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http://purl.bioontology.org/ontology/MEO

Ontology for organismal habitats (especially focused on microbes)

Proper citation: Metagenome and Microbes Environmental Ontology (RRID:SCR_010359) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/MIXSCV

Controlled vocabularies for the MIxS (Minimal Information about any Sequence) family of metadata checklists. See http://gensc.org/gc_wiki/index.php/MIxS for details on the MIxS checklists.

Proper citation: Minimal Information about any Sequence Controlled Vocabularies (RRID:SCR_010363) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/VHOG

A multi-species anatomical ontology for the vertebrate lineage, developed as part of the Bgee project. The mapping to species-specific anatomical ontologies is provided as a separated file: http://bgee.unil.ch/download/organ_association_vHOG.txt This mapping represents homology-strict relationships, in the sense of HOM:0000007 historical homology. Each mapping has been manually reviewed, and theye provide confidence codes and references when available.

Proper citation: Vertebrate Homologous Organ Group Ontology (RRID:SCR_010444) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/VANDF, NDF

Ontology that includes information on clinical drugs, drug classes, ingredients and National Drug Code (NDC) Directory codes.

Proper citation: Veterans Health Administration National Drug File (RRID:SCR_010445) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/VSO

An extension of the Ontology for General Medical Science (OGMS) that covers the four consensus human vital signs: blood pressure, body temperature, respiration rate, pulse rate. VSO provides also a controlled structured vocabulary for describing vital signs measurement data, the various processes of measuring vital signs, and the various devices and anatomical entities participating in such measurements.

Proper citation: Vital Sign Ontology (RRID:SCR_010446) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/WHO-ART

Ontology of the WHO adverse reaction terminology, 1997.

Proper citation: WHO Adverse Reaction Terminology (RRID:SCR_010447) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/SuicidO

Ontology of suicidology.

Proper citation: suicideo (RRID:SCR_010451) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/pseudo

Ontology for pseudogenes including biological feature, classified type, Evidence code, and subcellular origin.

Proper citation: Pseudogene (RRID:SCR_010453) Copy   

•   Source: SciCrunch Registry

https://bioportal.bioontology.org/ontologies/TEDDY?p=classes&conceptid=http%3A%2F%2Fidentifiers.org%2Fteddy%2FTEDDY_0000000

Ontology for dynamical behaviors, observable dynamical phenomena, and control elements of bio-models and biological systems in Systems Biology and Synthetic Biology.

Proper citation: Terminology for the Description of Dynamics (RRID:SCR_010454) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/STATO

A general-purpose STATistics Ontology to provide coverage for processes such as statistical tests, their conditions of applications, and information needed or resulting from statistical methods, such as probability distributions, variable, spread and variation metrics. STATO also covers aspects of experimental design and description of plots and graphical representations commonly used to provide visual cues of data distribution or layout and to assist review of the results.

Proper citation: STATistics Ontology (RRID:SCR_010421) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/SYN

Controlled vocabulary used for various entity properties in the Synapse platform.

Proper citation: Sage Bionetworks Synapse Ontology (RRID:SCR_010422) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/SEP

A structured controlled vocabulary for the annotation of sample processing and separation techniques in scientific experiments, such as, and including, gel electrophoresis, column chromatography, capillary electrophoresis, centrifugation and so on. Developed jointly by the HUPO Proteomics Standards Initiative and The Metabolomics Standards Initiative.

Proper citation: Sample Processing and Separation Techniques Ontology (RRID:SCR_010423) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/TAXRANK

A vocabulary of taxonomic ranks intended to replace the sets of rank terms found in the Teleost Taxonomy Ontology, the OBO translation of the NCBI taxonomy and similar OBO taxonomy ontologies. It provides terms for taxonomic ranks drawn from both the NCBI taxonomy database and from a rank vocabulary developed for the TDWG biodiversity information standards group. Cross references to appearances of each term in each source are provided. Consistent with its intended use as a vocabulary of labels, there is no relation specifying an ordering of the rank terms.

Proper citation: Taxonomic Rank Vocabulary (RRID:SCR_010430) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/OGR

Ontology that is used with other ontologies to represent the genetic susceptibility factors of diabetes. This OWL ontology classified the geograhical regions related vocabularies extracted from UMLS.

Proper citation: Ontology of Geographical Region (RRID:SCR_010398) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/TRAK

Ontology that formally models information relevant for the rehabilitation of knee conditions. It provides the framework that can be used to collect coded data in sufficient detail to support epidemiologic studies so that the most effective treatment components can be identified, new interventions developed and the quality of future randomized control trials improved to incorporate a control intervention that is well defined and reflects clinical practice.

Proper citation: Taxonomy for Rehabilitation of Knee Conditions (RRID:SCR_010431) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/TM-OTHER-FACTORS

Ontology of the value set for the Other Factors property of the International Classification of Traditional Medicine (ICTM).

Proper citation: Traditional Medicine Other Factors Value Set (RRID:SCR_010437) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/TRON

Ontology about the anatomical structures of the red flour beetle Tribolium castaneum in the developmental stages larva, pupa and adult.

Proper citation: Tribolium Ontology (RRID:SCR_010440) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/PAE

THIS RESOURCES IS NO LONGER IN SERVICE, documented on April 23, 2014. REPLACED BY: Plant Ontology (PO). A controlled vocabulary of plant morphological and anatomical structures representing organs, tissues, cell types, and their biological relationships based on spatial and developmental organization. Note that this has been subsumed into the PO. This file is created by filtering plant_ontology_assert.obo to contain only terms from the plant anatomical entity branch of the PO. For more information, please see: http://palea.cgrb.oregonstate.edu/viewsvn/Poc/tags/live/

Proper citation: Plant Anatomy (RRID:SCR_010408) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/RADLEX

A controlled terminology for radiology-a single unified source of radiology terms for radiology practice, education, and research. For license information see : http://www.rsna.org/uploadedFiles/RSNA/Content/Informatics/radlex_public_license_version_1-0-1.pdf Converted to use OWL format submissions

Proper citation: Radiology Lexicon (RRID:SCR_010418) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/RH-MESH

Ontology of a modified version of Medical Subjects Headings Thesaurus 2014, that is an OWL representation of MeSH so that it can be integrated with other ontologies represented in OWL. It contains all terms that are in MeSH and in the MeSH concept tree, including the pharmacological actions (represented as subclass relations). Concepts in the MeSH concept tree are merged with MeSH term ids. Note that, while this ontology is composed of MeSH terms, it does not correspond directly to UMLS MeSH. In particular, a single term in UMLS MeSH often results in multiple classes in this ontology. For example, in MeSH there is a single term with the label Heart. The internal code (unique identifier) for this term is A07.541. In this ontology there are two entirely different terms, both of which have the label Heart. The codes for these terms are A07.541 and D006321.

Proper citation: Robert Hoehndorf Version of MeSH (RRID:SCR_010419) Copy   

•   Source: SciCrunch Registry