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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Preventing Early Renal Loss in Diabetes (PERL) Resource Report Resource Website 1+ mentions |
Preventing Early Renal Loss in Diabetes (PERL) (RRID:SCR_015862) | PERL | data or information resource, topical portal, disease-related portal, project portal, portal, data set | PERL is a clinical trial for people with type 1 diabetes who have early signs of kidney problems. Its goal is to test a new way to reduce loss of kidney function using a safe and inexpensive medicine. | kidney, type 1 diabetes, diabetes, clinical trial, medication |
is listed by: NIDDK Information Network (dkNET) is listed by: Diabetes Research Centers |
Type 1 diabetes, Diabetes, Diabetic kidney disease | NIDDK UC4 DK101108 | Available to the scientific community | SCR_015862 | Preventing Early Renal Loss in Diabetes | 2026-02-17 10:02:37 | 2 | ||||||
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CalR Resource Report Resource Website 100+ mentions |
CalR (RRID:SCR_015849) | software application, web application, data processing software, data analysis software, software resource, data visualization software | A Web-based Analysis Tool for Indirect Calorimetry Experiments which measure physiological energy balance. It is a web application for indirect calorimetry analysis which generates customizable time, bar and regression plots for calorimetry data using two-, three-, and four-group templates. | indirect, calorimerty, analysis, visualization, energy, balance, food intake, energy expenditure, metabolism, metabolic phenotyping, CLAMS, PhenoMaster, Prometheon, biostatistics, ANCOVA, reproducibility, Columbus Instruments, Sable Systems, TSE | is related to: Harvard University; Cambridge; United States | Mouse Metabolic Phenotyping Center ; Harvard Digestive Disease Center ; NIDDK |
DOI:10.1101/213967 | Freely available, Public | https://calrapp.org | SCR_015849 | A Web Application for Indirect Calorimetry Analysis | 2026-02-17 10:03:19 | 196 | ||||||
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microbeMASST Resource Report Resource Website 1+ mentions |
microbeMASST (RRID:SCR_024713) | data access protocol, web service, software resource | Web taxonomically informed mass spectrometry search tool, tackles limited microbial metabolite annotation in untargeted metabolomics experiments. Leveraging database of over 60,000 microbial monocultures, users can search known and unknown MS/MS spectra and link them to their respective microbial producers via MS/MS fragmentation patterns. | Identification of microbial derived metabolites, microbial metabolomics data, microbial metabolite annotation, taxonomy, mass spectrometry search tool, searching tool, bacteria, fungi, metabolomics, microbiome, search known and unknown MS/MS spectra, | is related to: GNPS MASST | NIDDK U24DK133658; NIA U19AG063744; NIGMS 1DP2GM137413; Korean Government ; Austrian Science Fund ; German Research Foundation ; Sao Paulo Research Foundation ; Mexican National Council of Science and Technology ; NIGMS R01GM107550; NSF ; Research Council of Norway ; NIAID R01AI167860; NIDDK T32DK007202; NIGMS 1R01GM132649; NIGMS R35GM142938; NIDDK U01DK119702; NIH Office of the Director S10 OD021750; NLM 1R01LM013115 |
PMID:37577622 | Free, Freely available, | SCR_024713 | 2026-02-17 10:04:52 | 6 | ||||||||
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Sequencing of Idd regions in the NOD mouse genome Resource Report Resource Website 1+ mentions |
Sequencing of Idd regions in the NOD mouse genome (RRID:SCR_001483) | Sequencing of Idd regions in the NOD mouse genome | data or information resource, resource, data set | Genetic variations associated with type 1 diabetes identified by sequencing regions of the non-obese diabetic (NOD) mouse genome and comparing them with the same areas of a diabetes-resistant C57BL/6J reference mouse allowing identification of single nucleotide polymorphisms (SNPs) or other genomic variations putatively associated with diabetes in mice. Finished clones from the targeted insulin-dependent diabetes (Idd) candidate regions are displayed in the NOD clone sequence section of the website, where they can be downloaded either as individual clone sequences or larger contigs that make up the accession golden path (AGP). All sequences are publicly available via the International Nucleotide Sequence Database Collaboration. Two NOD mouse BAC libraries were constructed and the BAC ends sequenced. Clones from the DIL NOD BAC library constructed by RIKEN Genomic Sciences Centre (Japan) in conjunction with the Diabetes and Inflammation Laboratory (DIL) (University of Cambridge) from the NOD/MrkTac mouse strain are designated DIL. Clones from the CHORI-29 NOD BAC library constructed by Pieter de Jong (Children's Hospital, Oakland, California, USA) from the NOD/ShiLtJ mouse strain are designated CHORI-29. All NOD mouse BAC end-sequences have been submitted to the International Nucleotide Sequence Database Consortium (INSDC), deposited in the NCBI trace archive. They have generated a clone map from these two libraries by mapping the BAC end-sequences to the latest assembly of the C57BL/6J mouse reference genome sequence. These BAC end-sequence alignments can then be visualized in the Ensembl mouse genome browser where the alignments of both NOD BAC libraries can be accessed through the Distributed Annotation System (DAS). The Mouse Genomes Project has used the Illumina platform to sequence the entire NOD/ShiLtJ genome and this should help to position unaligned BAC end-sequences to novel non-reference regions of the NOD genome. Further information about the BAC end-sequences, such as their alignment, variation data and Ensembl gene coverage, can be obtained from the NOD mouse ftp site. | genome, sequencing, genome sequencing, insulin-dependent diabetes, c57bl/6j, single nucleotide polymorphism, genetic variation, bacterial artificial chromosome, sequence, gene, animal model, clone, annotation, contig |
lists: VEGA is listed by: NIDDK Information Network (dkNET) has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom |
Type 1 diabetes, Diabetes | NIAID AI 15416; NIDDK ; JDRF |
PMID:23729657 | Free, Freely available | nlx_152738 | http://www.sanger.ac.uk/resources/mouse/nod/ | SCR_001483 | Sequencing of Insulin-dependent diabetes regions in the NOD mouse genome | 2026-02-17 09:59:40 | 1 | |||
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Metscape Resource Report Resource Website 100+ mentions |
Metscape (RRID:SCR_014687) | resource, source code, software resource | A software program that allows users to visualize and interpret human metabolim and expression profiling data by providing users with a bioinformatics framework. Its features include bulding and analyzing networks of genes and compounds, identifying enriched pathways from expression profiling data, and visualizing changes in metabolite data. | metabolomics, metabolomics tool, visualization, expression profiling, gene, compound, metabolism, human |
is listed by: Metabolomics Workbench is listed by: SoftCite |
NIDDK U24 DK097153; NIDDK P30DK089503 |
PMID:22135418 | Freely available | SCR_014687 | 2026-02-17 10:02:16 | 145 | ||||||||
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MOPED - Model Organism Protein Expression Database Resource Report Resource Website 1+ mentions |
MOPED - Model Organism Protein Expression Database (RRID:SCR_006065) | MOPED | data or information resource, resource, production service resource, analysis service resource, database, service resource, data analysis service | An expanding multi-omics resource that enables rapid browsing of gene and protein expression information from publicly available studies on humans and model organisms. MOPED also serves the greater research community by enabling users to visualize their own expression data, compare it with existing studies, and share it with others via private accounts. MOPED uniquely provides gene and protein level expression data, meta-analysis capabilities and quantitative data from standardized analysis utilizing SPIRE (Systematic Protein Investigative Research Environment). Data can be queried for specific genes and proteins; browsed based on organism, tissue, localization and condition; and sorted by false discovery rate and expression. MOPED links to various gene, protein, and pathway databases, including GeneCards, Entrez, UniProt, KEGG and Reactome. The current version of MOPED (MOPED 2.5) The current version of MOPED (MOPED 2.5, 2014) contains approximately 5 million total records including ~260 experiments and ~390 conditions. | protein expression, gene expression, model organism, gene, protein, pathway, proteomics, transcriptomics, data visualization, overlap plot, heatmap, dot plot, data sharing, protein localization, gene localization |
is related to: GeneCards is related to: UniProt is related to: KEGG is related to: Reactome |
Robert B McMillen Foundation ; NSF DBI0544757; NIGMS 5R01GM076680; NIDDK UO1DK072473; NIDDK 1U01DK089571 |
PMID:24350770 PMID:22139914 |
nlx_151470 | SCR_006065 | Multi-Omics Profiling Expression Database | 2026-02-17 10:00:51 | 2 | ||||||
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Indiana University Cooperative Center of Excellence in Hematology Resource Report Resource Website |
Indiana University Cooperative Center of Excellence in Hematology (RRID:SCR_015343) | data or information resource, topical portal, resource, disease-related portal, access service resource, service resource, portal | Research center for hematology research. It provides services through four scientific core facilities: the Experimental Mouse Resources Core, the Optical Microscopy Services Core, the Angiogenesis Core, and the Flow Cytometry Core in addition to the Enrichment Program of the Center. | hematology research, hematology research center, online portal, niddk |
is listed by: NIDDK Information Network (dkNET) has parent organization: Indiana University School of Medicine; Indiana; USA is parent organization of: Indiana University Cooperative Center of Excellence in Hematology Experimental Mouse Resources Core is parent organization of: Indiana University Cooperative Center of Excellence in Hematology Angiogenesis Core is parent organization of: Indiana University Cooperative Center of Excellence in Hematology Optical Microscopy Core has organization facet: Indiana University Cooperative Center of Excellence in Hematology Experimental Mouse Resources Core has organization facet: Indiana University Cooperative Center of Excellence in Hematology Optical Microscopy Core has organization facet: Indiana University Cooperative Center of Excellence in Hematology Angiogenesis Core has organization facet: Indiana University School of Medicine Flow Cytometry Core Facility is organization facet of: Hematology Centers |
NIDDK U54DK106846 | Available to the research community | SCR_015343 | 2026-02-17 10:02:50 | 0 | |||||||||
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Boston Children's Hospital Center of Excellence in Molecular Hematology Resource Report Resource Website |
Boston Children's Hospital Center of Excellence in Molecular Hematology (RRID:SCR_015348) | data or information resource, topical portal, resource, disease-related portal, access service resource, service resource, portal | Research center investigating molecular hematology through mouse and zebrafish models. | hematology research, hematology research center, online portal |
is listed by: NIDDK Information Network (dkNET) is parent organization of: Boston Children's Hospital Center of Excellence in Molecular Hematology Zebrafish Core is parent organization of: Boston Children's Hospital Center of Excellence in Molecular Hematology Stem Cell Engineering and Analysis Core is parent organization of: Boston Children's Hospital Center of Excellence in Molecular Hematology Mouse Embryonic Stem(ES) Cell and Gene Targeting Core has organization facet: Boston Children's Hospital Center of Excellence in Molecular Hematology Mouse Embryonic Stem(ES) Cell and Gene Targeting Core has organization facet: Boston Children's Hospital Center of Excellence in Molecular Hematology Zebrafish Core has organization facet: Boston Children's Hospital Center of Excellence in Molecular Hematology Stem Cell Engineering and Analysis Core is organization facet of: Hematology Centers |
NIDDK U54DK110805 | Available to the research community | SCR_015348 | 2026-02-17 10:03:13 | 0 | |||||||||
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Columbia Diabetes Research Center Resource Report Resource Website |
Columbia Diabetes Research Center (RRID:SCR_015075) | data or information resource, topical portal, resource, disease-related portal, access service resource, service resource, portal | Research center which provides research support for investigators pursuing research on diabetes and metabolic disorders. | metabolic disorders, diabetes research |
is listed by: NIDDK Information Network (dkNET) is affiliated with: Diabetes Research Centers is parent organization of: Columbia Diabetes Research Center Mouse Metabolic Function and Phenotyping Core Facility has organization facet: Columbia Diabetes Research Center Flow Cytometry and Cell Sorting Core Facility has organization facet: Columbia Diabetes Research Center Translational Biomarker Analytical Core Facility has organization facet: Columbia Diabetes Research Center Mouse Metabolic Function and Phenotyping Core Facility has organization facet: Columbia Diabetes Research Center Advanced Tissue Pathology and Imaging Core Facility is organization facet of: Diabetes Research Centers |
Diabetes | NIDDK P30DK063608 | Available to the research community | SCR_015075 | 2026-02-17 10:02:48 | 0 | ||||||||
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SCDE Resource Report Resource Website 10+ mentions |
SCDE (RRID:SCR_015952) | software application, data processing software, data analysis software, software resource, sequence analysis software | Software package that implements a set of statistical methods for analyzing single-cell RNA-seq data, including differential expression analysis (Kharchenko et al.) and pathway and geneset overdispersion analysis (Fan et al.) | statistic, single, cell, rna, seq, rnaseq, differential, analysis, pathway, gene, geneset, dispersion, overdispersion, bayesian, expression, magnitude | NIA K25 AG037596; NIDDK R01 DK050234; NHLBI R01 HL097794; Leukemia and Lymphoma Research UK ; Leukemia and Lymphoma Society |
PMID:24836921 | Free, Available for download | SCR_015952 | 2026-02-17 10:03:14 | 32 | |||||||||
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Cystic Fibrosis Center University of Pittsburgh Resource Report Resource Website 1+ mentions |
Cystic Fibrosis Center University of Pittsburgh (RRID:SCR_015400) | data or information resource, topical portal, resource, disease-related portal, access service resource, service resource, portal | Research center whose goal is to understand and translate the basic mechanisms of cystic fibrosis. It uses the molecular and cell biology of CFTR, CFTR mutants, infection, and inflammation with the overall theme of translating preclinical science into clinical investigations. | cystic fibrosis mechanism, cystic fibrosis translational research, cystic fibrosis research |
is listed by: NIDDK Information Network (dkNET) has parent organization: University of Pittsburgh; Pennsylvania; USA is organization facet of: Cystic Fibrosis Research and Translation Centers |
Cystic Fibrosis | NIDDK P30DK072506; Cystic Fibrosis Foundation Research Development Program R883-CR07 |
Available to the research community | SCR_015400 | 2026-02-17 10:02:33 | 1 | ||||||||
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Indiana Diabetes Research Center Resource Report Resource Website |
Indiana Diabetes Research Center (RRID:SCR_015080) | data or information resource, topical portal, resource, disease-related portal, access service resource, service resource, portal | Center that includes over seventy investigators engaged in basic and translational research in diabetes and related metabolic disorders, and their complications. It contains four Research Cores that serve for innovative and translational research. | metabolic diseases, diabetes, diabetes research |
is listed by: NIDDK Information Network (dkNET) is affiliated with: Diabetes Research Centers is parent organization of: Indiana Diabetes Research Center Swine Core is parent organization of: Indiana Diabetes Research Center Translation Core Facility is parent organization of: Indiana University School of Medicine Center for Diabetes and Metabolic Diseases Islet and Physiology Core Facility has organization facet: Indiana University School of Medicine Center for Diabetes and Metabolic Diseases Islet and Physiology Core Facility has organization facet: Indiana Diabetes Research Center Microscopy Core Facility has organization facet: Indiana Diabetes Research Center Swine Core has organization facet: Indiana Diabetes Research Center Translation Core Facility is organization facet of: Diabetes Research Centers |
Diabetes | IUPUI Signature Center Initiative ; NIDDK P30DK097512 |
Available to the research community | SCR_015080 | 2026-02-17 10:02:46 | 0 | ||||||||
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Human Islet Research Network (HIRN) Resource Report Resource Website 100+ mentions |
Human Islet Research Network (HIRN) (RRID:SCR_014393) | HIRN | data or information resource, topical portal, portal, disease-related portal | Network helps to organize and support collaborative research related to loss of functional beta cell mass in Type 1 Diabetes (T1D). Project consists of four independent research initiatives: Consortium on Beta Cell Death and Survival (CBDS), Consortium on Human Islet Biomimetics (CHIB), Consortium on Modeling Autoimmune Interactions (CMAI), Consortium on Targeting and Regeneration (CTAR), and Human Pancreas Analysis Program (HPAP). | islet, human, consortia, functional loss, beta cell, research network, funding resource |
is used by: Hypothesis Center is listed by: NIDDK Information Network (dkNET) is related to: Pancreatlas is related to: scPancMeta App is related to: PANC-DB has organization facet: HIRN Consortium on Beta Cell Death and Survival has organization facet: HIRN Consortium on Human Islet Biomimetics has organization facet: HIRN Consortium on Modeling Autoimmune Interactions has organization facet: HIRN Consortium on Targeting and Regeneration has organization facet: HIRN Human Pancreas Analysis Program has organization facet: HIRN Bioinformatics Center has organization facet: HIRN Coordinating Center has organization facet: HIRN Human Pancreas Analysis Consortium |
Type 1 diabetes, Diabetes | NIDDK | SCR_014393 | Human Islet Research Network | 2026-02-17 10:02:47 | 222 | |||||||
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APA-Scan Resource Report Resource Website |
APA-Scan (RRID:SCR_022974) | software application, data processing software, data analysis software, software resource, data visualization software | Software Python tool for detection and visualization of annotated and potential alternative polyadenylation events in downstream 3'-UTR of gene among two different biological conditions. Used for detection and visualization of 3'-UTR alternative polyadenylation with RNA-seq and 3'-end-seq data. | annotated and potential alternative polyadenylation events, gene downstream 3'-UTR, RNA-seq and 3'-end-seq data, two different biological conditions, polyadenylation events | NSF FET2003749; NIGMS R01GM113952; NIDDK DK097771 |
PMID:36171568 | Free, Available for download, Freely available | SCR_022974 | 2026-02-17 10:04:29 | 0 | |||||||||
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GeneRanger Resource Report Resource Website |
GeneRanger (RRID:SCR_023622) | data access protocol, web service, software resource | Web server application that provides access to processed data about expression of human genes and proteins across human cell types, tissues, and cell lines from several atlases. Used to explore single gene expression across tissues and cell types. | explore single gene expression, gene expression across tissues and cell types, gene expression, |
is related to: TargetRanger has parent organization: Icahn School of Medicine at Mount Sinai; New York; USA |
NCI U24CA264250; NCI U24CA224260; NIDDK R01DK131525; NIH Office of the Director OT2OD030160; NIDDK RC2DK131995; NCI U24CA271114 |
PMID:37166966 | Free, Freely available | SCR_023622 | 2026-02-17 10:04:29 | 0 | ||||||||
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TargetRanger Resource Report Resource Website 1+ mentions |
TargetRanger (RRID:SCR_023621) | data access protocol, web service, software resource | Web server application that identifies targets from user inputted RNA-seq samples collected from cells we wish to target. By comparing inputted samples with processed RNA-seq and proteomics data from several atlases, TargetRanger identifies genes that are highly expressed in target cells while lowly expressed across normal human cell types, tissues, and cell lines. | identify targets, identify genes, user inputted RNA-seq samples, target cells, proteomics data, human cells, |
is related to: GeneRanger has parent organization: Icahn School of Medicine at Mount Sinai; New York; USA |
NCI U24CA264250; NCI U24CA224260; NIDDK R01DK131525; NIH Office of the Director OT2OD030160; NIDDK RC2DK131995; NCI U24CA271114 |
PMID:37166966 | Free, Freely available | https://maayanlab.github.io/Workshop.io/generanger | SCR_023621 | 2026-02-17 10:03:57 | 2 | |||||||
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University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases Cell Culture Core Resource Report Resource Website |
University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases Cell Culture Core (RRID:SCR_015621) | biomaterial supply resource, cell repository, material resource | Core facility that maintains a centralized repository of cells and reagents pertinent to digestive, liver and pancreatic disease research. It also provides training for labs in new cell culture (2D and 3D) techniques. | digestive disease, liver disease, pancreatic disease, cell repository, reagent, cell culture |
is listed by: NIDDK Information Network (dkNET) has parent organization: University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases is organization facet of: University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases |
digestive disease, liver disease, pancreatic disease | NIDDK P30 DK050306 | Available to the research community | SCR_015621 | 2026-02-17 10:02:53 | 0 | ||||||||
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Assessment Serial Evaluation and Subsequent Sequelae in Acute Kidney Injury (ASSESS-AKI) Resource Report Resource Website |
Assessment Serial Evaluation and Subsequent Sequelae in Acute Kidney Injury (ASSESS-AKI) (RRID:SCR_014386) | ASSESS-AKI | data or information resource, resource, data set | A study which recruits patients with and without an episode of acute kidney injury during a hospitalization, and follows them longitudinally for major cardiac, renal and mortality events. An important aspect of the study is the prospective evaluation of potential biomarkers for renal and cardiac outcomes. | study, acute kidney injury, longitudinal, major cardiac event, major renal event, major mortality event, biomarker |
is listed by: NIDDK Research Resources is listed by: NIDDK Information Network (dkNET) |
NIDDK | Account required | http://www.niddk.nih.gov/research-funding/research-resources/Pages/default.aspx | SCR_014386 | Assessment Serial Evaluation and Subsequent Sequelae in Acute Kidney Injury | 2026-02-17 10:02:11 | 0 | ||||||
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UCSF Liver Center Resource Report Resource Website 1+ mentions |
UCSF Liver Center (RRID:SCR_015595) | data or information resource, portal, organization portal | Center whose goal is to integrate bench science with clinical investigation, in support of its vision to understand and cure human liver diseases. | UCSF, liver, liver disease |
is listed by: NIDDK Information Network (dkNET) is parent organization of: UCSF Liver Center Cell Biology Core is parent organization of: UCSF Liver Center Clinical & Translational Core is parent organization of: UCSF Liver Center Immunology Core is parent organization of: UCSF Liver Center Pathology & Imaging Core has organization facet: UCSF Liver Center Cell Biology Core has organization facet: UCSF Liver Center Clinical & Translational Core has organization facet: UCSF Liver Center Immunology Core has organization facet: UCSF Liver Center Pathology & Imaging Core is organization facet of: Digestive Disease Centers |
liver disease | NIDDK P30 DK026743 | Available to the research community | SCR_015595 | 2026-02-17 10:02:35 | 2 | ||||||||
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Vitamin D to Prevent Type 2 Diabetes (D2d) Resource Report Resource Website 1+ mentions |
Vitamin D to Prevent Type 2 Diabetes (D2d) (RRID:SCR_014382) | D2d | data or information resource, resource, data set | A study to determine whether vitamin D supplementation is safe and effective in delaying the onset of type 2 diabetes in people at risk for the disease and to gain a better understanding of how vitamin D affects glucose metabolism. | diabetes, vitamin d, supplement, prevention, glucose metabolism |
is listed by: NIDDK Research Resources is listed by: NIDDK Information Network (dkNET) |
Type 2 diabetes | NIDDK | Study is ongoing | http://www.niddk.nih.gov/research-funding/research-resources/Pages/default.aspx | SCR_014382 | Vitamin D to Prevent Type 2 Diabetes | 2026-02-17 10:02:10 | 1 |
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