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URL: http://protchem.hunnu.edu.cn/toxin/
Proper Citation: Animal Toxin Database (RRID:SCR_007035)
Description: Database of animal toxins, this most recent release (2009) focused on constructing a global-scale animal toxin-channel interaction network based on literature and database annotations through the integration of an ion channel database into ATDB 2.0. Most ion channel sequences were categorized and annotated with a hierarchic controlled term system (Ion Channel Ontology). More than 55,022 possible T-C interactions were extracted by text mining which link the toxin and ion channel database. These interaction data were classified carefully based on evidence type, in which 9,193 high confidence interactions were annotated in active site level. A web-based T-C interaction network view was build to visualize and make data access easy. The features and updates of ATDB 2.0 are summarized as follows: # AN interaction dataset including 55,022 toxin-channel interactions # Ion channel database (5,097 entries) # Ontology for ion channel classification (Ion Channel Ontology) # 3000 maps for toxins and ion channels interaction # More than 600 additional toxin entries # PDB view to visualize 3-D structure of molecule # More flexible option for data downloads. You may submit new toxins to the database.
Abbreviations: ATDB
Resource Type: ontology, database, service resource, storage service resource, data repository, data or information resource, controlled vocabulary
Defining Citation: PMID:17933766, PMID:20685369
Keywords: toxin, ion channel, interaction, blast, ligand, 3d structure, data analysis service
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