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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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PROFILER Resource Report Resource Website 1000+ mentions |
PROFILER (RRID:SCR_009339) | PROFILER | software resource, software application | A flexible software tool to generate the probability distribution of joint multilocus genotypes defined by sets of individuals within the pedigree and sets of markers within the framework map. (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic, linux, unix, solaris |
is listed by: Genetic Analysis Software is listed by: SoftCite |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154552 | SCR_009339 | 2026-02-13 10:56:23 | 1294 | ||||||||
|
Adobe Illustrator Resource Report Resource Website 10000+ mentions |
Adobe Illustrator (RRID:SCR_010279) | Illustrator CC | software resource, software toolkit, software application | Vector graphics software to create digital graphics, illustrations, and typography for several types of media: print, web, interactive, video, and mobile. | vector graphics, graphics, illustration, typography, adobe, software |
uses: National Gene Vector Laboratories is listed by: SoftCite is related to: Adobe Illustrator |
SCR_014198, nlx_157287 | http://www.adobe.com/products/cs6.html | SCR_010279 | Illustrator CC, Adobe Illustrator CS5, Adobe Illustrator CS6 | 2026-02-13 10:56:37 | 12706 | |||||||
|
TASSEL Resource Report Resource Website 1000+ mentions |
TASSEL (RRID:SCR_012837) | TASSEL | software resource, software application | Software package which performs a variety of genetic analyses including association mapping, diversity estimation and calculating linkage disequilibrium. The association analysis between genotypes and phenotypes can be performed by either a general linear model or a mixed linear model. The general linear model now allows users to analyze complex field designs, environmental interactions, and epistatic interactions. The mixed model is specially designed to handle polygenic effects at multiple levels of relatedness including pedigree information. These new analyses should permit association analysis in a wide range plant and animal species. (entry from Genetic Analysis Software) | gene, genetic, genomic, java, web-based, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian is listed by: SoftCite |
nlx_154674, biotools:tassel | http://sourceforge.net/projects/tassel/ https://bio.tools/tassel |
SCR_012837 | and Linkage, Trait Analysis by aSSociation, Evolution | 2026-02-13 10:57:02 | 2335 | |||||||
|
G*Power Resource Report Resource Website 10000+ mentions |
G*Power (RRID:SCR_013726) | data analytics software, software resource, software application | Data analytics software to compute statistical power analyses for many commonly used statistical tests in social and behavioral research. It can also be used to compute effect sizes and to graphically display the results of power analyses. | statistics, t-test, effect of size, power analysis |
is listed by: SoftCite has parent organization: Heinrich Heine University Dusseldorf; North Rhine-Westphalia; Germany |
PMID:17695343 | Free, Public | SCR_013726 | G Star Power, G Power, G*Power - Statistical Power Analyses for Windows and Mac | 2026-02-13 10:57:10 | 14558 | ||||||||
|
EndNote Resource Report Resource Website 10000+ mentions |
EndNote (RRID:SCR_014001) | software resource, software application | A software application which helps users build a bibliography as they write formatted papers, manuscripts and other research-rich documents. Users can search multiple databases and collect PDFs as references for papers, then organize them within EndNote. Bibliographies and citations can be compiled within Microsoft Word using built-in tools. Papers are stored within an EndNote library and can be shared with colleagues. | software application, bibliography, authoring |
is listed by: Connected Researchers is listed by: SoftCite is related to: Connected Researchers |
Available to the research community, Fee (for different packages) | SCR_014001 | 2026-02-13 10:57:12 | 12094 | ||||||||||
|
STATISTICA Resource Report Resource Website 5000+ mentions |
STATISTICA (RRID:SCR_014213) | data analytics software, software resource, software application | Analytics platform with various sub platforms, each with specific performance capabilities for tasks such as data analysis, data management, data visualization, and data mining procedures. | TIBCO, statistical, test, data, mining, |
is listed by: Metabolomics Workbench is listed by: SoftCite |
Commercially available, Free download available | http://statistica.software.informer.com/10.0/ http://statistica.io/products/ |
SCR_014213 | Statistica 10, STATISTICS Product Index, Statistica | 2026-02-13 10:57:15 | 7864 | ||||||||
|
Prime Resource Report Resource Website 500+ mentions |
Prime (RRID:SCR_014887) | software resource, software application | Software package that uses homology modeling and fold recognition to make protein structure predictions. | software package, protein structure, protein strcuture prediction, homology modeling, fold recognition, drug design | is listed by: SoftCite | Commercial | SCR_014887 | 2026-02-13 10:57:26 | 676 | ||||||||||
|
glmnet Resource Report Resource Website 100+ mentions |
glmnet (RRID:SCR_015505) | software resource, software toolkit | Procedures for fitting the entire lasso or elastic-net regularization path for linear regression, logistic and multinomial regression models, Poisson regression and the Cox model. The algorithm uses cyclical coordinate descent in a path-wise fashion. | data regression, cyclical coordinate descent, linear model | is listed by: SoftCite | Free, Available for download | https://www.jstatsoft.org/article/view/v033i01 | SCR_015505 | Lasso and Elastic-Net Regularized Generalized Linear Models | 2026-02-13 10:57:41 | 464 | ||||||||
|
QmRLFS-finder Resource Report Resource Website 10+ mentions |
QmRLFS-finder (RRID:SCR_014584) | data analytics software, software resource, software application | A software which predicts R-loop Forming Sequences (RLFSs) in nucleic acid sequences based on the experimentally supported structural models of RLFSs. The tool identifies and visualizes RLFS coordinates from natural or artificial DNA or RNA input sequences and creates standard-compliant output files for later annotation and analysis. | r-loop, r loop, rlf, rlfs, dna, rna, input sequences, output files, annotation, analysis, bio.tools |
uses: UCSC Genome Browser is listed by: bio.tools is listed by: Debian is listed by: SoftCite |
Singapore Agency for Science Technology and Research | PMID:26400173 PMID:25883153 |
Open Source | biotools:qmrlfs-finder | https://omictools.com/qmrlfs-finder-tool https://bio.tools/qmrlfs-finder |
SCR_014584 | QmRLFS finder | 2026-02-13 10:57:18 | 13 | |||||
|
topGO Resource Report Resource Website 1000+ mentions |
topGO (RRID:SCR_014798) | software resource, software toolkit | Software package which provides tools for testing GO terms while accounting for the topology of the GO graph. Different test statistics and different methods for eliminating local similarities and dependencies between GO terms can be implemented and applied. | r, go, go graph, local similarities, software tool, software package, bio.tools |
is listed by: bio.tools is listed by: Debian is listed by: SoftCite works with: Gene Ontology is hosted by: Bioconductor |
Available for download | biotools:topgo | https://bio.tools/topgo | SCR_014798 | 2026-02-13 10:57:25 | 2839 | ||||||||
|
Hologic Resource Report Resource Website 100+ mentions |
Hologic (RRID:SCR_015529) | material service resource, service resource, production service resource | Commercial organization that provides services and products in global healthcare and diagnostics. | healthcare service, healthcare products, diagnostic services, diagnostic products |
is listed by: SoftCite is related to: Gen-Probe |
SCR_015529 | Hologic Inc | 2026-02-13 10:57:38 | 140 | ||||||||||
|
SAM Resource Report Resource Website 100+ mentions |
SAM (RRID:SCR_010951) | software resource | Software for genomic expression data mining using a statistical technique for finding significant genes in a set of microarray experiments. | genomic expression, data mining, finding significant genes, microarray experiments, |
is listed by: OMICtools is listed by: Debian is listed by: SoftCite is related to: pysam has parent organization: Stanford University; Stanford; California |
Commercial use requires license, Registration required | OMICS_01314, OMICS_00779, SCR_011888 | https://sources.debian.org/src/r-cran-samr/ | SCR_010951 | SAM: Significance Analysis of Microarrays, Significance Analysis of Microarrays | 2026-02-13 10:56:42 | 235 | |||||||
|
Picard Resource Report Resource Website 10000+ mentions Rating or validation data |
Picard (RRID:SCR_006525) | software resource, source code, software toolkit | Java toolset for working with next generation sequencing data in the BAM format. | next generation sequencing, java, bam |
is listed by: OMICtools is listed by: Debian is listed by: SoftCite has parent organization: SourceForge has parent organization: Broad Institute is required by: SL-quant |
Available for download, Free | OMICS_01066 | http://sourceforge.net/projects/picard/ https://github.com/broadinstitute/picard https://sources.debian.org/src/picard-tools/ |
SCR_006525 | 2026-02-13 10:55:52 | 14139 | ||||||||
|
Stata Resource Report Resource Website 10000+ mentions |
Stata (RRID:SCR_012763) | software resource, software application | Software package for statistical analysis and presentation of graphics. Statistical software for data science. | statistical analysis, presentation of graphics, data science, | is listed by: SoftCite | Restricted | nlx_156918 | SCR_012763 | 2026-02-13 10:57:01 | 48997 | |||||||||
|
Design-Expert Resource Report Resource Website 10+ mentions |
Design-Expert (RRID:SCR_022671) | data analytics software, software resource, software application | Statistical software package from Stat-Ease Inc. to perform design of experiments. Offers comparative tests, screening, characterization, optimization, robust parameter design, mixture designs and combined designs. | Stat-Ease Inc., experiments design, comparative tests, screening, characterization, optimization, parameter design, mixture designs, combined designs | is listed by: SoftCite | Restricted | SCR_022671 | 2026-02-13 10:58:55 | 41 | ||||||||||
|
Treerecs Resource Report Resource Website 1+ mentions |
Treerecs (RRID:SCR_024497) | software resource, software application | Open source, species and gene tree reconciliation software. Software integrated phylogenetic tool, from sequences to reconciliations. Used to correct, rearrange and reroot gene trees with regard to given species tree. | species and gene tree reconciliation, integrated phylogenetic, from sequences to reconciliations, correct gene trees, rearrange gene trees, reroot gene trees, | is listed by: SoftCite | PMID:33085745 | Free, Available for download, Freely available | https://project.inria.fr/treerecs/ | SCR_024497 | 2026-02-13 10:59:14 | 1 |
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