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URL: https://github.com/zhongguojie1998/CSOmap
Proper Citation: CSOmap (RRID:SCR_027636)
Description: Software tool for reconstruction of cell spatial organization from single-cell RNA sequencing data based on ligand-receptor mediated self-assembly. Infers cellular spatial organization from scRNA-seq by modeling ligand–receptor-mediated self-assembly. It constructs 3D pseudo-space and quantifies cell–cell interactions for downstream visualization and hypothesis testing.
Resource Type: source code, software application, software resource
Defining Citation: PMID:32541867
Keywords: Infer cellular spatial organization from scRNA-seq, modeling ligand–receptor-mediated self-assembly, reconstruction of cell spatial organization, single-cell RNA sequencing data, construct 3D pseudo-space, quantify cell–cell interactions,
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