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URL: https://github.com/open2c/cooltools
Proper Citation: cooltools (RRID:SCR_026118)
Description: Software suite of computational tools that enables flexible, scalable, and reproducible analysis of high-resolution contact frequency data. Provides suite of computational tools with paired python API and command line access, which facilitates workflows either on high-performance computing clusters or via custom analysis notebooks. As part of the Open2C ecosystem, cooltools also provides detailed introductions to key concepts in Hi-C-data analysis with interactive notebook documentation.
Resource Type: software toolkit, source code, software resource
Defining Citation: PMID:38709825
Keywords: enables reproducible analysis, high-resolution contact frequency data, paired python API,
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