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URL: https://broadinstitute.github.io/warp/docs/Pipelines/SlideTags_Pipeline/README
Proper Citation: SlideTags.wdl (RRID:SCR_027567)
Description: Software pipeline as open-source, cloud-optimized workflow for processing spatial transcriptomics data. It supports data derived from spatially barcoded sequencing technologies, including Slide-tags-based single-molecule profiling. The pipeline processes raw sequencing data into spatially resolved gene expression matrices, ensuring accurate alignment, spatial positioning, and quantification.
Synonyms: Slide-tags
Resource Type: software resource, software application, data processing software, data analysis software
Keywords: Spatial transcriptomics data, single-cell data, Slide-tags technology data, spatial barcode processing pipeline, spatial gene expression quantification, reads alignment, genome, spatial positioning, human tissue data analysis, 5 alpha-SR2
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