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URL: https://github.com/marbl/Winnowmap
Proper Citation: Winnowmap (RRID:SCR_025349)
Description: Software tool as long-read mapping algorithm optimized for mapping ONT and PacBio reads to repetitive reference sequences. Winnowmap2 computes each read mapping through collection of confident subalignments. This approach is more tolerant of structural variation and more sensitive to paralog-specific variants within repeats.
Synonyms: Winnowmap2
Resource Type: source code, software resource
Defining Citation: PMID:35365778
Keywords: long-read mapping, ONT and PacBio reads, repetitive reference sequences, paralog specific variants within repeats,
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