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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Chernobyl Tissue Bank Resource Report Resource Website 1+ mentions |
Chernobyl Tissue Bank (RRID:SCR_010662) | CTB | material resource, biomaterial supply resource | The CTB (Chernobyl Tissue Bank) is an international cooperation that collects, stores and disseminates biological samples from tumors and normal tissues from patients for whom the aetiology of their disease is known - exposure to radioiodine in childhood following the accident at the Chernobyl power plant. The main objective of this project is to provide a research resource for both ongoing and future studies of the health consequences of the Chernobyl accident. It seeks to maximize the amount of information obtained from small pieces of tumor by providing multiple aliquots of RNA and DNA extracted from well documented pathological specimens to a number of researchers world-wide and to conserve this valuable material for future generations of scientists. It exists to promote collaborative, rather than competitive, research on a limited biological resource. Tissue is collected to an approved standard operating procedure (SOP) and is snap frozen; the presence or absence of tumor is verified by frozen section. A representative paraffin block is also obtained for each case. Where appropriate, we also collect fresh and paraffin-embedded tissue from loco-regional metastases. Currently we do not issue tissue but provide extracted nucleic acid, paraffin sections and sections from tissue microarrays from this material. The project is coordinated from Imperial College, London and works with Institutes in the Russian Federation (the Medical Radiological Research Centre in Obninsk) and Ukraine (the Institute of Endocrinology and Metabolism in Kiev) to support local scientists and clinicians to manage and run a tissue bank for those patients who have developed thyroid tumors following exposure to radiation from the Chernobyl accident. Belarus was also initially included in the project, but is currently suspended for political reasons. |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Imperial College London; London; United Kingdom |
Tumor, Normal, Exposure to radioiodine in childhood following the accident at the Chernobyl power plant | European Union ; Sasakawa Memorial Health Foundation ; NCI |
nlx_70828 | SCR_010662 | 2026-02-15 09:20:19 | 9 | ||||||||
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CIBERSORT Resource Report Resource Website 1000+ mentions |
CIBERSORT (RRID:SCR_016955) | software application, data analytics software, software resource | Software tool to provide an estimation of the abundances of member cell types in a mixed cell population, using gene expression data. Used for characterizing cell composition of complex tissues from their gene expression profiles, large scale analysis of RNA mixtures for cellular biomarkers and therapeutic targets. | estimation, abundance, cell, type, mixed, population, gene, expression, data, tissue, complex, analysis, RNA, biomarker, therapeutic, target, bio.tools |
is listed by: Debian is listed by: bio.tools has parent organization: Stanford University; Stanford; California |
Doris Duke Charitable Foundation ; Damon Runyon Cancer Research Foundation ; B&J Cardan Oncology Research Fund ; Ludwig Institute for Cancer Research ; NCI U01 CA154969; NIAID U19 AI090019; NCI T32 CA09302; US Department of Defense ; Siebel Stem Cell Institute ; Thomas and Stacey Siebel Foundation |
PMID:25822800 | Not freely available for download or distribution, Available for non commercial users, Registration required | biotools:CIbERSORt | https://bio.tools/CIBERSORT | SCR_016955 | 2026-02-15 09:21:12 | 1239 | ||||||
|
SAINTexpress Resource Report Resource Website 10+ mentions |
SAINTexpress (RRID:SCR_018562) | software toolkit, software resource | Software tool for upgraded implementation of probabilistic scoring of affinity purification mass spectrometry data. Used for filtering high confidence interaction data from affinity purification mass spectrometry experiments. Used for assigning confidence scores to protein-protein interactions based on quantitative proteomics data in AP-MS experiments. | Probabilistic scoring, affinity purification, mass spectrometry data, mass spectrometry experiment data, assigning confidence score, protein-protein interaction, quantitative proteomic data | NCRR R01 RR024031; NIGMS R01 GM094231; NCI R01 CA126239 |
PMID:24513533 | Free, Freely available | SCR_018562 | Significance Analysis of INTeractome Express | 2026-02-15 09:22:16 | 13 | ||||||||
|
CellRank Resource Report Resource Website 50+ mentions |
CellRank (RRID:SCR_022827) | software toolkit, software resource | Software package for directed single cell fate mapping in diverse scenarios, including regeneration, reprogramming and disease. Automatically detects initial, intermediate and terminal populations, predicts fate potentials and visualizes continuous gene expression trends along individual lineages. Applied to lineage traced cellular reprogramming data, predicted fate probabilities correctly recover reprogramming outcomes. | directed single cell fate mapping, detects initial, intermediate and terminal populations, gene expression trends, traced cellular reprogramming data | NCI P30 CA08748; BMBF ; Helmholtz Association Initiative ; Joachim Herz Stiftung ; Bayer Foundation |
PMID:35027767 | Free, Available for download, Freely available | SCR_022827 | 2026-02-15 09:22:58 | 94 | |||||||||
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MCMICRO Resource Report Resource Website 1+ mentions |
MCMICRO (RRID:SCR_022832) | software toolkit, software resource | Software tool as scalable, modular image processing pipeline for multiplexed tissue imaging. Transforms multi channel whole slide images into single cell data. | multiplexed tissue imaging, image processing pipeline, transform multi channel whole slide images into single cell data | NCI U54 CA225088; NCI U2C CA233262; Ludwig Cancer Center at Harvard ; Swiss National Science Foundation ; Damon Runyon Cancer Research Foundation ; NCI R50 CA252138; NCI P30 CA06516; NCI 1U01 CA224012; NCI U2C CA233280; NCI R01 CA223150; NCI R01 CA226909; NICHD R21 HD099367 |
PMID:34824477 | Free, Available for download, Freely available | https://github.com/labsyspharm/mcmicro | SCR_022832 | Multiple Choice MICROscopy, mcmicro.org | 2026-02-15 09:22:53 | 4 | |||||||
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Marker Enrichment Modeling Resource Report Resource Website 1+ mentions |
Marker Enrichment Modeling (RRID:SCR_022495) | MEM | software application, data analytics software, software resource | Software tool to calculate enrichment scores. Generates human and machine readable labels that quantify features enriched in sample. Used to identify multiple populations of cells and to compare each population to all of other remaining cells from original sample. | Calculate enrichment scores, identify multiple cells populations, compare each population | NCI R25 CA136440; NCI F31 CA199993; NCI R00 CA143231; Vanderbilt Ingram Cancer Center |
DOI:10.1038/nmeth.4149 | Free, Available for download, Freely available | SCR_022495 | 2026-02-15 09:22:55 | 3 | ||||||||
|
Texas University Health Science Center at San Antonio Long School of Medicine Department of Cell Systems and Anatomy Optical Imaging Core Facility Resource Report Resource Website 1+ mentions |
Texas University Health Science Center at San Antonio Long School of Medicine Department of Cell Systems and Anatomy Optical Imaging Core Facility (RRID:SCR_012171) | UTHSCSA OIF | access service resource, core facility, service resource | Service resource which makes imaging technology available to investigators on UTHSCSA campus and neighboring scientific community. Core Optical Imaging Facility offers access to technology for imaging of living cells, tissues, and animals, consultation, education and assistance regarding theory and application of optical imaging techniques, technical advice on specimen preparation techniques and probe selection. | Optical, imaging, facility, living, cell, tissue, animal, consultation, speciment, preparation |
is listed by: ScienceExchange has parent organization: University of Texas Health Science Center at San Antonio; Texas; USA |
NCI ; UTHSCSA ; NIA P01 AG19316 |
Restricted | SciEx_10134 | http://www.scienceexchange.com/facilities/optical-imaging-facility-oif | SCR_012171 | University of Texas Health Science Center at San Antonio Optical Imaging Facility, University of Texas Health Science Center at San Antonio Optical Imaging Facility (OIF), UTHSCSA Optical Imaging Facility, UTHSCSA Optical Imaging Facility (OIF) | 2026-02-15 09:20:09 | 1 | |||||
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University of Pennsylvania Genomics Analysis Core Resource Report Resource Website |
University of Pennsylvania Genomics Analysis Core (RRID:SCR_011061) | UPenn DNA Sequencing Facility, Penn DNA Sequencing Facility | access service resource, core facility, service resource | Core facility that provides the following services: Large sequencing project support, Sanger sequencing service, High throughput DNA sequencing, Ion Torrent Personal Genome Machine sequencing, Template preparation and purification, Roche 454 sequencing, Sequence analysis and database search support, Construction of targeting vector for gene targeting, Genotyping and Fragment Analysis service, Molecular biology services, Mouse genotyping, and Ion Personal Genome Machine sequencing data analysis. The DNA Sequencing Facility provides long read, automated Sanger sequencing; microsatellite-based genotyping and fragment analysis; plasmid and BAC DNA preparation and purification; and related molecular biological services including PCR, cloning, sub-cloning, site-directed mutagenesis, and preparation of targeting vectors for gene targeting in mice. Core also provides services and support for analysis and interpretation of sequence data as well as the design of approaches to complex sequencing projects. For the last four years the facility has been providing Roche 454 sequencing service that includes library preparation, emulsion PCR and pyrosequencing for both genomic DNA and amplicons. | dna sequencing, chain termination sequencing, next generation sequencing, plasmid purification, dna purification, metagenomics analysis, pyrosequencing, rna sequencing, bioinformatics analysis, knockout mouse generation, construct engineering, microsatellite analysis, single-nucleotide polymorphism analysis, genotyping assay, site-directed mutagenesis, polymerase chain reaction, recombinant plasmid cloning, transgenic mouse model generation |
is listed by: ScienceExchange is listed by: Eagle I has parent organization: University of Pennsylvania Perelman School of Medicine; Pennsylvania; USA |
NCI P30 CA016520 | Available to external user | SciEx_9913 | SCR_011061 | , University of Pennsylvania, Perelman School of Medicine, Penn, DNA Sequencing Facility, UPenn | 2026-02-15 09:20:05 | 0 | ||||||
|
Moffitt Cancer Center Tissue Core Facility Resource Report Resource Website 1+ mentions |
Moffitt Cancer Center Tissue Core Facility (RRID:SCR_012364) | Moffitt Tissue Core | access service resource, core facility, service resource | Biorepository resource with mission of proper collection, handling, processing and storage of irreplaceable biological specimens to support spectrum of related basic science, translational and clinical research. Provides expertise in nucleic acid extractions, quantification, aliquoting and quality assurance; liquid specimen centrifugation, processing and aliquoting; histological tissue processing, immunohistochemistry and tissue microarray microtomy; pathologist consultation services. Tissue Core operations are divided into four distinct pillars of service that work collaboratively to ensure specimen quality is maintained from procurement to preservation. |
is listed by: ScienceExchange is listed by: ABRF CoreMarketplace has parent organization: Moffitt Cancer Center |
NCI P30 CA076292 | ABRF_2739, SciEx_12211 | https://coremarketplace.org/?FacilityID=2739&citation=1 | http://www.scienceexchange.com/facilities/tissue-core-facility-moffitt | SCR_012364 | , H. Lee Moffitt Cancer Center and Research Institute Tissue Core Facility | 2026-02-15 09:20:31 | 2 | ||||||
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Memorial Sloan Kettering Cancer Center Antibody and Bioresource Core Facility Resource Report Resource Website 1+ mentions |
Memorial Sloan Kettering Cancer Center Antibody and Bioresource Core Facility (RRID:SCR_017691) | ABCF | access service resource, core facility, service resource | ABCF can provide MAbs from established hybridomas for RESEARCH PURPOSES ONLY, can assist in generating MAbs, offers a weekly mycoplasmal contamination screening service for tissue culture samples, distributes cell lines developed at Memorial Sloan Kettering Cancer Center and Rockefeller University. | Monoclonal, antibody, hybridoma, mycoplasma, screening, service, tissue, culture, sample, cell, line, core |
is listed by: ABRF CoreMarketplace has parent organization: Memorial Sloan Kettering Cancer Center |
NCI P30 CA008748 | Restricted | SCR_017709, ABRF_51 | https://ilab.mskcc.org/service_center/show_external/3451 https://coremarketplace.org/?FacilityID=85 |
SCR_017691 | Antibody and Bioresource Core Facility | 2026-02-15 09:22:06 | 1 | |||||
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Stanford University Vincent Coates Foundation Mass Spectrometry Laboratory Core Facility Resource Report Resource Website 100+ mentions |
Stanford University Vincent Coates Foundation Mass Spectrometry Laboratory Core Facility (RRID:SCR_017801) | access service resource, core facility, service resource | Core mass spec and proteomic services include open access lab for trained users with GC/MS, LC/MS, high resolution LC/MS, and MALDI-TOF instruments, help with intact protein analysis, targeted quantitation, drug discovery support, pathway analysis, protein interactions, FFPE tissue analysis, both labeled and label-free proteomics, and more. Please contact SUMS to discuss these and other custom projects including new application development. | Mass, spectrometry, proteomics, training, analysis, targeted, quantitation, drug, discovery, pathway, protein, interaction, service, USEDit, ABRF |
lists: Agilent 6495 Triple Quadrupole LC/MS lists: Waters Select Series MRT lists: Waters Select Series Cyclic IMS lists: Stanford Bruker timsTOF Ultra nanoLC/MS is listed by: ABRF CoreMarketplace is related to: Xevo TQ-XS mass spectrometer is related to: Bruker Microflex MALDI TOF mass spectrometer is related to: Thermo LTQ-Orbitrap Elite nano LC/MS system is related to: Agilent 7890/5975 GC/MS system is related to: Bruker micrOTOF-Q II LC/MS system is related to: Bruker Scion TQ GC/MS mass spectrometer is related to: Stanford Shimadzu 8030 LC/MS mass spectrometer is related to: Thermo Exactive Orbitrap LC/MS system is related to: Thermo LTQ XL LC/MS system is related to: Thermo Orbitrap Fusion nanoLC/MS system is related to: Thermo QE-HFX mass spectrometer is related to: Thermo Vantage LC/MS mass spectrometer is related to: Waters Quattro Premier LC/MS system is related to: Thermo Orbitrap Eclipse nanoLC/MS system is related to: Thermo Exploris 480 nanoLC/MS system is related to: Thermo Exploris 240 LC/MS system is related to: Waters SQD2 LC/MS system is related to: Waters Andrew Pipetting Robot is related to: Stanford Sciex 7500+ Triple Quadrupole LC/MS system has parent organization: Stanford University; Stanford; California |
Vincent and Stella Coates ; NCI CA124435; NIH S10 RR027425; NIH S10 OD026962 |
Open | ABRF_489 | SCR_017801 | Vincent Coates Foundation Mass Spectrometry Laboratory | 2026-02-15 09:22:06 | 100 | |||||||
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Northwestern University Cancer Center Flow Cytometry Core Facility Resource Report Resource Website |
Northwestern University Cancer Center Flow Cytometry Core Facility (RRID:SCR_017766) | access service resource, core facility, service resource | Provides 6 cell sorters and 5 benchtop analyzers. Helps investigators to define their projects in the early stages of development to make optimal and efficient use of flow cytometry. Educates ALL users (faculty and staff) in the science and technology of flow cytometry. | Flow, cytometry, analysis, training, service, core | NCI CA060553; NIH Office of the Director S10 OD011996 |
Restricted | ABRF_315 | SCR_017766 | Robert H. Lurie Comprehensive Cancer Center Flow Cytometry Core Facility | 2026-02-15 09:22:14 | 0 | ||||||||
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Northwestern University School of Medicine Lurie Cancer Center Pathology Core Facility Resource Report Resource Website 1+ mentions |
Northwestern University School of Medicine Lurie Cancer Center Pathology Core Facility (RRID:SCR_017769) | PCF | access service resource, core facility, service resource | Centralized, comprehensive, core laboratory providing histology, immunohistochemistry, molecular analysis and extraction and microscopic evaluation services for human tissue-based studies. Serves integral marker studies that require biomarker-based treatment arm assignment. Performs procurement of fresh biospecimens for clinical trials and biobanking. | Pathology, histology, immunohistochemistry, molecular, analysis, extraction, microscopic, evaluation, human, tissue, biobanking, service, core | NCI CA060553 | ABRF_333 | SCR_017769 | Pathology Core Facility | 2026-02-15 09:21:26 | 2 | ||||||||
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New York University School of Medicine Langone Health Proteomics Laboratory Core Facility Resource Report Resource Website 1+ mentions |
New York University School of Medicine Langone Health Proteomics Laboratory Core Facility (RRID:SCR_017926) | access service resource, core facility, service resource | Core offers specialized expertise for analysis of proteins and peptides using mass spectrometry. Develops new methods and customized approaches for proteomic analysis and suggests experimental strategies and sample preparation prior to mass spectrometry analysis. Services include:comprehensive protein identification ,analysis of affinity purified complexes,characterizing protein post-translational modifications,de novo sequencing,label and label-free quantitation ,multiplexed quantitation global phosphorylation and ubiquitin analysis,analysis of laser-capture microdissected formalin-fixed paraffin-embedded tissue,secretome analysis,crosslinking analysis,disulfide mapping. | Analysis, protein, peptide, mass, spectrometry, proteomics, sample, preparation, de novo sequencing, quantitation, serice, core, ABRF, USEDit |
is listed by: ABRF CoreMarketplace is related to: USEDit has parent organization: New York University School of Medicine; New York; USA |
NCI P30 CA016087 | ABRF_820 | https://coremarketplace.org/?FacilityID=820&citation=1 | SCR_017926 | New York University School of Medicine Langone Health Proteomics Laboratory, Proteomics Laboratory | 2026-02-15 09:22:09 | 9 | |||||||
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Chicago University Integrated Small Animal Imaging Research Resource Core Facility Resource Report Resource Website 1+ mentions |
Chicago University Integrated Small Animal Imaging Research Resource Core Facility (RRID:SCR_017923) | iSAIRR | access service resource, core facility, service resource | Core offers imaging modalities, techniques, and services for in vivo imaging of small animals and ex vivo imaging of tissue/organ specimens. iSAIRR sub-cores feature magnetic resonance imaging and spectroscopy (MRIS); optical imaging (bioluminescence and fluorescence); positron emission tomography, single photon emission computed tomography, and computed tomography (PET/SPECT/CT).Services include Assistance with experimental design,Assisted and/or independent image acquisition,Veterinary support for all imaging modalities,Assistance with data processing and interpretation. | Imaging, in vivo, small, animal, ex vivo, tissue, organ, magnetic, resonance, spectroscopy, optical, positron, emission, tomography, single, photon, coputed, tomography, data, veterinarian, support, service, core, ABRF | is listed by: ABRF CoreMarketplace | NCI P30 CA014599 | Open | ABRF_805 | SCR_017923 | Integrated Small Animal Imaging Research Resource | 2026-02-15 09:21:29 | 2 | ||||||
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North Carolina University at Chapel Hill R.L. Juliano Structural Bioinformatics Core Facility Resource Report Resource Website |
North Carolina University at Chapel Hill R.L. Juliano Structural Bioinformatics Core Facility (RRID:SCR_017836) | access service resource, core facility, service resource | Core provides consultations and collaborations on research studies requiring computational structural biology methods. Analyses available are to study of static structures, molecular dynamics studies for analyzing contribution of dynamic and collective motions to macromolecular functionality. Trains researchers in computational structural biology techniques, or works in collaborative manner with researchers.Provides access to software tools for protein and DNA sequence analysis, protein fold determination, homology modeling, active site identification, and analysis of effects of various mutations on structure and function of protein, along with additional computational analyses. | Computational, structural, biology, method, analysis, training, service, core, ABRF | is listed by: ABRF CoreMarketplace | NCI P30 CA016086 | Open | ABRF_628 | SCR_017836 | R. L. Juliano Structural Bioinformatics Core facility at UNC-Chapel Hill | 2026-02-15 09:22:16 | 0 | |||||||
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North Carolina University at Chapel Hill School of Medicine Biomolecular NMR Laboratory Core Facility Resource Report Resource Website |
North Carolina University at Chapel Hill School of Medicine Biomolecular NMR Laboratory Core Facility (RRID:SCR_017841) | access service resource, core facility, service resource | Core to support academic and industrial users. Spectrometer time is available to trained users for an hourly fee. Lab manager trains new users, consults to determine whether NMR will be useful in their research, and helps design experimental plan to obtain information they need. Manager also operates spectrometer for users whose experiments do not justify time and expense of individual training. | Biomolecular, NMR, laboratory, spectrometer, training, experimental, design, service, core, ABRF | is listed by: ABRF CoreMarketplace | NCI P30 CA016086; UNC University Cancer Research Fund ; Cancer Center Support Gran |
Open | ABRF_625 | SCR_017841 | UNC Biomolecular NMR Laboratory, NMR Spectroscopy | 2026-02-15 09:22:08 | 0 | |||||||
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North Carolina University at Chapel Hill School of Medicine Protein Expression and Purification Core Facility Resource Report Resource Website |
North Carolina University at Chapel Hill School of Medicine Protein Expression and Purification Core Facility (RRID:SCR_017843) | access service resource, core facility, service resource | Core specializes in production of pure, functional proteins for structural, biophysical, and biochemical studies. Facility offers three categories of service:Protein Expression,Protein Purification,Scientific Consultation, Mentoring, and Training; Offers Isotope labeled proteins for NMR;High production scales for immunizations, drug discovery, structural biology;Endotoxin-free protein production;Stable cell line generation;Expert baculovirus expression;Custom packages to efficiently suit your needs. | Production, protein, expression, purification, consultation, training, isotope, labeled, immunization, drug, discovery, cell, line, generation, custom, service, core, ABRF | is listed by: ABRF CoreMarketplace | NCI P30 CA016086 | Open | ABRF_627 | SCR_017843 | Protein Expression and Purification | 2026-02-15 09:21:27 | 0 | |||||||
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University of California Davis Flow Cytometry Shared Resource Laboratory Core Facility Resource Report Resource Website |
University of California Davis Flow Cytometry Shared Resource Laboratory Core Facility (RRID:SCR_017826) | access service resource, core facility, service resource | Core provides access to expertise and instrumentation for analytical flow cytometry, cell sorting and laser scanning cytometry.Cell sorting and analytical cytometers are located at three sites in Davis and Sacramento for research use on recharge basis. Provides cell sorters for assisted sorting on appointment basis and provides training to investigators in acquiring data on analytic cytometers.Can advise on experiment design for flow cytometry, provides training to enable independent use of analytical cytometers, and familiarize investigators with popular data analysis software tools such as BD Diva and CellQuest, FlowJo, ModFit and iBrowser. | Flow, cytometry, laser, scanning, cell, sorting, data, analysis, training, service, core, ABRF, USEDit |
is listed by: ABRF CoreMarketplace is related to: USEDit has parent organization: University of California at Davis; California; USA |
NCI P30CA093373 | Open | ABRF_612 | SCR_017826 | UC Davis Flow Cytometry Shared Resource Laboratory, University of California Davis Health Flow Cytometry Shared Resource Laboratory Core Facility | 2026-02-15 09:21:27 | 0 | |||||||
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University of Virginia School of Medicine Flow Cytometry Core Facility Resource Report Resource Website 50+ mentions |
University of Virginia School of Medicine Flow Cytometry Core Facility (RRID:SCR_017829) | access service resource, core facility, service resource | Services include unassisted and assisted sample acquisition, cell sorting, mass cytometry (CyTOF), Luminex cytokine assays, antibody conjugation and data analysis. | Sample, acquisition, cell, sorting, mass, cytometry, CyTOF, Luminex, cytokine, assay, antibody, conjugation, data, analysis, service, core, ABRF | is listed by: ABRF CoreMarketplace | NCI P30 CA044579 | Restricted | ABRF_611 | SCR_017829 | Virginia University School of Medicine Flow Cytometry Core Facility, UVA Flow Cytometry Core Facility, Flow Cytometry Facility | 2026-02-15 09:22:07 | 76 |
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