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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
FingerID Resource Report Resource Website 10+ mentions |
FingerID (RRID:SCR_012077) | software resource | A metabolite identification software using tandem mass spectrometry and kernel methods. | standalone software, matlab, python |
is listed by: OMICtools has parent organization: SourceForge |
PMID:22815355 | GNU General Public License | OMICS_04649 | SCR_012077 | 2026-02-14 02:02:34 | 18 | ||||||||
|
ChiBE Resource Report Resource Website 1+ mentions |
ChiBE (RRID:SCR_012110) | software resource | An editing and visualization software tool for pathway models represented by the BioPAX format, using SBGN Process Description Language, based on Chisio. | mac os x, unix/linux, windows, java |
is listed by: OMICtools has parent organization: Google Code |
PMID:25086704 | Free, Public | OMICS_05454 | SCR_012110 | Chisio BioPAX Editor | 2026-02-14 02:02:10 | 3 | |||||||
|
proTRAC Resource Report Resource Website 10+ mentions |
proTRAC (RRID:SCR_012078) | software resource | A software which detects and analyses piRNA clusters based on quantifiable deviations from a hypothetical uniform distribution regarding the decisive piRNA cluster characteristics. | standalone software, perl |
is listed by: OMICtools has parent organization: SourceForge |
PMID:22233380 | Creative Commons License | OMICS_04874 | SCR_012078 | probabilistic TRacking and Analysis of Clusters | 2026-02-14 02:02:18 | 26 | |||||||
|
MOABS Resource Report Resource Website 100+ mentions |
MOABS (RRID:SCR_012071) | software resource | Software providing a complete, accurate and efficient solution for analysis of large scale base-resolution DNA methylation data, bisulfite sequencing or single molecule direct sequencing. |
is listed by: OMICtools has parent organization: Google Code |
PMID:24565500 | Free, Public | OMICS_04480 | SCR_012071 | MOdel based Analysis of Bisulfite Sequencing data | 2026-02-14 02:02:35 | 242 | ||||||||
|
NetMODE Resource Report Resource Website 1+ mentions |
NetMODE (RRID:SCR_012085) | software resource | Fast motif detection algorithm for subgraph size no more than 6. | standalone software |
is listed by: OMICtools has parent organization: SourceForge |
PMID:23272055 | OMICS_05019 | SCR_012085 | 2026-02-14 02:02:34 | 1 | |||||||||
|
FABIA Resource Report Resource Website 10+ mentions |
FABIA (RRID:SCR_012002) | FABIA | software resource | A model-based technique for biclustering that is clustering rows and columns simultaneously. | bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools |
PMID:20418340 | Free | OMICS_01797, biotools:fabia | https://bio.tools/fabia | SCR_012002 | Factor Analysis for Bicluster Acquisition | 2026-02-14 02:02:33 | 12 | |||||
|
APHL Resource Report Resource Website 10+ mentions |
APHL (RRID:SCR_012001) | APHL | nonprofit organization | Works to strengthen laboratories serving the public''s health in the US and globally. | is listed by: OMICtools | Wikidata: Q4810010, Crossref funder ID: 100008482, ISNI: 0000 0001 0029 6188, OMICS_01790, grid.422961.a | https://ror.org/04d0f7957 | SCR_012001 | Association of Public Health Laboratories | 2026-02-14 02:02:17 | 10 | ||||||||
|
SPINAL Resource Report Resource Website 50+ mentions |
SPINAL (RRID:SCR_012080) | software resource | Algorithm for the problem of globally aligning a pair of protein-protein interaction (PPI) networks. | standalone software, c++ |
is listed by: OMICtools has parent organization: Google Code |
PMID:23413436 | Free, Public | OMICS_04881 | SCR_012080 | 2026-02-14 02:02:09 | 73 | ||||||||
|
MCDL Resource Report Resource Website 1+ mentions |
MCDL (RRID:SCR_012084) | software resource | A small Java molecular viewer/editor for chemical structures, stored in Modular Chemical Descriptor Language linear notation. | applet, mac os x, unix/linux, windows, java |
is listed by: OMICtools has parent organization: SourceForge |
OMICS_05001 | SCR_012084 | 2026-02-14 02:02:09 | 2 | ||||||||||
|
GLARE Resource Report Resource Website 1+ mentions |
GLARE (RRID:SCR_012083) | software resource | A software that facilitates and improves the design of chemical combinatorial libraries. | standalone software |
is listed by: OMICtools has parent organization: SourceForge |
PMID:20981532 | Free, Public | OMICS_04992 | SCR_012083 | Global Library Assessment of REagents | 2026-02-14 02:02:35 | 5 | |||||||
|
1DegreeBio Resource Report Resource Website 10+ mentions |
1DegreeBio (RRID:SCR_011994) | software resource | A registry which provides links and reviews for material resources such as reagents, equipment, digital tools, and providers, as well as the companies that sell them. Users can search for specific materials or search by vendor, product, or service type. | registry, reagents, equipment, digital tool, marketplace, service provider, review |
is listed by: OMICtools is listed by: Connected Researchers is related to: Connected Researchers |
Free, Public | OMICS_01765 | SCR_011994 | 1degreebio, 1degreebio.org | 2026-02-14 02:02:31 | 13 | ||||||||
|
MFPaQ Resource Report Resource Website 10+ mentions |
MFPaQ (RRID:SCR_012049) | software resource | Software that allows fast and user-friendly verification of Mascot result files, as well as data quantification using isotopic labeling methods (SILAC/ICAT) or label free approaches (spectral counting, MS signal comparison). | standalone software, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: SourceForge |
PMID:17533220 | biotools:mfpaq, OMICS_02495 | https://bio.tools/mfpaq | SCR_012049 | Mascot File Parsing and Quantification | 2026-02-14 02:02:33 | 14 | |||||||
|
SearchGUI Resource Report Resource Website 100+ mentions |
SearchGUI (RRID:SCR_012054) | software resource | Software providing a user-friendly, lightweight and open-source graphical user interface for configuring and running the freely available OMSSA and X!Tandem search engines simultaneously. | mac os x, unix/linux, windows |
is listed by: OMICtools has parent organization: Google Code |
PMID:21337703 | Apache License | OMICS_03352 | SCR_012054 | 2026-02-14 02:02:17 | 154 | ||||||||
|
ProteoWizard Resource Report Resource Website 1000+ mentions |
ProteoWizard (RRID:SCR_012056) | software resource | Software that enables rapid tool creation by providing a robust, pluggable development framework that simplifies and unifies data file access, and performs standard proteomics and LCMS dataset computations. | standalone software, c++ |
is listed by: OMICtools is related to: Skyline has parent organization: SourceForge |
PMID:23051804 | Apache License | OMICS_03354 | SCR_012056 | 2026-02-14 02:02:09 | 3243 | ||||||||
|
ADTEx Resource Report Resource Website 50+ mentions |
ADTEx (RRID:SCR_012059) | software resource | A software tool for copy number variation (CNV) detection for whole-exome data from paired tumour/matched normal samples. | standalone software, python, r |
is listed by: OMICtools has parent organization: SourceForge |
PMID:23368785 | GNU General Public License | OMICS_03365 | SCR_012059 | 2026-02-14 02:02:34 | 90 | ||||||||
|
multiplierz Resource Report Resource Website 1+ mentions |
multiplierz (RRID:SCR_012058) | software resource | An open-source Python-based environment that provides a scriptable framework for efficient access to manufacturers'' proprietary data files via mzAPI. | python, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: SourceForge |
PMID:19874609 | GNU Lesser General Public License | biotools:multiplierz, OMICS_03360 | https://bio.tools/multiplierz | SCR_012058 | 2026-02-14 02:02:17 | 7 | |||||||
|
TE-locate Resource Report Resource Website 1+ mentions |
TE-locate (RRID:SCR_012063) | software resource | A software tool to locate all copies of sequences in a reference sequence using read-pairs. | java, perl |
is listed by: OMICtools has parent organization: SourceForge |
PMID:24832231 | OMICS_03507 | SCR_012063 | 2026-02-14 02:02:34 | 1 | |||||||||
|
LAITOR Resource Report Resource Website 1+ mentions |
LAITOR (RRID:SCR_012101) | software resource | A text mining software developed to find co-occurrence of biological entities (gene/protein terms) together with biointeractions and concepts term from customized dictionaries. | standalone software |
is listed by: OMICtools has parent organization: SourceForge |
PMID:20122157 | GNU General Public License | OMICS_05240 | SCR_012101 | 2026-02-14 02:02:36 | 1 | ||||||||
|
MatNMR Resource Report Resource Website 10+ mentions |
MatNMR (RRID:SCR_012060) | software resource | A highly flexible software toolbox for processing 1D and 2D NMR and EPR spectra under MATLAB, creating high-quality 1D, 2D or 3D plots from the spectra and printing them in every type of format that is supported by MATLAB. | standalone software |
is listed by: OMICtools has parent organization: SourceForge |
PMID:17448713 | OMICS_03375 | SCR_012060 | 2026-02-14 02:02:09 | 16 | |||||||||
|
GPU-Meta-Storms Resource Report Resource Website 1+ mentions |
GPU-Meta-Storms (RRID:SCR_012029) | GPU-Meta-Storms | software resource | Optimized GPU-based software to efficiently measure the quantitative phylogenetic similarity among massive amount of microbial community samples. | c++, parallel computation 4, cuda, structure similarity, metagenomic, phylogenetic, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: Chinese Academy of Sciences; Beijing; China |
PMID:24363375 | OMICS_02187, biotools:meta-storms | https://bio.tools/meta-storms | SCR_012029 | 2026-02-14 02:02:32 | 1 |
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