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http://www.uni-bonn.de/~umt70e/soft.htm
THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 5th,2023. Software application for calculation of the restricted likelihood-ratio affected sib-pair test for linkage allowing for imprinting (entry from Genetic Analysis Software)
Proper citation: ILR (RRID:SCR_007895) Copy
http://csg.sph.umich.edu/boehnke/sibmed.php
Software application that identifies likely genotyping errors and mutations for a sib pair in the context of multipoint mapping. (entry from Genetic Analysis Software)
Proper citation: SIBMED (RRID:SCR_007495) Copy
http://www.mapmanager.org/mmQT.html
A graphic, interactive program to map quantitative trait loci by regression methods; MAP MANAGER CLASSIC enhanced by quantitative trait mapping. (entry from Genetic Analysis Software)
Proper citation: MAP MANAGER QT (RRID:SCR_008101) Copy
THIS RESOURCE IS NO LONGER IN SERVICE. Documented September 15, 2017. Software application (entry from Genetic Analysis Software)
Proper citation: S (RRID:SCR_007646) Copy
http://www.chgb.org.cn/lda/lda.htm
THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. A Java program for analyzing the pairwise linkage disequilibrium.
Proper citation: LDA (RRID:SCR_007527) Copy
http://genome.sph.umich.edu/wiki/RvTests
Software application (entry from Genetic Analysis Software)
Proper citation: RVTESTS (RRID:SCR_007639) Copy
http://watson.hgen.pitt.edu/register/soft_doc.html,
THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. Software application that assigns each person the haplotype with the highest conditional probability using Elston-Stewart algorithm (entry from Genetic Analysis Software)
Proper citation: HAPLO 1 (RRID:SCR_009058) Copy
http://www.genetics.emory.edu/labs/epstein/software/scout/index.html
Software program for conducting combined association analysis of triads and unrelated subjects (entry from Genetic Analysis Software)
Proper citation: SCOUT (RRID:SCR_009054) Copy
http://www.cs.helsinki.fi/group/genetics/haplotyping.html
Software application for population-based haplotyping (entry from Genetic Analysis Software)
Proper citation: HAPLOREC (RRID:SCR_009055) Copy
https://github.com/gaow/genetic-analysis-software/blob/master/pages/SEGPATH.md
THIS RESOURCE IS NO LONGER IN SERVICE, documented September 29, 2016. Software for segregation and pathway analysis.
Proper citation: SEGPATH (RRID:SCR_009052) Copy
http://www.mds.qmw.ac.uk/statgen/dcurtis/software.html
THIS RESOURCE IS NO LONGER IN SERVICE. Documetned on May 12,2023. Software application (entry from Genetic Analysis Software)
Proper citation: FASTMAP (2) (RRID:SCR_008635) Copy
https://github.com/gaow/genetic-analysis-software/blob/master/pages/KIN.md
THIS RESOURCE IS NO LONGER IN SERVICE, documented September 29, 2016. Software application to calculate kinship coefficient or coefficient of coancestry (the probability that alleles at a given locus are identical by descent).
Proper citation: KIN (RRID:SCR_009047) Copy
http://chgr.mc.vanderbilt.edu/genomeSIMLA/
Software application that is a forward-time population simulation method that can simulate realistic patterns of LD in both family-based and case-control datasets. (entry from Genetic Analysis Software)
Proper citation: GENOMESIMLA (RRID:SCR_008990) Copy
Software application that is a graphic way of organizing the mass of information gathered during a family assessment and finding patterns in the family system (entry from Genetic Analysis Software)
Proper citation: GENOGRAM-MAKER (RRID:SCR_008751) Copy
Software application to reduce family members so the families can be used in GENEHUNTER program. FASTER eliminates the most redundant individuals according to the set of weights (preferences) (Age, Information about genetic Markers, etc.) The program has several features such as automatical reducement of branches without any affected individuals, etc. (entry from Genetic Analysis Software)
Proper citation: FASTER (RRID:SCR_009045) Copy
Software application that integrates a broad spectrum of data mining, statistical analysis, interactive visualization and modeling tools that allow QTL analysis based on advanced and sophisticated methods for maximum extraction of the mapping information from data. (entry from Genetic Analysis Software)
Proper citation: MULTIQTL (RRID:SCR_009043) Copy
http://galton.uchicago.edu/~mcpeek/software/spermseg
Software application for analysis of segregation in single-sperm data (entry from Genetic Analysis Software)
Proper citation: SPERMSEG (RRID:SCR_009044) Copy
http://cedar.genetics.soton.ac.uk/pub/PROGRAMS/ALLASS
Software application (entry from Genetic Analysis Software)
Proper citation: ALLASS (RRID:SCR_009040) Copy
http://cooke.gsf.de/wjst/download.cfm
Software application that allows pedigree entry and retrieval from an internet browser into a distant MS ACCESS database. Includes IP access restriction, automatic numbering of families and individuals and database consistency checks. (entry from Genetic Analysis Software)
Proper citation: PEDJAVA (RRID:SCR_008429) Copy
http://www.nhgri.nih.gov/DIR/IDRB/GASP/
Software tool for testing and investigating methods in statistical genetics by generating samples of family data based on user specified models. (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.
Proper citation: GASP (RRID:SCR_008703) Copy
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