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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
GraBCas Resource Report Resource Website |
GraBCas (RRID:SCR_000205) | GraBCas | software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. A software tool for predicting granzyme B and caspase cleavage sites. | matlab, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian |
PMID:15980455 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_01674, biotools:grabcas | https://bio.tools/grabcas | SCR_000205 | 2026-02-07 02:05:20 | 0 | ||||||
|
GPS-Calpain Cleavage Detector Resource Report Resource Website 1+ mentions |
GPS-Calpain Cleavage Detector (RRID:SCR_000202) | GPS-CCD | software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. A software package for the prediction of calpain cleavage sites. | calpain, cleavage detector, prediction | is listed by: OMICtools | PMID:21533053 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_01673 | SCR_000202 | Calpain Cleavage Detector | 2026-02-07 02:05:18 | 4 | ||||||
|
Queensland Cyber Infrastructure Foundation Ltd Resource Report Resource Website |
Queensland Cyber Infrastructure Foundation Ltd (RRID:SCR_000208) | QCIF | nonprofit organization | Provides digital infrastructure capabilities for research and innovation across Queensland and Australia. Provides services, infrastructure and support for computation and data driven collaborative research and its application in industry. Members are six Queensland universities – The University of Queensland, Queensland University of Technology, Griffith University, James Cook University, CQUniversity, and the University of Southern Queensland. The University of the Sunshine Coast is an associate member. Member employees provide support and development services. | bioinformatics, contract, software, infrastructure, proteomics, metabolomics, clinical, dataset, analysis |
is listed by: ScienceExchange has parent organization: University of Queensland; Brisbane; Australia is parent organization of: QFAB Bioinformatics |
Queensland Government Department of Employment Economic Development and Innovation ; Commonwealth Government of Australia ; funded through its members |
Available to the research community in Australia | SciEx_4541 | http://www.scienceexchange.com/facilities/4541 | SCR_000208 | Queensland Parallel Supercomputing Foundation, qcif, the Queensland Cyber Infrastructure Foundation | 2026-02-07 02:05:17 | 0 | |||||
|
Multiple Myeloma Research Foundation Resource Report Resource Website 1+ mentions |
Multiple Myeloma Research Foundation (RRID:SCR_000207) | MMRF | institution | Research foundation that funds research to develop new treatments for multiple myeloma, an incurable blood cancer. | drug, treatment, cancer | is parent organization of: MMRF CoMMpass Study | Multiple myeloma | ISNI: 0000 0000 9350 5788, Crossref funder ID: 100001253, nlx_157895, Wikidata: Q6934894, grid.429426.f | https://ror.org/03ww1bx13 | SCR_000207 | 2026-02-07 02:05:18 | 9 | |||||||
|
Ohio Northern University; Ohio; USA Resource Report Resource Website |
Ohio Northern University; Ohio; USA (RRID:SCR_000362) | ONU | university | A public university in Ohio with land, sea and space grants that offers degree programs and research at the undergraduate and graduate level. | land, sea, space, grant, ohio, public | is parent organization of: Ohio Northern University College of Pharmacy | Wikidata:Q1683585, grid.261323.7, nlx_143792, ISNI:0000 0001 2187 1348 | https://ror.org/052963a64 | SCR_000362 | 2026-02-07 02:05:21 | 0 | ||||||||
|
riboPicker Resource Report Resource Website 1+ mentions |
riboPicker (RRID:SCR_000360) | software resource | Software to automatically identify and efficiently remove rRNA-like sequences from metatranscriptomic and metagenomic datasets. | standalone software, perl, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian has parent organization: SourceForge |
PMID:22155869 | Free, Available for download, Freely available | OMICS_02618, biotools:ribopicker | https://bio.tools/ribopicker | SCR_000360 | 2026-02-07 02:05:21 | 2 | |||||||
|
ARACHNE Resource Report Resource Website 1+ mentions |
ARACHNE (RRID:SCR_000351) | ARACHNE | software resource | A software for genome assembly, and is specifically designed to analyze long Sanger-chemistry reads. | genome, sequencing, analysis, sanger, chemistry, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian has parent organization: Broad Institute |
PMID:11779843 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_01812, biotools:arachne | https://bio.tools/arachne | SCR_000351 | ARACHNE: a whole-genome shotgun assembler, ARACHNE (Unsupported) | 2026-02-07 02:05:19 | 3 | |||||
|
ParseCNV Resource Report Resource Website 1+ mentions |
ParseCNV (RRID:SCR_000355) | software resource | Software that takes CNV calls as input and creates SNP based statistics for CNV occurrence in cases and controls then calls CNVRs based on neighboring SNPs of similar significance. | standalone software |
is listed by: OMICtools has parent organization: SourceForge |
PMID:23293001 | Free, Available for download, Freely available | OMICS_02566 | SCR_000355 | 2026-02-07 02:05:19 | 1 | ||||||||
|
Kinannote Resource Report Resource Website 1+ mentions |
Kinannote (RRID:SCR_000352) | software resource | Software that identifies and classifies protein kinases in a user-provided fasta file using an HMM derived from serine / threonine protein kinases, a position specific scoring matrix derived from the HMM, and comparison with a local version of the curated kinase database from kinase.com. | standalone software, perl |
is listed by: OMICtools has parent organization: SourceForge |
PMID:23904509 | Free, Available for download, Freely available | OMICS_05965 | SCR_000352 | 2026-02-07 02:05:21 | 2 | ||||||||
|
HudsonAlpha Genomics Services Lab Resource Report Resource Website |
HudsonAlpha Genomics Services Lab (RRID:SCR_000353) | HudsonAlpha Genomics Services Lab | service resource | A lab that offers genetic research tools such as RNA sequencing and a variety of arrays. | genome, sequencing, assembly, rna, microarray, exome | is listed by: ScienceExchange | THIS RESOURCE IS NO LONGER IN SERVICE | SciEx_221 | SCR_000353 | HudsonAlpha Institute for Biotechnology Genomics Services Lab, Genomics Services Lab | 2026-02-07 02:05:21 | 0 | |||||||
|
Jnomics Resource Report Resource Website |
Jnomics (RRID:SCR_000348) | software resource | A collection of cloud-scale DNA sequence analysis tools. | mapreduce |
is listed by: OMICtools has parent organization: SourceForge |
Free, Available for download, Freely available | OMICS_04074 | SCR_000348 | 2026-02-07 02:05:19 | 0 | |||||||||
|
ABrowse Resource Report Resource Website 1+ mentions |
ABrowse (RRID:SCR_000345) | software resource | A genome browser framework which gives an open browsing experience, open data access, collaborative work support, and a framework to import annotations. Multiple data access approaches are supported for external platforms to retrieve data from ABrowse. This resource also contains an online user-space in which users can create, store and share comments, annotations and landmarks. | genome browser, collaborative work, open data access, collaborative work support, framework, import annotation |
is listed by: OMICtools is related to: Galaxy |
PMID:22222089 | Free, Available for download, Freely available | OMICS_00899 | SCR_000345 | 2026-02-07 02:05:19 | 4 | ||||||||
|
GPViz Resource Report Resource Website |
GPViz (RRID:SCR_000346) | GPViz | software resource | A versatile Java-based software used for dynamic gene-centered visualization of genomic regions and/or variants. | gene, visualization, genomic, variant, bioinformatics, java | is listed by: OMICtools | Free, Available for download, Freely available | OMICS_00915 | SCR_000346 | 2026-02-07 02:05:21 | 0 | ||||||||
|
SunnyLab Resource Report Resource Website |
SunnyLab (RRID:SCR_000382) | commercial organization | An antibody supplier that provides a range of human antigens, serum and plasma, and cell culture reagents. | antibody, antigen, reagent, serum, plasma, culture, commercial | Commercially available | nlx_152472 | SCR_000382 | 2026-02-07 02:05:22 | 0 | ||||||||||
|
iASeq Resource Report Resource Website |
iASeq (RRID:SCR_000420) | software resource | Software that uses a Bayesian hierarchical mixture model to learn correlation patterns of allele-specificity among multiple proteins. | software package, unix/linux, mac os x, windows, r, chip-seq, rna-seq, snp |
is listed by: OMICtools has parent organization: Bioconductor |
PMID:23194258 | Free, Available for download, Freely available | OMICS_05505 | SCR_000420 | iASeq: integrating multiple sequencing datasets for detecting allele-specific events | 2026-02-07 02:05:22 | 0 | |||||||
|
University of Massachusetts; Massachusetts; USA Resource Report Resource Website 1+ mentions |
University of Massachusetts; Massachusetts; USA (RRID:SCR_000379) | UMass | university | A five-campus public university system in Massachusetts. The system includes four universities, a medical school, and a satellite campus. | public, university, system, boston, massachusetts, medicine |
is related to: Beta Cell Biology Consortium is parent organization of: University of Massachusetts Amherst; Massachusetts; USA is parent organization of: University of Massachusetts Lowell; Massachusetts; USA is parent organization of: University of Massachusetts Medical School; Massachusetts; USA is parent organization of: University of Massachusetts Chan Medical School Metabolomics Core Facility is parent organization of: University of Massachusetts Flow Cytometry Core Facility |
GRID grid.266684.8, ISNI 0000 0001 2184 9220, nlx_18192, Wikidata Q1061122 | https://ror.org/0260j1g46 | SCR_000379 | University of Massachusetts System, UMass, University of Massachusetts | 2026-02-07 02:05:21 | 2 | |||||||
|
Tianjin University; Tianjin; China Resource Report Resource Website |
Tianjin University; Tianjin; China (RRID:SCR_000372) | TJU | university | A national university in China with degree programs that include engineering, economics, humanities, law and art at the undergraduate, graduate and doctoral level. | china, national university, engineering, economics, law, humanities, doctoral, undergraduate, graduate |
is parent organization of: DEG - Database of Essential Genes is parent organization of: Greglist is parent organization of: QTLbase |
grid.33763.32, Crossref funder ID:501100004517, Wikidata:Q2031560, nlx_28979, ISNI:0000 0004 1761 2484 | https://ror.org/012tb2g32 | http://www.tju.edu.cn/english/ | SCR_000372 | TJU | 2026-02-07 02:05:19 | 0 | ||||||
|
Tuskegee University; Alabama; USA Resource Report Resource Website |
Tuskegee University; Alabama; USA (RRID:SCR_000373) | university | A private, historically black university that offers degree programs at the undergraduate, graduate, doctoral and professional levels. The university has programs that include veterinarian studies, allied health, nursing, education | tuskegee, alabama, private, historically black, doctoral, professional, veterinarian |
is parent organization of: Tuskegee Center for Biomedical Research - Digital Imaging is parent organization of: Tuskegee Center for Biomedical Research Shared Instrumentation Core is parent organization of: Tuskegee University Computational Biology and Bioinformatics - Biomedical Information Management Services |
nlx_156108, ISNI:0000 0001 0707 9354, Wikidata:Q1682329, grid.265253.5 | https://ror.org/0137n4m74 | SCR_000373 | Tuskegee University | 2026-02-07 02:05:21 | 0 | ||||||||
|
London School of Economics and Political Science; London; United Kingdom Resource Report Resource Website |
London School of Economics and Political Science; London; United Kingdom (RRID:SCR_000370) | LSE | university | A public research university in London with an emphasis in social science degree programs such as law, mathematics, public affairs and international history. The university offers degrees at the undergraduate, graduate and doctoral level. | social science, humanities, economics, undergraduate, graduate, postdoctoral, research | nlx_158056 | SCR_000370 | London School of Economics and Political Science, London School of Economics | 2026-02-07 02:05:21 | 0 | |||||||||
|
Tel Aviv University; Ramat Aviv; Israel Resource Report Resource Website |
Tel Aviv University; Ramat Aviv; Israel (RRID:SCR_000371) | university | A public university in Israel with degree programs in areas such as arts, engineering, humanities, the law and medicine at the undergraduate and graduate level. The university has affiliated but independent schools that focus on specific areas such as music, environmental studies, dentistry, social work, education and neuroscience. | israel, public, engineering, law, humanities, dentistry, social work, education, neuroscience, environment, music, medicine |
is related to: AgedBrainSYSBIO is parent organization of: MODENT - A Tool For Reconstructing Gene Regulatory Networks is parent organization of: ConSurf Database is parent organization of: HYDEN is parent organization of: TranspoGene is parent organization of: FlexProt: flexible protein alignment is parent organization of: Network-based Prediction of Human Tissue-specific Metabolism is parent organization of: ConSurf Database is parent organization of: RsiteDB- RNA binding sites database is parent organization of: Cross-Sectional and Longitudinal Aging Study is parent organization of: SPIKE |
nlx_45243 | SCR_000371 | TAU | 2026-02-07 02:05:21 | 0 |
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