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URL: https://github.com/klebgenomics/Kleborate
Proper Citation: Kleborate (RRID:SCR_024051)
Description: Software tool to screen genome assemblies of Klebsiella pneumoniae and the Klebsiella pneumoniae species complex (KpSC) for MLST sequence type, species (e.g. K. pneumoniae, K. quasipneumoniae, K. variicola, etc.), ICEKp associated virulence loci (yersiniabactin (ybt), colibactin (clb), salmochelin (iro), hypermucoidy (rmpA)), virulence plasmid associated loci (salmochelin (iro), aerobactin (iuc), hypermucoidy (rmpA, rmpA2)), antimicrobial resistance determinants (acquired genes, SNPs, gene truncations and intrinsic ?-lactamases), and K (capsule) and O antigen (LPS) serotype prediction, via wzi alleles and Kaptive.
Synonyms: KLEBORATE, kleborate
Resource Type: software resource, software application, data analysis software, data processing software
Keywords: screen genome assemblies, Klebsiella pneumoniae, Klebsiella pneumoniae species complex, genome assemblies,
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