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https://edspace.american.edu/openbehavior/project/optimouse/

Project related to individual mice positions analysis, specifically their nose positions. Includes software tool for analysis of mouse position data designed by Hebrew University scientists. Provides open source software to analyze positions of individual mice, specifically their nose positions, in behavioral arena with the goal of minimizing error.

Proper citation: Optimouse project (RRID:SCR_021463) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/argus/

Portal provides software tool for analysis and quantification of both single and socially interacting zebrafish. Software data extraction and analysis tool built in open source R language for tracking zebrafish behavior.

Proper citation: Argus (RRID:SCR_021585) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/mousemove/

Portal provides MouseMove software system used to analyze Open Field behavior of mice after experimental stroke to show reduced locomotor activity and to quantify laterality deficits. System is used in combination with open source program ImageJ and MTrack2 plugin to analyze pre recorded Open Field test video. System has two downloadable components, ImageJ macro and separate program with custom built MouseMove GUI. ImageJ is used to subtract background video from experiment and create image of animals total trajectory. MouseMove GUI then completes detailed analysis of movement patterns, measuring fractional time spent stationary, distance traveled, speed mean and various details of laterality.

Proper citation: MouseMove project (RRID:SCR_021581) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/mousetrap/

Project related to mouse tracking and analysis of mouse movements during computerized lab experiments. Provides open source software plugin to record and analyze mouse movements.

Proper citation: Mousetrap project (RRID:SCR_021456) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/medparse/

Project related to saving precise times of behavioral events.Provides software tool to read MedPC data into Python and Matlab.

Proper citation: MedParse project (RRID:SCR_021455) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/offline-behavior-video-analysis/

Project related to visualizing and quantifying movement from pre-recorded videos. Provides software toolbox for visualizing and quantifying movement.Used for summarizing animal movement data as single image ( spectral time lapse algorithm) as well as automate analysis of animal movement data.

Proper citation: Quantifying Animal Movement from Pre-recorded Videos project (RRID:SCR_021436) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/boris/

Project related to computer based review of previously recorded videos or live observations. Related to study of animal and human behavior. Provides open source, multiplatform standalone program that allows user specific coding environment for computer based review of previously recorded videos or live observations.Developed by scientists from University of Turin.

Proper citation: Behavioral Observation Research Interactive Software project (RRID:SCR_021434) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/ratcave/

Portal provides open source, cross platform Python library that adds 3D stimulus support to all OpenGL based 2D Python stimulus libraries. Ratcave comes with resources including basic 3D object primitives and wide range of 3D light effects. Intuitive object oriented interface allows for all objects, which include meshes, lights, and cameras, can be repositioned, rotated, and scaled.

Proper citation: Ratcave project (RRID:SCR_021555) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/m-track/

Project related to tracking movement of labelled paws in grooming and freely behaving mice. Provides software toolbox for automated detection of forepaw trajectories in mice.

Proper citation: M-Track project (RRID:SCR_021433) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/pathfinder/

Project to detect spatial navigation behavior in animals.Provides open source software for analyzing spatial navigation search strategies developed by University of British Columbia scientists.

Proper citation: Pathfinder project (RRID:SCR_021447) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/autopilot/

Project related to behavioral experiments.Provides software Python framework for running behavioral experiments designed by University of Oregon scientists.

Proper citation: AutoPilot project (RRID:SCR_021448) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/bonsai/

Project related to composing reactive and asynchronous data streams coming from video cameras, microphones, electrophysiology systems or data acquisition boards. Provides open source software tool as visual language for reactive programming.

Proper citation: Bonsai project (RRID:SCR_021443) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/deepbehavior/

Project related to behavior tracking and analysis. Provides deep learning toolbox that automates taking high speed quality video to track behavior in rodents and humans.

Proper citation: DeepBehavior project (RRID:SCR_021387) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/worm-behavior-platform/

Project related to sharing worm tracking data and analysis routines.Open access repository for storing, accessing, filtering data and analysis.

Proper citation: Worm Behavior Platform project (RRID:SCR_021420) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/sleap/

Collection of tools to do video analysis in behavioral neuroscience applications.Offers open source software tools including SLEAP, LEAP and MotionMapper.

Proper citation: SLEAP, LEAP and MotionMapper project (RRID:SCR_021383) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/idtracker-ai/, https://idtrackerai.readthedocs.io/en/latest/

Project related to tracking individual animals in large collective groups.Provides algorithm and software for tracking individuals in large collectives of unmarked animals.Tracks animal identification and tracks when animals touch or cross paths in front of one another.

Proper citation: idtracker.ai project (RRID:SCR_021417) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/cave/

Project related to calcium imaging.Provide open source tool for combined analysis of head mounted calcium imaging and behavior. Used to analyze imaging data from head mounted microscopes simultaneously with behavioral data.

Proper citation: Calcium ActiVity Explorer project (RRID:SCR_021419) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/toxtrac/

Project related to high speed tracking of animals.Provides software tool for tracking organisms.Can handle one or several animals in one or several environments.Used for fish, insects, rodents, etc.

Proper citation: ToxTrac project (RRID:SCR_021424) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/bonzeb/

Portal provides tools for investigating visuomotor integration specific to high speed kinematic tracking in small model organisms in closed loop experiments. University of Toronto scientists developed suite of Bonsai modules for specifically tracking and analyzing zebrafish movements and integrating these data with closed-loop experiments. BonZeb modules can also be used in an open-loop fashion for collecting, analyzing, and integrating data from multiple sources in real time, or from offline sources for batch processing of pre-recorded data.

Proper citation: BonZeb project (RRID:SCR_021388) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/brainglobe/

Project is related to working with atlas data from multiple species on common platform.Provides collection of Python tools for working with atlas data from multiple species on common platform and for morphological analyses in systems neuroscience.

Proper citation: BrainGlobe project (RRID:SCR_021481) Copy   

•   Source: SciCrunch Registry