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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Vaccine Ontology Resource Report Resource Website 1+ mentions |
Vaccine Ontology (RRID:SCR_006271) | VO | ontology, data or information resource, controlled vocabulary | A biomedical ontology in the vaccine domain | owl |
is used by: Ontology of Vaccine Adverse Events is listed by: BioPortal |
PMID:21871085 | nlx_157621 | SCR_006271 | 2026-02-16 09:46:40 | 1 | ||||||||
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Alzheimer's disease ontology Resource Report Resource Website 1+ mentions |
Alzheimer's disease ontology (RRID:SCR_010289) | ADO | ontology, data or information resource, controlled vocabulary | An open, public ontology representing relevant knowledge on Alzheimer's disease. | owl, ontology, alzheimer | is listed by: BioPortal | Alzheimer's disease | Public, Open unspecified license | nlx_157314 | SCR_010289 | Alzheimers disease ontology | 2026-02-16 09:47:43 | 1 | ||||||
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Fungal Gross Anatomy Ontology Resource Report Resource Website |
Fungal Gross Anatomy Ontology (RRID:SCR_010322) | FAO | ontology, data or information resource, controlled vocabulary | A structured controlled vocabulary for the anatomy of fungi. | obo | is listed by: BioPortal | nlx_157409 | http://www.yeastgenome.org/fungi/fungal_anatomy_ontology/ | SCR_010322 | 2026-02-16 09:47:47 | 0 | ||||||||
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Human Developmental Anatomy Ontology abstract version 1 Resource Report Resource Website |
Human Developmental Anatomy Ontology abstract version 1 (RRID:SCR_010323) | EHDAA | ontology, data or information resource, controlled vocabulary | A structured controlled vocabulary of stage-specific anatomical structures of the human. It has been designed to mesh with the mouse anatomy and incorporates each Carnegie stage of development (CS1-20). The abstract version of the human developmental anatomy ontology compresses all the tissues present over Carnegie stages 1-20 into a single hierarchy. The heart, for example, is present from Carnegie Stage 9 onwards and is thus represented by 12 EHDA IDs (one for each stage). In the abstract mouse, it has a single ID so that the abstract term given as just ''heart'' really means ''heart (CS 9-20)''. Timing details will be added to the abstract version of the ontology in a future release. | obo | is listed by: BioPortal | nlx_157429 | SCR_010323 | 2026-02-16 09:47:43 | 0 | |||||||||
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G Protein-Coupled Receptor BioAssays Ontology Resource Report Resource Website 1+ mentions |
G Protein-Coupled Receptor BioAssays Ontology (RRID:SCR_010324) | BAO-GPCR | ontology, data or information resource, controlled vocabulary | Ontology (http://www.bioassayontology.org/bao_gpcr) that describes pharmacology, biochemistry and physiology of these important and therapeutically promising class of academic and pharmaceutical research targets. Incorporation and comparison of various small molecule screening data sets, such as those deposited in PubChem, ChEMBL, KEGG, PDSP, and/or IUPHAR databases, requires a formalized electronic organization system. In order to bridge the gap between the overflow of HTS data and the bottleneck of integrated analysis tools, herein, we provide the first comprehensive GPCR ontology. The development and utility of GPCR ontology was based on previously developed BioAssay Ontology (BAO). The GPCR ontology contains information about biochemical, pharmacological, and functional properties of individual GPCRs as well as GPCR-selective ligands inclusive of their HTS screening results and other records. This provides the first all-inclusive GPCR ontology with all available data to model the relationship between the GPCR binding sites and their physiologic and pharmacologic role in physiology via small molecule chemical structures. We developed this system using emerging semantic technologies, by leveraging existing and descriptive domain level ontologies. | owl |
is listed by: BioPortal has parent organization: Bioassay Ontology |
nlx_157410 | SCR_010324 | 2026-02-16 09:47:42 | 5 | |||||||||
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Galen Ontology Resource Report Resource Website |
Galen Ontology (RRID:SCR_010325) | GALEN | ontology, data or information resource, controlled vocabulary | A translation of the full Galen ontology (from the OpenGALEN project) into the OWL description logic. | owl | is listed by: BioPortal | nlx_157411 | SCR_010325 | 2026-02-16 09:47:44 | 0 | |||||||||
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Gene Ontology Extension Resource Report Resource Website |
Gene Ontology Extension (RRID:SCR_010327) | GO-EXT | ontology, data or information resource, controlled vocabulary | An extension of the Gene Ontology. | obo |
is listed by: BioPortal has parent organization: Gene Ontology |
nlx_157414 | SCR_010327 | 2026-02-16 09:47:43 | 0 | |||||||||
|
Crop Ontology Resource Report Resource Website 1+ mentions |
Crop Ontology (RRID:SCR_010299) | CO | ontology, data or information resource, controlled vocabulary | Ontology that includes crop-specific trait ontologies for several economically important plants like rice, wheat, maize, potato, musa, chickpea and sorghum along with other important domains for crop research such as germplasm, passport, trait measurement scales, experimental design factors etc. | obo | is listed by: BioPortal | nlx_157378 | http://cropontology.org/ | SCR_010299 | 2026-02-16 09:47:42 | 8 | ||||||||
|
Amino Acid Ontology Resource Report Resource Website |
Amino Acid Ontology (RRID:SCR_010290) | AMINO-ACID | ontology, data or information resource, controlled vocabulary | An ontology of amino acids and their properties. Inferred version. | owl | is listed by: BioPortal | nlx_157315 | SCR_010290 | 2026-02-16 09:47:46 | 0 | |||||||||
|
Biochemical Substructure Ontology Resource Report Resource Website |
Biochemical Substructure Ontology (RRID:SCR_010185) | BICSO | ontology, data or information resource, controlled vocabulary | Biochemical Substructure Ontology | protege | is listed by: BioPortal | nlx_157330 | SCR_010185 | 2026-02-16 09:47:40 | 0 | |||||||||
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KB Bio 101 Resource Report Resource Website |
KB Bio 101 (RRID:SCR_010268) | AURA | ontology, data or information resource, controlled vocabulary | Ontology of the AURA + Inquire project at SRI International, Menlo Park. | owl | is listed by: BioPortal | Creative Commons Attribution-NonCommercial-ShareAlike License, v3 | nlx_157455 | SCR_010268 | KB_Bio_101 | 2026-02-16 09:47:42 | 0 | |||||||
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Current Procedural Terminology Resource Report Resource Website |
Current Procedural Terminology (RRID:SCR_010301) | CPT | ontology, data or information resource, controlled vocabulary | Ontology of current procedural terminology. | umls | is listed by: BioPortal | nlx_157380 | SCR_010301 | 2026-02-16 09:47:43 | 0 | |||||||||
|
Bilingual Ontology of Alzheimer Resource Report Resource Website |
Bilingual Ontology of Alzheimer (RRID:SCR_010149) | ONTOAD | ontology, data or information resource, controlled vocabulary | A bilingual (English-French) domain ontology for modeling knowledge about Alzheimer's Disease and Related Syndromes. | owl, alzheimer, ontology, bilingual | is listed by: BioPortal | Alzheimer's disease, Alzheimer's Related Syndrome | nlx_157325 | SCR_010149 | 2026-02-16 09:47:43 | 0 | ||||||||
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Dataset processing Resource Report Resource Website |
Dataset processing (RRID:SCR_010303) | ONL-DP | ontology, data or information resource, controlled vocabulary | Ontology that is a module of the OntoNeuroLOG ontology, that covers the domain of Datasets and the processing of datasets developed in the context of the NeuroLOG project, a french project aiming at integrating distributed heterogeous resources in neuroimaging. It includes a detailed taxonomy of datasets in the area of neuroimaging (and especially MR imaging) as well as a taxonomy of medical image processing. | owl neuroimaging, mri | is listed by: BioPortal | French National Research Agency ANR-06-TLOG-024 | nlx_157382 | SCR_010303 | 2026-02-16 09:47:42 | 0 | ||||||||
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BRENDA Tissue and Enzyme Source Ontology Resource Report Resource Website 1+ mentions |
BRENDA Tissue and Enzyme Source Ontology (RRID:SCR_010031) | BTO | ontology, data or information resource, controlled vocabulary | A structured controlled vocabulary for the source of an enzyme. It comprises terms for tissues, cell lines, cell types and cell cultures from uni- and multicellular organisms. | obo |
is used by: TISSUES is listed by: BioPortal has parent organization: BRENDA |
nlx_157323 | SCR_010031 | 2026-02-16 09:47:39 | 1 | |||||||||
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Artificial Intelligence Rheumatology Consultant System Ontology Resource Report Resource Website |
Artificial Intelligence Rheumatology Consultant System Ontology (RRID:SCR_010274) | AI-RHEUM | ontology, data or information resource, controlled vocabulary | Ontology used for the diagnosis of rheumatologic diseases. AI/RHEUM contains findings, such as clinical signs, symptoms, laboratory test results, radiologic observations, tissue biopsy results, and intermediate diagnosis hypotheses. Findings and hypotheses, which include definitions, are used to reach diagnostic conclusions with definite, probable, or possible certainty. AI/RHEUM is used by clinicians and informatics researchers. | umls | is listed by: BioPortal | Rheumatologic disease | nlx_157320 | SCR_010274 | 2026-02-16 09:47:41 | 0 | ||||||||
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Leukocyte Surface Marker Ontology Resource Report Resource Website |
Leukocyte Surface Marker Ontology (RRID:SCR_010275) | LSM | ontology, data or information resource, controlled vocabulary | An ontology of CD markers for lymphocyte classification in the cell ontology, and other categories of surface and secreted proteins useful for discriminating between lymphocyte subsets by flow cytometry, ELISPOT, ELISA and other assays typically used for phenotypic identification of individual lymphocytes or lymphocyte populations have been included. | obo | is listed by: BioPortal | nlx_157457 | SCR_010275 | 2026-02-16 09:47:43 | 0 | |||||||||
|
Fanconi Anemia Ontology Resource Report Resource Website |
Fanconi Anemia Ontology (RRID:SCR_010319) | IFAR | ontology, data or information resource, controlled vocabulary | An application ontology devoted to the standardized recording of data related to Fanconi Anemia (FA). This ontology was created using an OWL file provided by Dr. Ada Hamish (and Francois Schiettecatte) at the Centers for Mendelian Genetics, with their permission. Their original ontology can be found at: http://phenodb.net/help/features. Modifications were made using HPO, OMIM, NCI, and SNOMED. Novel classes pertaining to FA were added and defined as appropriate. | owl | is listed by: BioPortal | Fanconi Anemia | nlx_157403 | http://lab.rockefeller.edu/smogorzewska/ifar/ | SCR_010319 | 2026-02-16 09:47:43 | 0 | |||||||
|
Electrocardiography Ontology Resource Report Resource Website |
Electrocardiography Ontology (RRID:SCR_010313) | ECG | ontology, data or information resource, controlled vocabulary | Ontology for describing electrocardiograms, their capture method(s) and their waveforms. | owl |
is listed by: BioPortal has parent organization: CardioVascular Research Grid (CVRG) |
nlx_157394 | SCR_010313 | ECG Ontology | 2026-02-16 09:47:44 | 0 | ||||||||
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Cellular microscopy phenotype ontology Resource Report Resource Website |
Cellular microscopy phenotype ontology (RRID:SCR_010282) | CMPO | ontology, data or information resource, controlled vocabulary | A species neutral ontology for describing general phenotypic observations relating to the whole cell, cellular components, cellular processes and cell populations. CMPO is an application ontology developed in OWL that contains precomposed phenotypes descriptions that are defined using the Gene Ontology (GO) and the Phenotype Trait Ontology (PATO). | owl, phenotype | is listed by: BioPortal | nlx_157357 | https://github.com/EBISPOT/CMPO | SCR_010282 | 2026-02-16 09:47:46 | 0 |
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