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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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R/LUCA Resource Report Resource Website |
R/LUCA (RRID:SCR_009369) | R/LUCA | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154591 | http://stat-db.stat.sfu.ca:8080/statgen/research/luca/ | SCR_009369 | Likelihood Under Covariate Assumptions | 2026-02-15 09:19:42 | 0 | |||||||
|
R/GAP Resource Report Resource Website 1+ mentions |
R/GAP (RRID:SCR_009364) | R/GAP | software application, software resource | An integrated software package for genetic data analysis of both population and family data. Currently it contains functions for sample size calculations of both population-based and family-based designs, classic twin ACE/ADE/AE/CE models, probability of familial disease aggregation, kinship calculation, some statistics in linkage analysis, and association analysis involving one or more genetic markers including haplotype analysis with or without environmental covariates (entry from Genetic Analysis Software) | gene, genetic, genomic, r | is listed by: Genetic Analysis Software | nlx_154583 | SCR_009364 | R/Genetic Analysis Package | 2026-02-15 09:20:07 | 1 | ||||||||
|
R/HAPASSOC Resource Report Resource Website |
R/HAPASSOC (RRID:SCR_009365) | software application, software resource | Software application using a likelihood approach to inference of haplotype and nongenetic effects and their interactions in generalized linear models of disease penetrance, when haplotype phase is unknown for some subjects. Parameter estimates are obtained by use of an expectation-maximization (EM) algorithm and standard errors are calculated using Louis'' formula. (entry from Genetic Analysis Software) | gene, genetic, genomic, r | is listed by: Genetic Analysis Software | nlx_154587, SCR_009219, nlx_154374 | http://stat-db.stat.sfu.ca:8080/statgen/research/hapassoc | SCR_009365 | HAPASSOC | 2026-02-15 09:20:01 | 0 | ||||||||
|
RHMAP Resource Report Resource Website 1+ mentions |
RHMAP (RRID:SCR_009360) | RHMAP | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran77 | is listed by: Genetic Analysis Software | nlx_154575 | SCR_009360 | Radiation Hybrid Map | 2026-02-15 09:20:01 | 3 | ||||||||
|
PDT Resource Report Resource Website 1+ mentions |
PDT (RRID:SCR_009319) | PDT | software application, software resource | Software analysis program to evaluate evidence of linkage disequilibrium (LD) in general pedigree data. All family data may be used without nullifying the validity of the association test, even when there is more than one affected in a family. The PDT program performs both allele-specific and genotype-specific LD analysis of individual markers. Version 5.1 adds the ability to perform genotype-specific analysis over marker sets. (entry from Genetic Analysis Software) | gene, genetic, genomic, unix, solaris | is listed by: Genetic Analysis Software | nlx_154513 | SCR_009319 | pedigree disequilibrium test | 2026-02-15 09:19:42 | 2 | ||||||||
|
PDA Resource Report Resource Website |
PDA (RRID:SCR_009317) | PDA | software application, software resource | Software tool for analyses of pooled DNA data (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154511 | SCR_009317 | Pooled DNA Analyzer | 2026-02-15 09:20:06 | 0 | ||||||||
|
PDPSYS Resource Report Resource Website |
PDPSYS (RRID:SCR_009318) | PDPSYS | software application, software resource | Software application that is a Windows-based system designed for pedigree data management, providing a graphical interface for pedigree construction and output. (entry from Genetic Analysis Software) | gene, genetic, genomic, visual basic, ms-access, ms-windows, (95) | is listed by: Genetic Analysis Software | nlx_154512 | SCR_009318 | Pedigree Data Processing SYStem | 2026-02-15 09:20:00 | 0 | ||||||||
|
PAWE Resource Report Resource Website 10+ mentions |
PAWE (RRID:SCR_009316) | PAWE | software application, software resource | Software application for power and sample size calculations for genetic case-control association studies allowing for errors (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154510 | SCR_009316 | Power for Association With Error | 2026-02-15 09:20:10 | 11 | ||||||||
|
MAPL Resource Report Resource Website 10+ mentions |
MAPL (RRID:SCR_009278) | MAPL | software application, software resource | Software programs that allow a user to get results on segregation ratio, linkage test, recombination value, grouping of markers, ordering of markers by metric multidimensional scaling, drawing map and graphical genotype. ALso QTL analysis by interval mapping and ANOVA are possible. (entry from Genetic Analysis Software) | gene, genetic, genomic, visual basic, (v5, professional), ms-windows, (95/98) | is listed by: Genetic Analysis Software | nlx_154459 | SCR_009278 | MAPping and QTL analysis | 2026-02-15 09:20:06 | 15 | ||||||||
|
NUCULAR Resource Report Resource Website |
NUCULAR (RRID:SCR_009311) | NUCULAR | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. Software program that splits extended pedigrees into nuclear families, with the option of recoding all sibs as half-sibs with distinct mothers of fathers. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154501 | SCR_009311 | 2026-02-15 09:20:10 | 0 | ||||||||
|
MAPDRAW Resource Report Resource Website 50+ mentions |
MAPDRAW (RRID:SCR_009276) | MAPDRAW | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 11, 2023. Software application that draws genetic linkage maps on PC same as what MAPMAKER does on Mac. (entry from Genetic Analysis Software) | gene, genetic, genomic, microsoft visual basic, excel macro, ms-windows | is listed by: Genetic Analysis Software | PMID:15639879 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154457 | SCR_009276 | 2026-02-15 09:19:41 | 98 | |||||||
|
MUTAGENESYS Resource Report Resource Website |
MUTAGENESYS (RRID:SCR_009309) | MUTAGENESYS | software application, software resource | Software application that uses genome-wide genotype data to estimate disease susceptibility. Our system integrates three data sources: HapMap, whole-genome marker correlation data, and OMIM database. It accepts SNP data of individuals as query input and delivers disease susceptibility hypotheses even if the original set of typed SNPs is incomplete. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154499 | SCR_009309 | 2026-02-15 09:20:00 | 0 | |||||||||
|
MULTIMAPPER/OUTBRED Resource Report Resource Website |
MULTIMAPPER/OUTBRED (RRID:SCR_009306) | MULTIMAPPER/OUTBRED | software application, software resource | Bayesian QTL mapping software for analysing backcross and F2 data from designed crossing experiments of outbred lines (entry from Genetic Analysis Software) | gene, genetic, genomic, c | is listed by: Genetic Analysis Software | PMID:10101181 | nlx_154496 | SCR_009306 | 2026-02-15 09:19:41 | 0 | ||||||||
|
MULTIPOPTAGSELECT Resource Report Resource Website 1+ mentions |
MULTIPOPTAGSELECT (RRID:SCR_009307) | MULTIPOPTAGSELECT | software application, software resource | Software program that selects a near-minimal set of tagging single-nucleotide polymorphisms (tagSNPs) that account for all observed patterns of linkage disequilibrium (LD) in multiple populations. (entry from Genetic Analysis Software) | gene, genetic, genomic, perl | is listed by: Genetic Analysis Software | nlx_154497 | SCR_009307 | 2026-02-15 09:20:10 | 1 | |||||||||
|
MULTIDISEQ Resource Report Resource Website |
MULTIDISEQ (RRID:SCR_009304) | MULTIDISEQ | software application, software resource | A multipoint linkage analysis software which allows Marker-Marker LD (entry from Genetic Analysis Software) | gene, genetic, genomic, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
nlx_154494, biotools:multidiseq | https://bio.tools/multidiseq | SCR_009304 | 2026-02-15 09:20:06 | 0 | ||||||||
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MULTIMAPPER Resource Report Resource Website 1+ mentions |
MULTIMAPPER (RRID:SCR_009305) | MULTIMAPPER | software application, software resource | Bayesian QTL mapping software for analysing backcross, double haploid, and F2 data from designed crossing experiments of inbred lines (entry from Genetic Analysis Software) | gene, genetic, genomic, c | is listed by: Genetic Analysis Software | nlx_154495 | SCR_009305 | 2026-02-15 09:20:00 | 1 | |||||||||
|
MPDA Resource Report Resource Website 10+ mentions |
MPDA (RRID:SCR_009303) | MPDA | software application, software resource | A tool for analyzing hybridization intensity data from microarray-based pooled DNA experiments. MPDA was developed under the software platform, MATLABR, and provided user-friendly interfaces adapted to Windows systems (Windows 98, Windows 2000 and Windows XP). or users without installing software MATLABR, we also developed stand-alone executables generated via the MATLABR compiler. MPDA provides four major functions: (1) Whole-genome DNA amplification/hybridization analysis, (2) Allele frequency estimation, (3) Association mapping, (4) Allelic imbalance detection. Graphic and numerical outputs from MPDA support global and detailed inspection for bulk of genomic data. (entry from Genetic Analysis Software) | gene, genetic, genomic, matlabr, ms-windows, (windows98/2000/xp), bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
biotools:mpda, nlx_154492 | https://bio.tools/mpda | SCR_009303 | Microarray Pooled DNA Analyser | 2026-02-15 09:20:10 | 12 | |||||||
|
SNP CHART Resource Report Resource Website |
SNP CHART (RRID:SCR_009386) | software application, software resource | Software application to generate visual patterns that can be easily interpreted as a single specific Single Nucleotide Polymorphism (SNP) genotype, based on reiterative pattern recognition from validated SNP data (entry from Genetic Analysis Software) | gene, genetic, genomic, java, web-based | is listed by: Genetic Analysis Software | nlx_154624 | SCR_009386 | 2026-02-15 09:20:07 | 0 | ||||||||||
|
SIMHAP Resource Report Resource Website 1+ mentions |
SIMHAP (RRID:SCR_009384) | SimHap | software application, software resource | Software application providing a comprehensive modelling framework and a multiple-imputation approach to haplotypic analysis of population-based data. It uses biallelic SNP genotype data to impute haplotype frequencies at the individual level. SimHap also tests for haplotype associations with outcomes of interest while incorporating the uncertainty around inferred haplotypes into the modelling procedure. SimHap allows epidemiological (ie, non-genetic) and both single SNP and haplotype association analyses of quantitative Normal, binary, longitudinal and right-censored outcomes under a range of genetic models. SimHap can accommodate large data sets, and can model genetic and environmental effects, including complex haplotype:environment interactions. SimHap features cross-platform functionality via Java, and a sophisticated graphical user interface (GUI). SimHap will also perform association analysis on more simple epidemiological models, with or without the inclusion of genetic covariates. (entry from Genetic Analysis Software) | gene, genetic, genomic, java |
is listed by: OMICtools is listed by: Genetic Analysis Software has parent organization: University of Western Australia; Perth; Australia |
PMID:19109877 | nlx_154621, OMICS_00246 | http://www.genepi.org.au/simhap | SCR_009384 | SIMulation-based HAPlotypic analysis | 2026-02-15 09:19:43 | 2 | ||||||
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SIB-PAIR Resource Report Resource Website 1+ mentions |
SIB-PAIR (RRID:SCR_009382) | software application, software resource | Software program that performs a number of simple analyses of family data that tend to be nonparametric or robust in nature, includes IBD and IBS based APM, Haseman-Elston sib pair, TDT and association analyses. (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran77 | is listed by: Genetic Analysis Software | nlx_154617 | http://www2.qimr.edu.au/davidD | SCR_009382 | 2026-02-15 09:20:07 | 9 |
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