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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Comparative Toxicogenomics Database (CTD) Resource Report Resource Website 1000+ mentions |
Comparative Toxicogenomics Database (CTD) (RRID:SCR_006530) | CTD | data analysis service, analysis service resource, data or information resource, production service resource, service resource, database | A public database that enhances understanding of the effects of environmental chemicals on human health. Integrated GO data and a GO browser add functionality to CTD by allowing users to understand biological functions, processes and cellular locations that are the targets of chemical exposures. CTD includes curated data describing cross-species chemical–gene/protein interactions, chemical–disease and gene–disease associations to illuminate molecular mechanisms underlying variable susceptibility and environmentally influenced diseases. These data will also provide insights into complex chemical–gene and protein interaction networks. | environment, chemical, disease, gene, pathway, protein, interaction, animal model, ontology, annotation, toxin, ontology or annotation browser, FASEB list |
is used by: DisGeNET is used by: NIF Data Federation is listed by: 3DVC is listed by: Gene Ontology Tools is related to: PharmGKB Ontology is related to: Gene Ontology is related to: BioRAT is related to: Integrated Gene-Disease Interaction is related to: OMICtools is related to: Integrated Manually Extracted Annotation has parent organization: Mount Desert Island Biological Laboratory has parent organization: North Carolina State University; North Carolina; USA is parent organization of: Interaction Ontology |
Pfizer ; American Chemistry Council ; NIEHS ES014065; NIEHS R01 ES019604; NCRR P20 RR016463; NIEHS U24 ES033155 |
PMID:16902965 PMID:16675512 PMID:14735110 PMID:12760826 |
Free, Freely available | OMICS_01578, nif-0000-02683, r3d100011530 | http://ctd.mdibl.org https://doi.org/10.17616/R3KS7N |
SCR_006530 | CTD - Comparative Toxicogenomics Database | 2026-02-13 10:55:51 | 1188 | ||||
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National Center for Research Resources - Primate Resources Resource Report Resource Website 1+ mentions |
National Center for Research Resources - Primate Resources (RRID:SCR_006863) | NCRR Primate Resources | biomaterial supply resource, organism supplier, material resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on October 16, 2013. NCRR has been absorbed into other parts of the National Institutes of Health. This organizational structure is no longer available. Provides laboratory scientists and clinical researchers with the resources and tools they need to understand, detect, treat and prevent a wide range of diseases. Animal models, such as nonhuman primates, are a critical component of biomedical research, having profound implications for public health. Scientists depend on laboratory animals and other nonhuman models for investigating biological processes, studying the causes of diseases and testing promising new therapies. Nonhuman primates, in particular, are important for translational research because of their close physiological similarities to humans. They enable discoveries that have direct application to human studies, bridging the gap between basic science and human medicine. Discoveries in animal models are helping scientists test treatments for human conditions such as drug addiction, obesity, malaria, HIV/AIDS and neurodegenerative diseases, accelerating the pace at which these research advances can be translated into treatments for patients. Through its Division of Comparative Medicine, NCRR offers a wide variety of primate resources for NIH-funded scientists across the nation. Additionally, funding opportunities are available to National Primate Research Centers. Eight National Primate Research Centers (NPRCs) located throughout the country provide animals, facilities and expertise in all aspects of nonhuman primate biology and husbandry. These facilities and resources enable collaborative research among NPRC staff scientists, investigators from the NPRC host institution and other NIH-funded researchers. Major areas of research benefiting from the primate centers include AIDS, avian flu, Alzheimer''s disease, Parkinson''s disease, diabetes, asthma and endo-metriosis. The centers????????????????? specialized resources are intended to support investigators who receive their primary research project funding from NIH, but they also may be used by investigators who are funded by other federal, state and local agencies, as well as by research foundations and the private sector. Together the primate centers have more than 28,000 nonhuman primates of 20 different species. This portal covers the following topics: * National Primate Research Centers * Monkey Research Resources * Chimpanzee Research Resources * Chimpanzee Management Program * Specific-Pathogen-Free Macaque Resources * Nonhuman Primate Research Reagents | grant, animal model, non-human primate, monkey, chimpanzee, reagent |
is listed by: One Mind Biospecimen Bank Listing is parent organization of: Yerkes National Primate Research Center is parent organization of: Washington National Primate Research Center |
NCRR ; NIH Blueprint for Neuroscience Research |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-00495 | http://www.ncrr.nih.gov/comparative_medicine/resource_directory/primates.aspcenters, http://www.ncrr.nih.gov/primates | SCR_006863 | Nonhuman Primate Research Resources | 2026-02-13 10:55:55 | 1 | |||||
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Yale University DNA Analysis on Science Hill Core Facility Resource Report Resource Website 1+ mentions |
Yale University DNA Analysis on Science Hill Core Facility (RRID:SCR_017689) | core facility, access service resource, service resource | Core supports DNA Sequencing of PCR, Plasmid, BAC and Fosmid templates, Fragment Analysis of Microsatellites, AFLP, t-RFLP, SHAPE Experiments and Human Cell Line Authentication. | DNA, sequencing, PCR, plasmid, BAC, Fosmid, template, fragment, analysis, micosatellites, AFLP, tRFLP, human, cell, line, authentication, service, core | NCRR S10 RR025478; NSF Instrumentation Development Grant |
Open | SCR_017711, ABRF_71 | SCR_017689 | DNA Analysis Facility on Science Hill | 2026-02-13 10:58:08 | 1 | ||||||||
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West Virginia University Flow Cytometry and Single Cell Core Facility Resource Report Resource Website 10+ mentions |
West Virginia University Flow Cytometry and Single Cell Core Facility (RRID:SCR_017738) | core facility, access service resource, service resource | Facility provides instrumentation and scientific support for single cell analysis and sorting. Routinely performs analysis of both eukaryotic and prokaryotic cells for expression of intracellular and extracellular proteins, cell cycle, cell proliferation, cytokine production, and cell sorting based on expression of cell surface antigen(s) and/or expression of genetically engineered intercellular fluorescent proteins. | Single, cell, analysis, sorting, flow, cytometry, West Virginia, service, core | NCRR RR020866; NIGMS P30 GM103488; NIGMS P20 GM103434; NIGMS U54 GM104942; NIGMS U51 GM104942; NIH Office of the Director S10 OD016165; NIGMS P20 GM109098 |
Open | ABRF_221 | SCR_017738 | FCSCCF, WVU Flow Cytometry and Single Cell Core Facility | 2026-02-13 10:58:03 | 14 | ||||||||
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Stanford University Shared FACS Core Facility Resource Report Resource Website 10+ mentions |
Stanford University Shared FACS Core Facility (RRID:SCR_017788) | core facility, access service resource, service resource | Provides flow cytometry instrumentation and expertise. Provides operator assisted analyzer and sorter use, as well as training and support for user instrument operation. | Flow, cytometry, instrumentation, analysis, cell, sorting, training, service, core | NCRR S10 RR025518; NCRR S10 RR027431; NIH Office of the Director S10 OD016318; Parker Institute for Cancer Immunotherapy |
Open | ABRF_398 | SCR_017788 | Stanford Shared FACS Facility | 2026-02-13 10:58:04 | 16 | ||||||||
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University of Wisconsin-Madison Chemistry Instrumentation Center - Mass Spectrometry Core Facility Resource Report Resource Website |
University of Wisconsin-Madison Chemistry Instrumentation Center - Mass Spectrometry Core Facility (RRID:SCR_017931) | core facility, access service resource, service resource | Core provides mass spectrometers including Thermo Q Exactive Plus,Bruker impact II ,Bruker microflex LRF,Bruker ULTRAFLEX III,Shimadzu GCMS-QP2010S,Waters Acquity LCMS. | Instrumentation, mass, spectrometry, service, core, ABRF | is listed by: ABRF CoreMarketplace | NIH Office of the Director S10 OD020022; NCRR S10 RR024601; NSF |
Restricted | ABRF_809 | SCR_017931 | Mass Spectrometry Facility | 2026-02-13 10:58:05 | 0 | |||||||
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Brown University Division of Biology and Medicine Proteomics Shared Resource Core Facility Resource Report Resource Website |
Brown University Division of Biology and Medicine Proteomics Shared Resource Core Facility (RRID:SCR_017910) | core facility, access service resource, service resource | Core provides instrumentation and proteomics expertise to Brown University and Rhode Island-EPSCoR scientific communities and training in emerging proteomic techniques. Mass Spectrometry proteomics resources and services are provided by COBRE Center for Cancer Research Development (CCRD) at Rhode Island Hospital: Proteomics Core. | Proteomics, instrumentation, expertise, technique, training, mass, spectrometry, service, core, ABRF | is listed by: ABRF CoreMarketplace | EPSCoR Grant ; NCRR S10 RR020923; NCRR S10 RR027027 |
Restricted | ABRF_791 | SCR_017910 | NSF/EPSCoR Proteomics Shared Resource Facility | 2026-02-13 10:58:04 | 0 | |||||||
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New York University School of Medicine Langone Health Microscopy Laboratory Core Facility Resource Report Resource Website 100+ mentions |
New York University School of Medicine Langone Health Microscopy Laboratory Core Facility (RRID:SCR_017934) | core facility, access service resource, service resource | Core offers comprehensive light and electron microscopy technologies. Our scientists use light microscopes and electron microscopes at resolutions ranging from centimeters to angstroms, providing clear and detailed images.We assist at every stage of your experiment, offering research-design consultation and instrument training, as well as guidance in study execution, analysis, and presentation for publication. | Microscopy, light, electron, image, training, experiment, consultation, analysis, service, core, ABRF, USEDit |
is listed by: ABRF CoreMarketplace is related to: USEDit has parent organization: New York University School of Medicine; New York; USA |
NCI CA016087; NCRR RR023704; NCRR RR024708; NIH Office of the Director OD019974; NIH A1080192 |
Open | ABRF_366 | https://coremarketplace.org/?FacilityID=366 | SCR_017934 | NYU Langone Microscopy Laboratory | 2026-02-13 10:58:07 | 125 | ||||||
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FMRIB’s Integrated Registration and Segmentation Tool Resource Report Resource Website 1+ mentions |
FMRIB’s Integrated Registration and Segmentation Tool (RRID:SCR_024921) | FIRST | registration software, data processing software, data analysis software, software application, segmentation software, software resource, image analysis software | Software model based segmentation and registration tool. Used for segmentation of sub-cortical structures. Introduces basic segmentation and vertex analysis for detecting group differences. | Functional Magnetic Resonance Imaging of the Brain, segmentation, registration, volumetric segmentation, performing vertex analysis, |
is related to: Multimodal Image Segmentation Tool is a plug in for: FSL |
NCRR P41 RR14075; NINDS R01 NS052585; NCRR R01 RR16594; NIMH K08 MH01573; NIMH K01 MH01798; NIDA R01 DA017905 |
PMID:21352927 | Free, Freely available | SCR_024921 | , Functional Magnetic Resonance Imaging of the Brain's Integrated Registration and Segmentation Tool | 2026-02-13 10:59:19 | 2 | ||||||
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LONI De-identification Debablet Resource Report Resource Website |
LONI De-identification Debablet (RRID:SCR_009593) | LONI De-identification Debablet | software resource, software application | Software application for removing patient-identifying information from medical image files. Removing this information is often necessary for enabling investigators to share image files in a HIPAA compliant manner. | analyze, console (text based), dicom, java, minc, magnetic resonance, nifti, os independent, win32 (ms windows), workflow |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Laboratory of Neuro Imaging |
NIBIB 9P41EB015922-15; NCRR 2-P41-RR-013642-15 |
LONI Software License | nlx_155784 | http://www.nitrc.org/projects/did | http://www.loni.ucla.edu/Software/Software_Detail.jsp?software_id=23 | SCR_009593 | 2026-02-13 10:56:27 | 0 | |||||
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BioMesh3D Resource Report Resource Website 1+ mentions |
BioMesh3D (RRID:SCR_009534) | BioMesh3D | software resource, software application | A free, easy to use program for generating quality meshes for use in biological simulations. It is currently integrated with SCIRun and uses the SCIRun system to visualize the intermediate results. The BioMesh3D program uses a particle system to distribute nodes on the separating surfaces that separate the different materials and then uses the TetGen software package to generate a full tetrahedral mesh. | mesh, simulation |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: SCIRun is related to: SCIRun has parent organization: University of Utah; Utah; USA |
NCRR 5P41RR012553-15; NIGMS 8 P41 GM103545-15 |
PMID:23367171 | MIT License | nlx_155708 | http://www.nitrc.org/projects/biomesh3d | SCR_009534 | 2026-02-13 10:56:26 | 3 | |||||
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ResearchIQ Resource Report Resource Website |
ResearchIQ (RRID:SCR_014304) | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVICE, documented March 14, 2016. Research Integrative Query (ResearchIQ) tool, a semantically anchored resource discovery platform that facilitates semantic discovery of local and publicly available data through a single web portal designed for researchers in the biomedical informatics domain within The Ohio State University. | Platform, Semantic information | has parent organization: Ohio State University; Ohio; USA | NCRR UL1-RR025755 | PMID:26306248 | THIS RESOURCE IS NO LONGER IN SERVICE | http://researchiq.bmi.osumc.edu:8080/#riqview | SCR_014304 | 2026-02-13 10:57:15 | 0 | |||||||
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Eagle Resource Report Resource Website 50+ mentions |
Eagle (RRID:SCR_015991) | software resource, software toolkit | Software package for statistical estimation of haplotype phase either within a genotyped cohort or using a phased reference panel in large scale sequencing. The package includes Eagle1 (to harness identity-by-descent among distant relatives to rapidly call phase using a fast scoring approach) and Eagle2 (to analyze a full probabilistic model similar to the diploid Li-Stephens model used by previous HMM-based methods. | hmm, hidden markov model, statistic, estimation, haplotype, phase, reference, panel, sequencing, algorithm, analysis, probability |
is listed by: Debian is listed by: OMICtools has parent organization: Broad Institute |
NHGRI R01 HG006399; NIMH R01 MH101244; NHGRI F32HG007805; Wellcome Trust WT098051; Austrian Science Fund J-3401; NHGRI HG007022; NHLBI HL117626; Fannie and John Hertz Foundation ; NCRR S10 RR028832; NWO 480-05-003; Dutch Brain Foundation |
PMID:27694958 PMID:27270109 |
Free, Available for download, Freely available | OMICS_14099, SCR_017262 | https://sources.debian.org/src/bio-eagle/ https://github.com/poruloh/Eagle https://data.broadinstitute.org/alkesgroup/Eagle/downloads/ |
SCR_015991 | Bio-eagle, Eagle1, Eagle2 | 2026-02-13 10:57:39 | 51 | |||||
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Ultrafast Optical Processes Laboratory Resource Report Resource Website 1+ mentions |
Ultrafast Optical Processes Laboratory (RRID:SCR_006582) | Ultrafast Optical Processes Laboratory | biomedical technology research center, service resource, access service resource, training resource | Biomedical technology research center and training resource that develops time-resolved laser technologies and instrumentation, with a focus on 2-D IR spectroscopy. The technologies enable atomic-level measurements of the fastest steps in biological processes to elucidate structure and dynamics in biological macromolecules, assemblies and cells. The Center makes most of its instrumentation available for service research projects to outside users nation-wide. | spectroscopy, structure, dynamics, macromolecule, assembly, cell, optical and laser technology center, laser spectroscopy, biochemical, biophysical, biomedical, laser, biological process | has parent organization: University of Pittsburgh; Pennsylvania; USA | NIGMS 9P41GM104605; NCRR P41RR001348 |
nlx_152664 | SCR_006582 | Laser and Biomedical Technology Laboratories | 2026-02-13 10:55:51 | 1 | |||||||
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NRCAM Resource Report Resource Website 50+ mentions |
NRCAM (RRID:SCR_006134) | NRCAM | biomedical technology research center, service resource, access service resource, training resource | Biomedical technology research center that develops new technologies for modeling cell biological processes. The technologies are integrated through Virtual Cell, a problem-solving environment built on a central database and disseminated as a Web application for the analysis, modeling and simulation of cell biological processes. NRCAM resides at the Center for Cell Analysis and Modeling, CCAM, and provides a vast array of laboratory equipment that can be used for obtaining experimental data needed to create and enhance Virtual Cell models. Microscopy instrumentation includes three confocal laser scanning microscopes including UV excitation, nonlinear optical microscopy utilizing a titanium sapphire pulsed laser, confocal-based fluorescence correlation spectroscopy, wide-field imaging workstation with cooled CCD and rapid excitation filter wheel, and dual-wavelength spectrofluorometer. Access to the facilities and technical staff is open to all researchers., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | modeling, simulation, cell, microscopy, software, biological process, model, cell model, informatics, computing and informatics technology center, FASEB list |
is listed by: 3DVC has parent organization: University of Connecticut; Connecticut; USA is parent organization of: Virtual Cell at the National Resource for Cell Analysis and Modeling |
NIGMS ; NCRR ; NIH Blueprint for Neuroscience Research |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-03953 | SCR_006134 | The National Resource for Cell Analysis and Modeling, National Resource of Cell Analysis and Modeling, National Resource of Cell Analysis and Modeling (NRCAM), National Resource for Cell Analysis and Modeling, National Resource of Cell Analysis & Modeling (NRCAM) | 2026-02-13 10:55:46 | 76 | ||||||
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Colorado University at Boulder EM Services Core Facility Resource Report Resource Website 10+ mentions |
Colorado University at Boulder EM Services Core Facility (RRID:SCR_001432) | core facility, access service resource, service resource, training resource | Core provides access to instruments including:FEI Tecnai 12 Spirit TEM, FEI Tecnai F20 (200kV) FEG-TEM 200kV FEG-TEM,Gatan US4000 4k x 4k CCD, bottom-mount,CryoTEM and electron tomography,High-resolution TEM;FEI Tecnai F20 (200kV) FEG-TEM,300kV FEG-TEM,Gatan US4000 4k x 4k CCD, bottom-mount,CryoTEM and electron tomography,High-resolution TEM,FEI/Phillips CM100 (100kV) TEM,100kV, tungsten TEM,2k x 2k AMT CCD, bottom-mount. | USEDit, electron microscopy, electron tomography, high resolution | has parent organization: University of Colorado; Colorado; USA | NCRR P41 RR000592 | Free, Freely Available | nlx_152656, SCR_018991 | http://bio3d.colorado.edu/, http://mcdb.colorado.edu/facilities/ems/index.shtml, https://www.colorado.edu/sharedinstrumentation/core-facilities/boulder-em-services-core-facility | SCR_001432 | Boulder Lab for 3D Electron Microscopy, Boulder Electron Microscopy Laboratory Core, Colorado University Boulder Electron Microscopy Core Facility, Boulder EM Services Core Facility | 2026-02-13 10:54:51 | 11 | ||||||
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Layton Alzheimers Disease Center Biomarkers and Genetics Core Lab Resource Report Resource Website |
Layton Alzheimers Disease Center Biomarkers and Genetics Core Lab (RRID:SCR_009911) | core facility, access service resource, service resource | In cooperation with the Data and Clinical Cores at the Layton Center, the Biomarkers and Genetics Core generates and maintains biomarker data for select biomarkers which have established roles in the characterization of subjects with or at risk of dementia. Biological markers of brain aging, dementia risk, and neurodegeneration have the potential to accelerate the identification of disease mechanisms and treatment strategies. Biomarkers may include genes, proteins, or other metabolites, and may be identified in DNA, cerebrospinal fluid (CSF), or plasma. Apolipoprotein E (APOE) genotype is generated for all research subjects. Sub-groups of subjects have other types of biomarker data. Many subjects have had genome-wide SNP data generated. In order to foster collaborative research as well as expand resources and expertise, samples (DNA, CSF, and plasma) and data are distributed to qualified investigators worldwide. Most of these researchers are pursuing the causes and modifiers of dementia. Data and samples are collected from well characterized research subjects including the healthy elderly and dementia patients. |
is listed by: Eagle I has parent organization: OHSU Layton Aging and Alzheimer's Disease Center |
Aging | NCRR 5U24RR029825-02 | nlx_156376 | SCR_009911 | Layton Alzheimer''s Disease Center Biomarkers & Genetics Core Lab | 2026-02-13 10:56:34 | 0 | ||||||||
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Layton Alzheimers Disease Center Clinical Core Resource Report Resource Website |
Layton Alzheimers Disease Center Clinical Core (RRID:SCR_009912) | core facility, access service resource, service resource | THIS RESOURCE IS NO LONGER IN SERVICE.Documented on December 6th,2022. The Oregon Alzheimer?s Disease Center?s (OADC) Clinical Core program, directed by Dr. Jeffrey Kaye, performs longitudinal studies of the natural history of brain aging and Alzheimer''s disease in patients and healthy control volunteers. These studies which are performed through standardized neurological, neuro-psychological, and brain-imaging assessments are carried out in the Alzheimer''s Disease and Memory Assessment Clinics as well as through community-based assessments conducted in the homes of study volunteers. The Layton Center Neuroimaging Lab conducts brain-imaging MRI brain scans to assist in diagnosis of brain disease. Typically, MRI images are taken from three different planes. These planes are known as the coronal plane, sagittal plane and the axial plane. Each series of MRI images is named after the plane from which they were obtained. The Clinical Core?s research is focused on preclinical and early Alzheimer?s disease (AD) yet is also poised to participate in other relevant new research as it arises. The OADC Clinical Core recruits, assesses and follows individuals from population groups at high risk for dementia such as: the healthy ?oldest old?, subjects with family history of AD, and subjects with Mild Cognitive Impairment (MCI). Research with underserved populations The Oregon Alzheimer?s Disease Center also maintains two Satellite programs to enhance understanding of underserved populations: The Klamath Exceptional Aging Project (KEAP) is a community-based study of brain aging being conducted in Klamath Falls. The African American Dementia and Aging Project (AADAPt) s a Portland-based cohort of 100 African American seniors. |
is listed by: Eagle I has parent organization: OHSU Layton Aging and Alzheimer's Disease Center |
Aging | NCRR 5U24RR029825-02 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_156377 | SCR_009912 | Layton Alzheimer''s Disease Center Clinical Core | 2026-02-13 10:56:31 | 0 | |||||||
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eXpression2Kinases Resource Report Resource Website 1+ mentions |
eXpression2Kinases (RRID:SCR_016307) | X2K | software resource, software application | Software tool to produce inferred networks of transcription factors, proteins, and kinases predicted to regulate the expression of the inputted gene list by combining transcription factor enrichment analysis, protein-protein interaction network expansion, with kinase enrichment analysis. It provides the results as tables and interactive vector graphic figures. | inferred, network, transcription, factor, protein, kinase, regulate, expression, gene, analysis, combine, bio.tools |
is listed by: Debian is listed by: bio.tools |
NIGMS P50 GM071558; NIDDK R01 DK088541; NLM RC2 LM010994; NIDDK P01 DK056492; NIDDK RC4DK090860; NCRR KL2 RR029885 |
PMID:22080467 | Open source, Free, Freely available, Available for download | biotools:x2k | https://bio.tools/x2k http://www.maayanlab.net/X2K/ |
SCR_016307 | eXpression2Kinases, X2K | 2026-02-13 10:57:40 | 4 | ||||
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SAINTexpress Resource Report Resource Website 10+ mentions |
SAINTexpress (RRID:SCR_018562) | software resource, software toolkit | Software tool for upgraded implementation of probabilistic scoring of affinity purification mass spectrometry data. Used for filtering high confidence interaction data from affinity purification mass spectrometry experiments. Used for assigning confidence scores to protein-protein interactions based on quantitative proteomics data in AP-MS experiments. | Probabilistic scoring, affinity purification, mass spectrometry data, mass spectrometry experiment data, assigning confidence score, protein-protein interaction, quantitative proteomic data | NCRR R01 RR024031; NIGMS R01 GM094231; NCI R01 CA126239 |
PMID:24513533 | Free, Freely available | SCR_018562 | Significance Analysis of INTeractome Express | 2026-02-13 10:58:13 | 13 |
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