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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Transposon Insertion Finder Resource Report Resource Website 1+ mentions |
Transposon Insertion Finder (RRID:SCR_001159) | TIF | software resource | A search program to detect insertions of transposable element from short reads of next generation sequencer. | perl, unix/linux | is listed by: OMICtools | PMID:24629057 | Free, Available for download, Freely available | OMICS_03508 | SCR_001159 | Transposon Insertion Finder | 2026-02-07 02:05:28 | 1 | ||||||
|
Medical College of Wisconsin; Wisconsin; USA Resource Report Resource Website |
Medical College of Wisconsin; Wisconsin; USA (RRID:SCR_001077) | MCW | university | Private and freestanding medical school and graduate school of sciences in Milwaukee, Wisconsin. The institution offers medical degrees as well as masters and PhD-level studies in areas such as biochemistry, cell biology, and community and public health. | private, freestanding, medical, graduate, masters, phd, public health, university |
is related to: Clinical and Translational Science Awards Consortium is parent organization of: Clinical Measurement Ontology is parent organization of: Experimental Conditions Ontology is parent organization of: RatMine is parent organization of: Rat Genome Database (RGD) is parent organization of: Medical College of Wisconsin Cell Biology Neurobiology and Anatomy is parent organization of: National Biomedical Electron Paramagnetic Resonance Center is parent organization of: Cytopathology Foundation is parent organization of: Rat Genome Database: Neurological Disease Portal is parent organization of: Flash Gviewer is parent organization of: Medical College of Wisconsin Mellowes Center for Genomic Sciences and Precision Medicine Core Facility is parent organization of: Medical College of Wisconsin Oxford Instruments Center for Advanced Microscopy Electron Microscopy Core Facility is parent organization of: Medical College of Wisconsin Cancer Center Geospatial, Epidemiology and Outcomes Shared Resource Core Facility is parent organization of: Medical College of Wisconsin Echo Core Shared High-Frequency Ultrasound Imaging Core Facility is parent organization of: Medical College of Wisconsin Tissue Bank is parent organization of: Medical College of Wisconsin Translational Metabolomics Shared Resource Mass Spectrometry Core Facility is parent organization of: Medical College of Wisconsin Cancer Center Structural Biology Shared Resource Core Facility |
, GRID grid.30760.32, ISNI 0000 0001 2111 8460, nlx_30873, Crossref Funder ID 100008980, Wikidata Q6806307 | https://ror.org/00qqv6244 | SCR_001077 | Medical College of Wisconsin | 2026-02-07 02:05:27 | 0 | |||||||
|
North Dakota State University; North Dakota; USA Resource Report Resource Website 1+ mentions |
North Dakota State University; North Dakota; USA (RRID:SCR_001110) | NDSU | university | Public research university in North Dakota, USA. It is a land-grant university that focuses on agriculture and the applied sciences. In addition, it offers undergraduate and graduate degrees in a wide variety of areas including engineering, science and mathematics, health professions, business, and agriculture and food systems studies. | public, research, land grant, agriculture, applied sciences, food systems, health profession |
is parent organization of: NDSU Center for Protease Research is parent organization of: North Dakota State University Labs and Facilities is parent organization of: North Dakota State University School of Pharmacy; North Dakota; USA |
Wikidata:Q2000624, grid.261055.5, nlx_71768, ISNI:0000 0001 2293 4611, Crossref funder ID:100007518 | https://ror.org/05h1bnb22 | SCR_001110 | North Dakota State University | 2026-02-07 02:05:26 | 1 | |||||||
|
University of Oklahoma; Oklahoma; USA Resource Report Resource Website 1+ mentions |
University of Oklahoma; Oklahoma; USA (RRID:SCR_001074) | OU | university | A coeducational public research university located in Oklahoma, USA. The institution confers undergraduate and graduate degrees in fields such as law, medicine, aviation, energy management, history of science, and Native American studies. | public, research, university, undergraduate, graduate |
is parent organization of: Development of a Specific-Pathogen-Free Baboon Colony is parent organization of: University of Oklahoma College of Medicine; Oklahoma; USA is parent organization of: Amblyomma Americanum (Lone Star Tick) cDNA Sequencing is parent organization of: Baboon Research Resouces is parent organization of: Cryptococcus Neoformans cDNA Sequencing is parent organization of: University of Oklahoma Labs and Facilities is parent organization of: University of Oklahoma Health Sciences Center Laboratory for Molecular Biology and Cytometry Research Core Facility is parent organization of: University of Oklahoma Samuel Roberts Nobel Microscopy Laboratory Core Facility is parent organization of: University of Oklahoma Health Sciences Center OK INBRE Data Science Core Facility |
nlx_27458, grid.266900.b, Wikidata:Q640652, ISNI:0000 0004 0447 0018, Crossref funder ID:100007926 | https://ror.org/02aqsxs83 | SCR_001074 | University of Oklahoma | 2026-02-07 02:05:27 | 1 | |||||||
|
University of Adelaide; Adelaide; Australia Resource Report Resource Website 1+ mentions |
University of Adelaide; Adelaide; Australia (RRID:SCR_001075) | university | Public research university in Adelaide, South Australia. It is known for its focus on research and emphasis on moving towards commercialization of research. | public, research, university, adelaide, australia, research, commercialization |
is parent organization of: Neural Network Resources is parent organization of: Centre for Automotive Safety Research |
Wikidata:Q15574, nlx_73637, ISNI:0000 0004 1936 7304, Crossref funder ID:501100001786, grid.1010.0 | https://ror.org/00892tw58 | SCR_001075 | 2026-02-07 02:05:30 | 2 | |||||||||
|
Athens Research and Technology Resource Report Resource Website 1+ mentions |
Athens Research and Technology (RRID:SCR_001079) | commercial organization | Commercial supplier of bioproducts for studies of inflammation, autoimmune disease, cancer, coronary disease, Alzheimer's Disease and more. These include antibodies, enzymes, coagulation factors, and assay kits. | antibody, protein, biotherapeutics, autoimmune disease, cancer, coronary disease, alzheimers disease | inflammation, autoimmune disease, cancer, coronary disease, Alzheimer's Disease | Wikidata: Q30284050, nlx_152285, grid.423006.3 | https://ror.org/0527dhk70 | SCR_001079 | Athens Research and Technology Inc. | 2026-02-07 02:05:26 | 1 | ||||||||
|
Academy Biomedical Company Resource Report Resource Website |
Academy Biomedical Company (RRID:SCR_001108) | commercial organization | Commercial antibody supply company that focuses on providing antibodies for research in cardiovascular and atherosclerosis. | antibody, cardiovascular, athersclerosis, antibody supplier | nlx_152249 | SCR_001108 | Academy Bio-Medical Company, Academy Biomedical Company Inc. | 2026-02-07 02:05:31 | 0 | ||||||||||
|
BreakFusion Resource Report Resource Website 1+ mentions |
BreakFusion (RRID:SCR_001102) | BreakFusion | software resource | Software package written in Perl and C++ that provides a computational pipeline for identifying gene fusions from RNA-seq data. | computational pipeline, gene fusions, rna, sequence, data, perl, c++ |
is listed by: OMICtools has parent organization: University of Texas MD Anderson Cancer Center |
PMID:22563071 DOI:10.1093/bioinformatics/bts272 |
Free, Available for download, Freely available | OMICS_01342 | SCR_001102 | 2026-02-07 02:05:31 | 3 | |||||||
|
Virginia Commonwealth University School of Medicine; Virginia; USA Resource Report Resource Website |
Virginia Commonwealth University School of Medicine; Virginia; USA (RRID:SCR_001061) | VCU SOM | university | Medical school division of Virginia Commonwealth University. | virginia, medical, medicine, commonwealth, medical school, continuing medical education, residency | has parent organization: Virginia Commonwealth University; Virginia; USA | nlx_64661 | SCR_001061 | VCU School of Medicine | 2026-02-07 02:05:26 | 0 | ||||||||
|
U.S. Department of Education Resource Report Resource Website 1+ mentions |
U.S. Department of Education (RRID:SCR_001060) | ED | institution | The United States federal government Department of Education, which oversees policies on federal financial aid for education, collecting data and disseminating research, and working to promote key educational discussions and equal access to education. | education, federal, financial aid, fafsa, government department | is parent organization of: National Institute on Disability and Rehabilitation Research | Available to groups within the United States of America | grid.419881.d, Crossref funder ID: 100000138, Wikidata: Q861556, nlx_143871, ISNI: 0000 0001 2176 2483 | https://ror.org/021adze67 | SCR_001060 | ED.gov, United States Department of Education | 2026-02-07 02:05:30 | 2 | ||||||
|
NPEBseq Resource Report Resource Website 1+ mentions |
NPEBseq (RRID:SCR_001014) | NPEBseq | software resource | A method for non-parametric, empirical Bayesian-based analysis of RNA-seq count data. | rna, rna sequence, seq, empirical, Bayesian, nonparametric | is listed by: OMICtools | PMID:23981227 | OMICS_01312 | http://bioinformatics.wistar.upenn.edu/NPEBseq | SCR_001014 | 2026-02-07 02:05:30 | 1 | |||||||
|
Hytest Resource Report Resource Website 1+ mentions |
Hytest (RRID:SCR_001133) | commercial organization | A commercial antibody supplier that specializes in high-quality monoclonal antibodies and antigens for the diagnostic industry. | antibody, monoclonal, antigen, diagnostic, research and development, r and d | nlx_152378, grid.417767.4, Wikidata: Q5952196 | https://ror.org/031cpdm45 | SCR_001133 | HyTest Ltd. | 2026-02-07 02:05:26 | 5 | |||||||||
|
ASC Resource Report Resource Website 1+ mentions |
ASC (RRID:SCR_001013) | ASC | software resource | Borrows information across sequences to establish prior distribution of sample variation, so that biological variation can be accounted for even when replicates are not available. | sample variation, rna, dna, biology, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian has parent organization: Brown University; Rhode Island; USA |
biotools:sqn, OMICS_01298 | https://bio.tools/sqn | SCR_001013 | 2026-02-07 02:05:27 | 1 | ||||||||
|
BioLegend Resource Report Resource Website 5000+ mentions |
BioLegend (RRID:SCR_001134) | commercial organization | Commercial antibody supplier and developer for biomedical research. These products are compatible with use in flow cytometry and mass cytometry, immunoprecipitation and chip, western blotting, immunofluorescence microscopy, and quantitative multiplexing. | commercial, antibody, reagent, biomedical, research, san diego | nlx_152302 | SCR_001134 | 2026-02-07 02:05:28 | 6616 | |||||||||||
|
NewEast Biosciences Resource Report Resource Website |
NewEast Biosciences (RRID:SCR_001129) | commercial organization | Commercial supplier which provides antibodies, assay kits, biomarkers, and proteins. | antibody, pennsylvania, commercial, assay kit, oncogene | nlx_152421 | SCR_001129 | 2026-02-07 02:05:26 | 0 | |||||||||||
|
University of Utah; Utah; USA Resource Report Resource Website |
University of Utah; Utah; USA (RRID:SCR_001003) | university | Public university in Utah, USA that provides undergraduate, master's, post graduate, graduate, and professional degree programs. | public, university, graduate, post graduate, undergraduate, master's |
is related to: International AMD Genetics Consortium is related to: Clinical and Translational Science Awards Consortium is parent organization of: University of Utah School of Medicine; Utah; USA is parent organization of: ShapeWorks is parent organization of: Pathline is parent organization of: Yandell Lab Portal is parent organization of: University of Utah Labs and Facilities is parent organization of: SLOPE is parent organization of: University of Utah Genetic Science Learning Center - Learn Genetics is parent organization of: Center for Integrative Biomedical Computing is parent organization of: SCIRun is parent organization of: Seg3D is parent organization of: TumorSim is parent organization of: SSU rRNA Modification Database is parent organization of: MMAPPR is parent organization of: MAKER is parent organization of: MAKER Web Annotation Service is parent organization of: Viking Viewer for Connectomics is parent organization of: VisTrails is parent organization of: Mouse Party is parent organization of: Atlases of the Brain is parent organization of: Schmidtea mediterranea Genome Database is parent organization of: Medical Biochemistry Resource is parent organization of: Georgie Project is parent organization of: BioMesh3D is parent organization of: ImageVis3D is parent organization of: map3d is parent organization of: MizBee is parent organization of: GNomEx is parent organization of: University of Utah Microarray and Genomic Analysis Core Facility is parent organization of: University of Utah Flow Cytometry Core Facility is parent organization of: BioPSE is parent organization of: RNA Modification Database is parent organization of: Nornir is parent organization of: ABC (Atlas Based Classification) is parent organization of: DTIProcess ToolKit is parent organization of: SCORE is parent organization of: Neoseg is parent organization of: FluoRender is parent organization of: Ir-tweak is parent organization of: GEMINI is parent organization of: Center for Iron and Heme Disorders at the University of Utah Iron and Heme Core is parent organization of: peddy is parent organization of: ITK-SNAP is parent organization of: University of Utah Cell Imaging Core Facility |
nlx_26775, Wikidata:Q168515, grid.223827.e, ISNI:0000 0001 2193 0096, Crossref funder ID:100007747 | https://ror.org/03r0ha626 | SCR_001003 | University of Utah | 2026-02-07 02:05:27 | 0 | ||||||||
|
Howard University; Washington D.C. Resource Report Resource Website |
Howard University; Washington D.C. (RRID:SCR_001084) | HU | university | A federally chartered, private, coeducational, nonsectarian, historically black university in Washington, D.C. Howard University has graduate schools in many fields, including business, nursing, engineering, and medicine. | undergraduate, graduate, master's, doctoral, phD, institution, university, nonsectarian |
is related to: Clinical and Translational Science Awards Consortium is parent organization of: Howard Flow Cytometry Core is parent organization of: Howard Imaging Core Facility: Molecular Imaging Laboratory is parent organization of: Howard Biobehavioral Core Laboratory is parent organization of: Howard Biostatistics Core is parent organization of: Howard University Center for Computational Biology and Bioinformatics Core Facility is parent organization of: Howard Molecular Genetics Core is parent organization of: Howard Nanoscale Science and Engineering Facility is parent organization of: Howard RCMI Proteomics Facility |
nlx_152178 | SCR_001084 | Howard, Howard University, Howard U | 2026-02-07 02:05:26 | 0 | ||||||||
|
jmzML Resource Report Resource Website 1+ mentions |
jmzML (RRID:SCR_001119) | software resource | A Java application programming interface (API) for the Proteomics Standards Initiative mzML data standard. | standalone software, mac os x, unix/linux, windows, java, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian has parent organization: Google Code |
PMID:20127693 | Free, Available for download, Freely available | biotools:jmzml, OMICS_03340 | https://bio.tools/jmzml | SCR_001119 | 2026-02-07 02:05:26 | 1 | |||||||
|
massiR Resource Report Resource Website |
massiR (RRID:SCR_001157) | software resource | Software that predicts the sex of samples in gene expression microarray datasets. | standalone software, mac os x, unix/linux, windows, r, classification, clustering, gene expression, microarray, quality control, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian has parent organization: Bioconductor |
PMID:24659105 | Free, Available for download, Freely available | biotools:massir, OMICS_03638 | https://bio.tools/massir | SCR_001157 | massiR: MicroArray Sample Sex Identifier, MicroArray Sample Sex Identifier | 2026-02-07 02:05:32 | 0 | ||||||
|
Phoenix Pharmaceuticals Resource Report Resource Website 1000+ mentions |
Phoenix Pharmaceuticals (RRID:SCR_001141) | commercial organization | Commercial antibody supplier that specializes in peptide-related products for research in obesity, cardiovascular disease, and diabetes. | antibody, peptide, obesity, cardiovascular, diabetes, commercial, biomaterial supply resource | nlx_152429 | SCR_001141 | Phoenix Pharmaceuticals Inc. | 2026-02-07 02:05:27 | 1136 |
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