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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Eagle Resource Report Resource Website 50+ mentions |
Eagle (RRID:SCR_015991) | software resource, software toolkit | Software package for statistical estimation of haplotype phase either within a genotyped cohort or using a phased reference panel in large scale sequencing. The package includes Eagle1 (to harness identity-by-descent among distant relatives to rapidly call phase using a fast scoring approach) and Eagle2 (to analyze a full probabilistic model similar to the diploid Li-Stephens model used by previous HMM-based methods. | hmm, hidden markov model, statistic, estimation, haplotype, phase, reference, panel, sequencing, algorithm, analysis, probability |
is listed by: Debian is listed by: OMICtools has parent organization: Broad Institute |
NHGRI R01 HG006399; NIMH R01 MH101244; NHGRI F32HG007805; Wellcome Trust WT098051; Austrian Science Fund J-3401; NHGRI HG007022; NHLBI HL117626; Fannie and John Hertz Foundation ; NCRR S10 RR028832; NWO 480-05-003; Dutch Brain Foundation |
PMID:27694958 PMID:27270109 |
Free, Available for download, Freely available | OMICS_14099, SCR_017262 | https://sources.debian.org/src/bio-eagle/ https://github.com/poruloh/Eagle https://data.broadinstitute.org/alkesgroup/Eagle/downloads/ |
SCR_015991 | Bio-eagle, Eagle1, Eagle2 | 2026-02-16 09:48:58 | 51 | |||||
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ALICE Resource Report Resource Website 1+ mentions |
ALICE (RRID:SCR_017463) | software resource, software toolkit | Software tool for automatic localization of intra-cranial electrodes for clinical and high density grids. Software for coregistering high density ECoG grids to MRI anatomy. | Localization, intra-cranial, electrode, clinical, high density, grid, coregistering, ECoG, MRI, BRAIN Initiative | is recommended by: BRAIN Initiative | NIMH MH111417; BrainGain Smart Mix Programme ; Dutch Technology Foundation ; Netherlands Organization for Scientific Research |
PMID:29100838 | Restricted | SCR_017463 | Automatic Localization of Intra-Cranial Electrodes | 2026-02-16 09:49:14 | 1 | |||||||
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Mouse Brain Atlases Resource Report Resource Website 1+ mentions |
Mouse Brain Atlases (RRID:SCR_007127) | Mouse Brain Atlases | data or information resource, atlas | High-resolution electronic atlases for mouse strains c57bl/6j, a/j, and dba/2j in either coronal or horizontal section. About this Atlas: The anterior-posterior coordinates are taken from an excellent print atlas of a C57BL/6J brain by K. Franklin and G. Paxinos (The Mouse Brain in Stereotaxic Coordinates, Academic Press, San Diego, 1997, ISBN Number 0-12-26607-6; Library of Congress: QL937.F72). The abbreviations we have used to label the sections conform to those in the Franklin-Paxinos atlas. A C57BL/6J mouse brain may contain as many as 75 million neurons, 23 million glial cells, 7 million endothelial cells associated with blood vessels, and 3 to 4 million miscellaneous pial, ependymal, and choroid plexus cells (see data analysis in Williams, 2000). We have not yet counted total cell number in DBA/2J mice, but the counts are probably appreciably lower.The brain and sections were all processed as described in our methods section. The enlarged images have a pixel count of 1865 x 1400 and the resolution is 4.5 microns/pixel for the processed sections.Plans: In the next several years we hope to add several additional atlases of the same sort for other strains of mice. A horizontal C57BL/6J atlas and a DBA/2J coronal atlas were completed by Tony Capra, summer 2000, and additional atlases may be made over the next several years. As describe in the MBL Procedures Section is not hard to make your own strain-specific atlas from the high resolution images in the MBL. | genetics, anatomy, coronal, cerebellum, c57bl/6j, dba/2j, a/j, horizontal, morphology, subcortical, volume | has parent organization: Mouse Brain Library | Human Brain Project ; NIDA ; NSF ; NIMH P20-MH 62009 |
nif-0000-00044 | SCR_007127 | 2026-02-16 09:46:53 | 7 | ||||||||
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TrumpetPlots Resource Report Resource Website 1+ mentions |
TrumpetPlots (RRID:SCR_023742) | 3d visualization software, software application, data processing software, software resource, software toolkit, data visualization software | Software R package to visualize relationship between allele frequency and effect size in genetic association studies. | genetic association studies, visualization of genetic association studies, allele frequency, effect size, genetics, | NIMH R01 MH122866; Brain and Behavior Research Foundation ; Icahn School of Medicine at Mount Sinai |
DOI:10.1101/2023.04.21.23288923 | Free, Available for downlaod, Freely available | https://juditgg.shinyapps.io/shinytrumpets/ | SCR_023742 | 2026-02-17 10:04:28 | 1 | ||||||||
|
Allen Brain Cell Atlas Resource Report Resource Website 10+ mentions |
Allen Brain Cell Atlas (RRID:SCR_024440) | data or information resource, expression atlas, atlas | Provides platform for visualizing multimodal single cell data across mammalian brain and aims to empower researchers to explore and analyze multiple whole brain datasets simultaneously. Allen Institute and its collaborators continue to add new modalities, species, and insights to the ABC Atlas. Atlas as part of Brain Knowledge Platform will enable neuroscience community to identify more cell types in brain; Investigate spatial location of cell types; Investigate gene expression and co-expression patterns in cell types; Refine boundaries and knowledge of brain regions defined by gene expression. | visualizing multimodal single cell data across mammalian brain, explore and analyze multiple whole brain datasets, identify cell types in brain, brain regions defined by gene expression, |
has parent organization: Allen Institute is organization facet of: BICCN |
NIMH MH130919 | Free, Freely available | SCR_024440 | Allen Brain Cell (ABC) Atlas, The Allen Brain Cell Atlas, ABC Atlas | 2026-02-17 10:04:49 | 42 | ||||||||
|
Harvard - Oxford Cortical Structural Atlas Resource Report Resource Website 100+ mentions |
Harvard - Oxford Cortical Structural Atlas (RRID:SCR_001476) | Atlases | data or information resource, reference atlas, atlas | Probabilistic atlases covering 48 cortical and 21 subcortical structural areas, derived from structural data and segmentations kindly provided by the Harvard Center for Morphometric Analysis. T1-weighted images of 21 healthy male and 16 healthy female subjects (ages 18-50) were individually segmented by the CMA using semi-automated tools developed in-house. The T1-weighted images were affine-registered to MNI152 space using FLIRT (FSL), and the transforms then applied to the individual labels. Finally, these were combined across subjects to form population probability maps for each label. Segmentations used to create these atlases were provided by: David Kennedy and Christian Haselgrove, Centre for Morphometric Analysis, Harvard; Bruce Fischl, the Martinos Center for Biomedical Imaging, MGH; Janis Breeze and Jean Frazier from the Child and Adolescent Neuropsychiatric Research Program, Cambridge Health Alliance; Larry Seidman and Jill Goldstein from the Department of Psychiatry of Harvard Medical School. | male, female, t1-weighted image, cortical, subcortical, neuroanatomy, cortex |
has parent organization: Harvard University; Cambridge; United States is a plug in for: FSL |
Healthy | NCRR R01 RR16594-01A1; NIMH K01 MH01798; NINDS R01 NS052585-01; NIMH K08 MH01573 |
Free, Freely available | nlx_152707 | SCR_001476 | , Harvard Oxford Cortical Structural Atlas, Harvard-Oxford cortical and subcortical structural atlases, Harvard Oxford Atlas | 2026-02-17 09:59:40 | 144 | |||||
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Functional Regression Analysis of DTI Tract Statistics Resource Report Resource Website |
Functional Regression Analysis of DTI Tract Statistics (RRID:SCR_002293) | FRATS | image analysis software, software application, data processing software, software resource | Software for the analysis of multiple diffusion properties along fiber bundle as functions in an infinite dimensional space and their association with a set of covariates of interest, such as age, diagnostic status and gender, in real applications. The resulting analysis pipeline can be used for understanding normal brain development, the neural bases of neuropsychiatric disorders, and the joint effects of environmental and genetic factors on white matter fiber bundles. | computational neuroscience, imaging genomics, magnetic resonance, regression analysis, dti, statistics |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of North Carolina at Chapel Hill; North Carolina; USA |
NSF BCS-08-26844; NCRR UL1-RR025747-01; NIMH MH086633; NIA AG033387; NIMH MH064065; NICHD HD053000; NIMH MH070890; NINDS R01NS055754; NIBIB U54 EB005149-01 |
PMID:20335089 | Academic Free License | nlx_155629 | SCR_002293 | Functional Regression Analysis of DTI | 2026-02-17 09:59:45 | 0 | |||||
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DTI-TEMPLATE-RHESUS-MACAQUES Resource Report Resource Website 1+ mentions |
DTI-TEMPLATE-RHESUS-MACAQUES (RRID:SCR_002482) | DTI-TEMPLATE-RHESUS-MACAQUES | data or information resource, reference atlas, atlas | A population-specific DTI template for young adolescent Rhesus Macaque (Macaca mulatta) monkeys using 271 high-quality scans. Using such a large number of animals in generating a template allows it to account for variability in the species. Their DTI template is based on the largest number of animals ever used in generating a computational brain template. It is anticipated that their DTI template will help facilitate voxel-based and tract specific WM analyses in non-human primate species, which in turn may increase our understanding of brain function, development, and evolution. | magnetic resonance, dti, young, adolescent, brain |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of Wisconsin-Madison; Wisconsin; USA |
NIMH MH62015; NIMH MH084051; NIMH MH080826; NIMH MH46729; NIMH MH81884; NIMH MH018931; NIBIB R03-EB009321 |
PMID:21803162 | Free, Available for download, Freely available | nlx_155872 | SCR_002482 | 2026-02-17 09:59:57 | 3 | ||||||
|
FMRLAB Resource Report Resource Website 1+ mentions |
FMRLAB (RRID:SCR_005164) | FMRLAB | software application, data processing software, software resource | A Matlab toolbox for fMRI data analysis using Independent Component Analysis (ICA). It provides an integrated environment to manage, process and analyze fMRI data in a single framework so that users can complete the analysis without switching between software. In addition, it provides an interactive Matlab graphic user interface (GUI). All the necessary processes to apply ICA to fMRI data and review its results can be run from the graphic interface. The FMRLAB processing flow is straightforward. Custom analyses can be performed with Matlab scripts using the FMRLAB functions and data structure. Since fMRI data analysis is a complex enterprise, including digital image processing, statistical analysis and data visualization, an integrated framework combining processing elements is desired eagerly by users in the neuroimaging community. Recently, large number of software tools for data analysis and visualization have been developed for this purpose. However, most of these tools use model-based statistical methods which assume that the users know the hemodynamic response (HR) for their paradigm in advance and can specify a reasonable HR model. Often, however, accurate or reasonable response HR models are unavailable. An alternative data-driven method, infomax ICA (McKeown et al., 1998), does not require that an a priori HR model, instead deriving HRs of spatially independent components of the entire data set from the higher-order statistics of the data themselves. FMRLAB is a toolbox running under Matlab containing necessary components for data-driven fMRI data analysis using the highly reliable infomax ICA algorithm (Bell & Sejnowski, 1995), normalized (Amari, 1999), extended (Lee, Girolami and Sejnowski, 1999) and automated by Makeig et al. FMRLAB has been developed under Matlab 6.1 running on Red Hat Linux. FMRLAB Features * Graphic user interface * Flexible data importing * Interactive data plotting * Computationally efficient * Defined FMRI data structure * Independent component browser * Smooth, transparent component exporting and spatial normalization process * Interface with other software for further analysis or visualization. * SPM-style component plots (MIP, 2-D slice overlay and 3-D) | fmri, fmr lab, anatomy, brain mapping, data analysis, independent component analysis, neuroimaging, image processing, statistical analysis, data visualization, matlab |
is related to: FreeSurfer has parent organization: Swartz Center for Computational Neuroscience |
NIMH 5RO1MHO61619-03 | nif-0000-00077 | SCR_005164 | 2026-02-17 10:00:48 | 3 | ||||||||
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ImageJ Resource Report Resource Website 10000+ mentions |
ImageJ (RRID:SCR_003070) | software application, image processing software, data processing software, software resource, software toolkit, image analysis software | Open source Java based image processing software program designed for scientific multidimensional images. ImageJ has been transformed to ImageJ2 application to improve data engine to be sufficient to analyze modern datasets. | image, data, processing, analysis, datasets, visualization, |
uses: NeuriteTracer is used by: Mouse Behavioral Analysis Toolbox is used by: Focinator is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: Debian is listed by: SoftCite is related to: uManager is related to: Fiji is related to: NIH Image is related to: TrakEM2 is related to: BioVoxxel Toolbox is related to: Golddigger is related to: Analyze Complex Roots Tool is related to: Analyze Spheroid Cell Invasion In 3D Matrix is related to: PyImageJ has parent organization: Research Services Branch National Institutes of Mental Health has plug in: Diffusing Tensor Imaging in Java has plug in: OrientationJ has plug in: GRatio for ImageJ has plug in: BioVoxxel Toolbox has plug in: WormSizer has plug in: MultiStackReg has plug in: Iterative Deconvolve 3D has plug in: Thunder STORM has plug in: Whisker tracking macro has plug in: 3D Roi Manager has plug in: 3D Objects Counter has plug in: BoneJ has plug in: QuickFigures has plug in: ObjectJ has plug in: ADAPT has plug in: DHM Utilities has plug in: Sholl Analysis has plug in: nTracer has plug in: IHC Profiler has plug in: MicrobeJ has plug in: AccPbFRET has plug in: RiFRET has plug in: JaCoP has plug in: Cell Counter Plugin for ImageJ has plug in: Puncta Analyzer has plug in: SpinalJ works with: Intensity Ratio Nuclei Cytoplasm Tool works with: 3D ImageJ Suite works with: Wound Healing Tool works with: MorphoLibJ |
NINDS ; NIGMS RC2 GM092519; Wellcome Trust Strategic Award 095931; the Laboratory for Optical and Computational Instrumentation ; the Morgridge Institute for Research ; NIH ; NIMH |
PMID:22930834 PMID:29187165 DOI:10.1038/nmeth.2089 |
Free, Available for download, Freely available | ascl:1206.013, rid_000070, Q1659584, 2012ascl.soft06013R, nif-0000-30467, SCR_018407 | https://imagej.net/ij/ http://rsbweb.nih.gov/ij https://imagej.nih.gov/ij/download.html https://imagej.nih.gov/ij/ https://sources.debian.org/src/imagej/ |
https://imagej.nih.gov/ij/, http://www.nitrc.org/projects/incf_imagej, | SCR_003070 | Image J, ImageJ - Image Processing and Analysis in Java, ImageJ2, ImageJ | 2026-02-17 09:59:55 | 27070 | ||||
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Chronux Resource Report Resource Website 500+ mentions |
Chronux (RRID:SCR_005547) | Chronux | data analysis software, software application, data processing software, software resource | Open-source software package for the analysis of neural data. Chronux routines may be employed in the analysis of both point process and continuous data, ranging from preprocessing, exploratory and confirmatory analysis. The current release is implemented as a MATLAB library. Chronux offers several routines for computing spectra and coherences for both point and continuous processes. In addition, it also offers several general purpose routines that were found useful such as a routine for extracting specified segments from data, or binning spike time data with bins of a specified size. Since the data can be continuous valued, point process times, or point processes that are binned, methods that apply to all these data types are given in routines whose names end with ''''c'''' for continuous, ''''pb'''' for binned point processes, and ''''pt'''' for point process times. Thus, mtspectrumc computes the spectrum of continuous data, mtspectrumpb computes a spectrum for binned point processes, and mtspectrumpt compute spectra for data consisting of point process times. Hybrid routines are also available and similarly named - for instance coherencycpb computes the coherency between continuous and binned point process data. | fmri, brain mapping, brain, matlab |
is related to: Zebra Finch Song Learning Consortium has parent organization: Cold Spring Harbor Laboratory |
NIMH | Open-source. Please cite. | nif-0000-00082 | SCR_005547 | Chronux Analysis Software | 2026-02-17 10:00:54 | 535 | ||||||
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NIMH Brain Tissue Collection Resource Report Resource Website 1+ mentions |
NIMH Brain Tissue Collection (RRID:SCR_008726) | NIMH Brain Bank | biomaterial supply resource, tissue bank, brain bank, material resource | A collection of brain tissue from individuals suffering from schizophrenia, bipolar disorder, depression, anxiety disorders, and substance abuse, as well as healthy individuals. The research mission of the NIMH Brain Bank is to better understand the underlying biological mechanisms and pathways that contribute to schizophrenia and other neuropsychiatric disorders, as well as to study normal human brain development. | schizophrenia, bipolar disorder, depressive disorder, anxiety disorder, substance abuse, healthy, neurological disorder, mental disease, suicide, tourette's syndrome, dementia, brain development, brain, brain tissue, tissue, post-mortem, normal control, ClinicalTrials.gov Identifier: NCT00001260 |
is listed by: One Mind Biospecimen Bank Listing has parent organization: NIMH Intramural Research Program Clinical Brain Disorders Branch |
Schizophrenia, Bipolar Disorder, Depressiive Disorder, Anxiety Disorder, Drug Abuse, Healthy, Neurological disorder, Mental disease, Suicide, Tourette's Syndrome, Dementia, Normal control, Aging | NIMH | Samples available to investigators approved by an NIMH Oversight Committee, Molecular and genetic data available to the scientific community | nlx_143684 | http://cbdb.nimh.nih.gov/neuropath.htm | SCR_008726 | 2026-02-17 10:01:23 | 1 | |||||
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MNE-BIDS Resource Report Resource Website 1+ mentions |
MNE-BIDS (RRID:SCR_018766) | MNE-BIDS | data management software, software application, data processing software, data analysis software, software resource, software toolkit | Software Python package to link Brain Imaging Data Structure and MNE-Python software for analyzing neurophysiology data with goal to make analyses faster to code, more robust to errors, and easily shareable with colleagues. Provides programmable interface for BIDS datasets in electrophysiology with MNE-Python. Used for organizing electrophysiological data into BIDS format and facilitating their analysis. | Data structure, brain imaging, Minimum Norm current Estimates, M/EEG data, neurophysiology data analysis, BIDS dataset, electrophysiology, BIDS format organization |
is related to: MNE software works with: Brain Imaging Data Structure (BIDs) |
Academy of Finland ; NINDS R01 NS10 4585; NIMH R24 MH114705; Bezos Family Foundation ; Simms Mann Foundation ; Google Summer of Code 2019 |
DOI:10.21105/joss.01896 | Free, Available for download, Freely available | https://mne.tools/mne-bids/stable/index.html | SCR_018766 | Minimum Norm current Estimates - Brain Imaging Data Structure | 2026-02-17 10:03:32 | 3 | |||||
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Common Cell Type Nomenclature Resource Report Resource Website 1+ mentions |
Common Cell Type Nomenclature (RRID:SCR_021124) | data or information resource, narrative resource, standard specification, controlled vocabulary | Framework for creating brain cell type nomenclature, and include examples using published datasets. System allows designation of cell types with or without hierarchical organization. Nomenclature convention initially applied to brain cells and types, is intended to encompass existing naming strategies used in publications across diverse research teams. Allows tracking of many different taxonomies, including those from different organ systems or across diverse areas of bioscience. | Allen Cell Type Nomenclature CCN, Allen Brain Map, Common Cell Type Nomenclature, CCN, creating brain cell type nomenclature, hierarchical organization, nomenclature convention, naming strategies, taxonomies tracking |
is related to: Allen Brain Atlas is related to: Brain Data Standards Ontology is related to: Cell Type Knowledge Explorer has parent organization: Allen Institute |
Allen Institute ; NIMH U19 MH114830; NIMH U01 MH114812 |
PMID:33372656 | Free, Available for download, Freely available | https://github.com/AllenInstitute/nomenclature, https://github.com/AllenInstitute/CCN | SCR_021124 | Allen Cell Type Common Cell type Nomenclature, Allen Brain Map Cell Type Nomenclature CCN | 2026-02-17 10:03:19 | 3 | ||||||
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Minian Resource Report Resource Website 1+ mentions |
Minian (RRID:SCR_022601) | software application, data processing software, data analysis software, software resource, software toolkit | Software miniscope analysis pipeline that requires low memory and computational demand so it can be run without specialized hardware. Offers interactive visualization that allows users to see how parameters in each step of pipeline affect output. | Miniscope, analysis pipeline, calcium imaging, mouse, Visualization, OpenBehavior |
is listed by: OpenBehavior has parent organization: Icahn School of Medicine at Mount Sinai; New York; USA |
NIMH DP2MH122399; NIMH R01MH120162; NIBIB R01EB028166; NSF 1926800; NSF 2046583; NINDS U01NS094286; NSF 1700408; NIA F32AG067640; NINDS R03 NS111493; NIDA R21 DA049568; NINDS R01 NS116357 |
PMID:35642786 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/minian/ | SCR_022601 | 2026-02-17 10:04:22 | 4 | |||||||
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nTracer Resource Report Resource Website |
nTracer (RRID:SCR_023032) | image processing software, software application, data processing software, software resource | Software tool as plug-in for ImageJ software. Used for tracing microscopic images. | tracing microscopic images | is a plug in for: ImageJ | Michigan miBRAIN initiative ; NIAID R01AI130303; NSF NSF-1707316; NIMH R01MH110932; NIGMS F31GM116517; NINDS R01NS095367; NIMH P50MH09427; NIH Office of the Director DP2OD006514; NINDS R01NS076467; NINDS U01NS090449; NIGMS P41GM10371; Multidisciplinary University Research Initiative Army Research Office |
PMID:30715234 | Free, Available for download, Freely available | SCR_023032 | 2026-02-17 10:04:29 | 0 | ||||||||
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FastProject Resource Report Resource Website |
FastProject (RRID:SCR_017462) | software application, data processing software, data analysis software, software resource, data visualization software | Software Python tool for low dimensional analysis of single-cell RNA-Seq data. Software package for two dimensional visualization of single cell data. Analyzes gene expression matrix and produces output report in which two-dimensional of data can be explored. | Two, dimensional, data, reduction, single, cell, RNA seq, visualization, gene, expression, matrix, report, explore, BRAIN Initiative, bio.tools |
is recommended by: BRAIN Initiative is listed by: OMICtools is listed by: Debian is listed by: bio.tools is related to: University of California at Berkeley; Berkeley; USA |
National Institutes of Health NRSA Trainee appointment ; California Research Alliance by BASF ; NIMH U01 MH105979; NHGRI U01 HG007910 |
PMID:27553427 | Free, Available for download, Freely available | biotools:fastproject | https://bio.tools/fastproject | SCR_017462 | 2026-02-17 10:02:52 | 0 | ||||||
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JWatcher Resource Report Resource Website 10+ mentions |
JWatcher (RRID:SCR_017595) | software application, data processing software, data analytics software, data analysis software, data acquisition software, software resource | Software Java tool for quantitative analysis of behavior. Used to address any theoretical problem that requires complex sequence of actions to be scored by human observer. Runs on microcomputer providing Java Virtual Machine[TM] and has been tested on Windows[TM] and Macintosh[TM] systems. Legacy version (version 0.9) works on older systems (Macintosh OS-9 and Windows-98), while Version 1.0 works well on Macintosh OS-X and Windows XP systems. JWatcher Video works best on Windows XP systems and has reduced functionality running in Macintosh OS-X. JWatcher-Palm can be used to acquire data on Palm OS[TM] equipped device and analyze it on your main computer. | Quantitative, analysis, behavior, theoretical, problem, action, scored, human, observer |
has parent organization: University of California at Los Angeles; California; USA has parent organization: Macquarie University; Sydney; Australia |
NIMH R21 MH065226; Australian Research Council ; Macquarie University |
Free, Available for download, Freely available | SCR_017595 | 2026-02-17 10:03:36 | 49 | |||||||||
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clusterExperiment Resource Report Resource Website |
clusterExperiment (RRID:SCR_017439) | software application, data processing software, data analysis software, software resource, data visualization software | Software open source R package for executing, evaluating and visualizing different clusterings of experimental data, including data from single cell RNA-Seq studies. Software for running and comparing different clusterings of single cell sequencing data. | Executing, evaluating, visualizing, clustering, experimental, data, single, cell, RNAseq, sequencing, gene, expression, BRAIN Initiative | is recommended by: BRAIN Initiative | NIMH U19 MH114830; NIMH U01 MH105979; Chan Zuckerberg Initiative ; ENS-CFM Data Science Chair |
PMID:30180157 | Free, Available for download, Freely available | SCR_017439 | 2026-02-17 10:03:35 | 0 | ||||||||
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microMS Resource Report Resource Website 1+ mentions |
microMS (RRID:SCR_017443) | software application, image processing software, data processing software, software resource, image analysis software | Software Python platform for image guided Mass Spectrometry profiling. Provides graphical user interface for automatic cell finding and point based registration from whole slide images. Simplifies single cell analysis with feature rich image processing. | Image, guided, mass, spectrometry, automatic, cell, finding, point, based, registration, whole, slide, image, analysis, processing, BRAIN Initiative |
is recommended by: BRAIN Initiative has parent organization: University of Illinois at Urbana-Champaign; Illinois; USA |
NIDA DA018310; NIMH U01 MH109062; National Science Foundation Graduate Research Fellowship Program ; Springborn Fellowship ; NIGMS T32 GM070421 |
PMID:28593377 | Free, Available for download, Freely available | SCR_017443 | microscopy guided Mass Spectrometry | 2026-02-17 10:02:52 | 1 |
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