:31 | 651 |
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