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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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WUSTL NNIN - Nano Research Facility Resource Report Resource Website |
WUSTL NNIN - Nano Research Facility (RRID:SCR_012674) | WUSTL NNIN - NRF, WUSTL NRF | service resource, access service resource, core facility | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 15,2024. Nano Research Facility (NRF) at Washington University in St. Louis is a NNIN nodal facility supported by the National Science Foundation. It cultivates an open, shared research, and education environment that brings researchers across disciplines together, particularly in the emerging area of nanomaterials with applications in the energy, environment, and biomedical fields. The mission is to be a resource to the scientific and technical community for the advancement of nanoscience and nanotechnology in a safe and environmentally benign manner. NRF includes a micro- and nano-fabrication lab (clean room), surface characterization lab, particle technology lab, and imaging lab with a focus on bio-imaging. NRF provides unique technical expertise in: Knowledge-based synthesis of nanostructured materials Particle instrumentation tools for toxicity studies Non-invasive imaging modalities for biological applications Clean Energy Applications Energy and Environmental nanotechology Environmental Health and Safety As a member of the National Nanotechnology Infrastructure Network (NNIN), supported by the National Science Foundation, NRF is available to both academic and industrial users nation-wide and across the globe. |
is listed by: ScienceExchange has parent organization: Washington University in St. Louis; Missouri; USA |
NSF | THIS RESOURCE IS NO LONGER IN SERVICE | SciEx_8808 | SCR_012674 | Washington University in St. Louis National Nanotechnology Infrastructure Network - Nano Research Facility, Washington University in St. Louis NNIN - Nano Research Facility | 2026-02-17 10:02:15 | 0 | |||||||
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SpikeHunter Resource Report Resource Website 1+ mentions |
SpikeHunter (RRID:SCR_024831) | software application, data processing software, data analysis software, software resource, sequence analysis software | Software deep learning tool for identifying phage tailspike proteins. Used to identify phage tailspike proteins. | identifying phage tailspike proteins, phage tailspike protein, deplolymerase, right-handed beta-helix, | NLM ; NSF |
PMID:37503040 | Free, Available for download, Freely available | SCR_024831 | 2026-02-17 10:04:53 | 1 | |||||||||
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Guided Sparse Factor Analysis Resource Report Resource Website 1+ mentions |
Guided Sparse Factor Analysis (RRID:SCR_025023) | GSFA | software resource, software toolkit | Software R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single cell CRISPR screening data. | sparse factor analysis, differential gene expression, discovery simultaneously, single cell CRISPR screening data, | NIMH R01MH110531; NHGRI R01HG010773; NIMH R01MH116281; NIGMS R01 GM126553; NHGRI R01 HG011883; NSF ; Sloan Research Fellowship |
PMID:37770710 | Free, Available for download, Freely available | SCR_025023 | 2026-02-17 10:04:50 | 1 | ||||||||
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PyContact Resource Report Resource Website 1+ mentions |
PyContact (RRID:SCR_025066) | data analysis software, software application, data processing software, software resource | Software tool for analysis of non-covalent interactions in molecular dynamics trajectories. Implemented in Python and is universally applicable to any kind of MD trajectory supported by MDAnalysis package. | non-covalent interactions, molecular dynamics trajectories, | is related to: MDAnalysis | German Research Foundation ; NIGMS P41 GM104601; NSF |
PMID:29414703 | Free, Available for download, Freely available, | https://github.com/maxscheurer/pycontact | SCR_025066 | 2026-02-17 10:04:48 | 3 | |||||||
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Natural Products Atlas Resource Report Resource Website 10+ mentions |
Natural Products Atlas (RRID:SCR_025107) | NP Atlas | data or information resource, atlas, knowledge base | Open access knowledge base for microbial natural products discovery. Database of microbially derived natural product structures. Provides coverage of bacterial and fungal natural products to visualize chemical diversity. Includes compounds and contains referenced data for structure, compound names, source organisms, isolation references, total syntheses, and instances of structural reassignment. Interactive web portal permits searching by structure, substructure, and physical properties. Provides mechanisms for visualizing natural products chemical space and dashboards for displaying author and discovery timeline data. Atlas has been developed under FAIR principles. | FAIR principles, microbial natural products discovery, natural product structures, bacterial and fungal natural products, visualize chemical diversity, | has parent organization: Simon Fraser University; British Columbia; Canada | NSERC Discovery ; NCCIH U41 AT008718; NIGMS R01 GM125943; NCCIH F31 AT010098; NCI F31 CA236237; NCCIH T32 AT007533; NIH D43 TW010530; NSF ; BBSRC ; Carnegie Trust for the Universities of Scotland ; Netherlands eScience Center ; Sao Paulo Research Foundation ; NCCIH AT008718; NIGMS GM124461; Natural Sciences and Engineering Research Council of Canada ; Ministry of Science ; Technology and Telecommunications of Costa Rica |
PMID:31807684 DOI:10.1093/nar/gkab941 |
Free, Freely available, | SCR_025107 | , The Natural Products Atlas, The Natural Products Atlas 2.0 | 2026-02-17 10:04:52 | 19 | ||||||
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MatrixEQTL Resource Report Resource Website 50+ mentions |
MatrixEQTL (RRID:SCR_025513) | data analysis software, software application, data processing software, software resource | Software tool for ultra fast eQTL analysis via large matrix operations. | expression Quantitative Trait Loci, fast eQTL analysis, large matrix operations, | NIMH R01 MH090936; NIEHS R01 ES015241; US Environmental Protection Agency ; NCI R01 CA138255; NSF ; Gillings Innovation Laboratory in Statistical Genomics |
PMID:22492648 | Free, Freely available, | SCR_025513 | Matrix Expression Quantitative Trait Loci | 2026-02-17 10:04:59 | 69 | ||||||||
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SomaticSignatures Resource Report Resource Website 1+ mentions |
SomaticSignatures (RRID:SCR_025620) | source code, software resource, software toolkit | Software R package for identifying mutational signatures of single nucleotide variants (SNVs) from high-throughput experiments. | R, identifying mutational signatures, single nucleotide variants, high-throughput experiments, | NSF | PMID:26163694 | Free, Available for download, Freely available, | https://github.com/juliangehring/SomaticSignatures | SCR_025620 | 2026-02-17 10:04:23 | 4 | ||||||||
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MorphoSource Resource Report Resource Website 10+ mentions |
MorphoSource (RRID:SCR_025654) | data or information resource, database | Publicly accessible 3D data repository where subject experts, educators, and general public can find, view, interact with, and download 3D and 2D media representing physical objects important to the world’s natural history, cultural heritage, and scientific collections. Media data are contributed by a community that includes museums, institutions, researchers, scholars, and other subject experts who use MorphoSource to archive data, share findings, and increase scholarly impact. Contributed media represent both biological objects such as fossils and representatives of living species, as well as artifacts and objects created by humans that are critical to our shared cultural heritage. | 3D media, 2D media, physical objects, natural history, cultural heritage, scientific collections, shared cultural heritage, | NSF ; Duke University |
Free, Freely available, | r3d100012224 | https://github.com/MorphoSource https://doi.org/10.17616/R35Q0K |
SCR_025654 | 2026-02-17 10:04:23 | 48 | ||||||||
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National High Magnetic Field Laboratory High B/T Core Facility Resource Report Resource Website |
National High Magnetic Field Laboratory High B/T Core Facility (RRID:SCR_017360) | B/T | service resource, access service resource, core facility | Facility to conduct experiments in high magnetic fields up to 15 tesla and at very low temperatures down to 0.4 mK simultaneously. Located at University of Florida in Gainesville, it is operated as part of Physics Department Microkelvin Laboratory. | Magnetic, field, temperature | is related to: University of Florida; Florida; USA | NSF DMR-1644779; Florida State ; NIH ; Department of Energy ; Department of Defense |
Restricted | SCR_017360 | NHMF Laboratory High B/T Facility, High B/T (magnetic field / temperature) Facility, High B/T Facility | 2026-02-17 10:03:13 | 0 | |||||||
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National High Magnetic Field Laboratory Advanced Magnetic Resonance Imaging and Spectroscopy Core Facility Resource Report Resource Website 500+ mentions |
National High Magnetic Field Laboratory Advanced Magnetic Resonance Imaging and Spectroscopy Core Facility (RRID:SCR_017362) | National MagLab NMR, MagLab NMR-MRI/s, | service resource, access service resource, core facility | Facility offers array of solid state, solution state, MRI/S (animal and human), MR microscopy and diffusion capabilities and techniques. Among their machines is 900 MHz 105 mm bore magnet. Techniques and instruments are available at two different MagLab facilities in Florida, NMR-MRI/S Facility at MagLab headquarters near Florida State University in Tallahassee and Advanced Magnetic Resonance Imaging and Spectroscopy Facility (AMRIS) housed within McKnight Brain Institute at University of Florida in Gainesville. | Nuclear Magnetic Resonance, Magnetic Resonance Imaging, Magnetic Resonance Imaging/ Spectroscopy, spectrometer, scanner, bore, magnet | is related to: University of Florida; Florida; USA | Florida State ; Department of Defense ; Department of Energy ; NSF DMR-1644779; NSF DMR-2128556; NSF DMR-1157490 |
Restricted | SCR_017363 | https://amris.mbi.ufl.edu/ https://nationalmaglab.org/user-facilities/nmr-mri |
SCR_017362 | , Nuclear Magnetic Resonance and Magnetic Resonance Imaging / Spectroscopy Facility, Advanced Magnetic Resonance Imaging and Spectroscopy Facility, NMR Facility, National High Magnetic Field NMR-MRI/S Core Facility, Advanced Magnetic Resonance Imaging and Spectroscopy | 2026-02-17 10:02:51 | 859 | |||||
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University of Delaware BioImaging Center Core Facility Resource Report Resource Website 1+ mentions |
University of Delaware BioImaging Center Core Facility (RRID:SCR_017814) | service resource, access service resource, core facility | Microscopy facility that houses equipment including confocal microscopes: LSM780 confocal microscope (Located at CBBI),LSM880 confocal microscope (Located at DBI 117),electron microscopes and their accessory instrumentation:Thermo Scientific Apreo VS SEM microscope,Hitachi S-4700, Leica EM ACE600 and Tousimis Autosamdri-815B,CX7 high content analysis system. Our staff has technical expertise across different microscopy platforms and methodologies. | Microscopy, bioimaging, confocal, electron, microscope, analysis, service, core |
is listed by: ABRF CoreMarketplace has parent organization: University of Delaware; Delaware; USA |
NIGMS P20 GM103446; NSF IIA 1301765; State of Delaware ; NCRR S10 RR027273; NIH Office of the Director S10 OD016361; NIH Office of the Director S10 OD025165; NIGMS P20 GM113125 |
Open | ABRF_537 | https://coremarketplace.org/?FacilityID=537&citation=1 | SCR_017814 | Delaware University BioImaging Center Core Facility, University of Delaware Bio-Imaging Center | 2026-02-17 10:03:40 | 1 | ||||||
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Delaware University Surface Analysis Core Facility Resource Report Resource Website |
Delaware University Surface Analysis Core Facility (RRID:SCR_017796) | service resource, access service resource, core facility | Core provides consulting and services in X-ray Photoelectron Spectroscopy (XPS or ESCA), Time-of-Flight Secondary-Ion Mass Spectrometry (TOF-SIMS), X-ray Photoelectron Imaging, Auger Electron Spectroscopy (AES), Scanning Auger Microscopy or Imaging (SAM), Secondary-Electron Microscopy (SEM), Ion-Scattering Spectroscopy (ISS or LEIS), Scanning Probe Microscopy (STM and AFM). | Surface, analysis, X-ray, photoelectron, spectroscopy, ion, mass, spectrometry, imaging, Auger, microscopy, scattering, scanning, probe, service, core | NSF | Open | ABRF_439 | SCR_017796 | Surface Analysis Facility | 2026-02-17 10:03:39 | 0 | ||||||||
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Northwestern University Central Laboratory for Materials Mechanical Properties Core Facility Resource Report Resource Website 1+ mentions |
Northwestern University Central Laboratory for Materials Mechanical Properties Core Facility (RRID:SCR_017877) | CLaMMP | service resource, access service resource, core facility | Core provides mechanical testing machines and accessories for conducting educational, research, and outreach experiments on most solid materials. | Material, mechanical, property, testing, solid, service, core, ABRF | is listed by: ABRF CoreMarketplace | NSF DMR 1720139 | Open | ABRF_727 | SCR_017877 | Central Laboratory for Materials Mechanical Properties | 2026-02-17 10:03:41 | 3 | ||||||
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University of California at Berkeley Cancer Research Laboratory Molecular Imaging Center Core Facility Resource Report Resource Website 50+ mentions |
University of California at Berkeley Cancer Research Laboratory Molecular Imaging Center Core Facility (RRID:SCR_017852) | MIC | service resource, access service resource, core facility | Microscopy core specializing in laser based fluorescence techniques. Offers training and expertise in 20 different microscope systems, including live cell and in vivo imaging, laser scanning (LSM) and spinning disk (SDC) confocal, multi-photon (2p), fluorescent lifetime imaging (FLIM), light-sheet microscopy (SPIM), super resolution (Airyscan), slide scanning and patterned illumination for optogenetic manipulation and readout. Provides offline computer analysis workstations for image processing, visualization and analysis, including GPU workstations. MIC operates in 3 different buildings on campus, with primary locations in Life Sciences Addition (LSA), North-side core in Barker Hall, and small outpost in Li Ka Shing Center for Biomedical and Health Sciences (LKS).Provides equipment in categories:Confocal and multi photon laser scanning microscopes,Spinning disk confocal microscopes,Lightsheet (SPIM) microscopes,Epifluorescence/widefield scopes and Computer workstations. | Molecular, imaging, microscopy, system, laser, based, fluorescent, technique, live, cell, in vivo, slide, scanning, image, processing, visualization, analysis, service, core | Helen Wills Neuroscience Institute ; NSF DBI1041078; Gordon and Betty Moore Foundation ; NCRR S10 RR028971; Biological Faculty Research Fund ; Fidelity Foundation Award ; NCRR S10 RR027696; NEI R01 EY015514; NSF DBI 0116016 |
Open | ABRF_659 | SCR_017852 | CRL Molecular Imaging Center | 2026-02-17 10:02:58 | 64 | |||||||
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Donald Danforth Plant Science Center Advanced Bioimaging Laboratory Core Facility Resource Report Resource Website 10+ mentions |
Donald Danforth Plant Science Center Advanced Bioimaging Laboratory Core Facility (RRID:SCR_018951) | service resource, access service resource, core facility | Core provides instruments for live cell imaging including Leica SP8-X confocal microscope and other fluorescence microscopes. Facility provides workstation for confocal image processing, ancillary equipment required for transmission electron microscopy. Services are provided as self services after user training by IMF staff or as full services done by core facility staff. | Live cell imaging, Leica SP8-X, confocal microscope, flulorescent microscope, confocal image processing, transmission electron microscopy, ABRF, ABRF |
is listed by: ABRF CoreMarketplace has parent organization: Donald Danforth Plant Science Center |
NSF ; NIH |
ABRF_1026 | https://www.scienceexchange.com/labs/advanced-bioimaging-laboratory https://coremarketplace.org/?FacilityID=1026 |
SCR_018951 | Advanced Bioimaging Laboratory, Donald Danforth Plant Science Center Integrated Microscopy Facility | 2026-02-17 10:03:50 | 20 | |||||||
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University of Colorado Boulder High Performance Computing PetaLibrary Core Facility Resource Report Resource Website 10+ mentions |
University of Colorado Boulder High Performance Computing PetaLibrary Core Facility (RRID:SCR_019299) | PetaLibrary | service resource, access service resource, core facility | Provides service to support storage, archival, and sharing of research data. Available at subsidized cost to any researcher affiliated with University of Colorado Boulder. | USEDit, ABRF, research data support storage, research data archival, research data sharing |
is listed by: ABRF CoreMarketplace is related to: USEDit has parent organization: University of Colorado Boulder; Colorado; USA |
NSF ACI-1532235; NSF ACI-1532236 |
Restricted | ABRF_1097 | https://coremarketplace.org/?FacilityID=1097 | SCR_019299 | Colorado University at Boulder High Performance Computing PetaLibrary Core Facility, High Performance Computing - CU PetaLibrary, University of Colorado at Boulder High Performance Computing PetaLibrary Core Facility | 2026-02-17 10:03:40 | 22 | |||||
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Conos Resource Report Resource Website 1+ mentions |
Conos (RRID:SCR_026381) | source code, software resource, software toolkit | Software R package for joint analysis of multiple single-cell RNA-seq datasets. Used to wire together large collections of single-cell RNA-seq datasets, which allows for both identification of recurrent cell clusters and propagation of information between datasets in multi-sample or atlas-scale collections. | joint analysis of multiple single-cell RNA-seq datasets, multiple single-cell RNA-seq datasets, identification of recurrent cell clusters, propagation of information between datasets, multi-sample, atlas-scale collections, | NHLBI R01HL131768; NSF ; Zimin Foundation |
DOI:10.1038/s41592-019-0466-z | Free, Available for download, Freely available | SCR_026381 | 2026-02-17 10:05:05 | 6 | |||||||||
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MeTPeak Resource Report Resource Website 10+ mentions |
MeTPeak (RRID:SCR_026533) | source code, software resource, software toolkit | Software package for finding the location of m6A sites in MeRIP-seq data. | finding location of m6A sites, MeRIP-seq data | NCI P30CA54174; NCI U54 CA113001; NIGMS R01 GM113245; Natural Science Foundation of China ; NSF |
PMID:27307641 | Free, Available for download, Freely available | SCR_026533 | 2026-02-17 10:05:06 | 10 | |||||||||
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FARDEEP Resource Report Resource Website |
FARDEEP (RRID:SCR_026704) | FARDEEP | software application, source code, software resource | Software R tool for enumerating immune cell subsets from whole tumor tissue samples. Utilizes adaptive least trimmed square to automatically detect and remove outliers before estimating cell compositions. | enumerating immune cell subsets, whole tumor tissue samples, estimating cell compositions, | NIDCR R03 DE027399; NIDCR R01 DE026728; NIDCR R00 DE024173; NIDCR F31 DE028740; NSF ; Michigan State University STEM Gateway Fellowship ; University of Michigan Rogel Cancer Center Research Grant |
PMID:31059559 | Free, Available for download, Freely available | SCR_026704 | Fast And Robust DEconvolution of Expression Profiles | 2026-02-17 10:05:07 | 0 | |||||||
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T-REX Resource Report Resource Website 100+ mentions |
T-REX (RRID:SCR_010715) | T-REX | data analysis service, production service resource, analysis service resource, service resource | T-REX is a free, platform-independent online tool that allows for an integrated, rapid, and more robust analysis of T-RFLP data. Despite increasing popularity and improvements in terminal restriction fragment length polymorphism (T-RFLP) and other microbial community fingerprinting techniques, there are still numerous obstacles that hamper the analysis of these datasets. Many steps are required to process raw data into a format ready for analysis and interpretation. These steps can be time-intensive, error-prone, and can introduce unwanted variability into the analysis. Accordingly, we developed T-REX, free, online software for the processing and analysis of T-RFLP data. Analysis of T-RFLP data generated from a multiple-factorial study was performed with T-REX. With this software, we were able to i) label raw data with attributes related to the experimental design of the samples, ii) determine a baseline threshold for identification of true peaks over noise, iii) align terminal restriction fragments (T-RFs) in all samples (i.e., bin T-RFs), iv) construct a two-way data matrix from labeled data and process the matrix in a variety of ways, v) produce several measures of data matrix complexity, including the distribution of variance between main and interaction effects and sample heterogeneity, and vi) analyze a data matrix with the additive main effects and multiplicative interaction (AMMI) model. | has parent organization: Cornell University; New York; USA | Microsoft Corporation ; NSF DGE 0221658 |
PMID:19500385 | nlx_89468 | SCR_010715 | T-REX (T-RFLP analysis EXpedited), T-REX: Software for the processing and analysis of T-RFLP data, T-RFLP analysis EXpedited | 2026-02-17 10:01:51 | 119 |
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