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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Website Status Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
Australian Antarctic Data Centre
 
Resource Report
Resource Website
10+ mentions
Australian Antarctic Data Centre (RRID:SCR_006320) AADC data or information resource, organization portal, portal Centre is committed to free and open exchange of scientific data and is working collaboratively with international centres, networks and scientists to build sustainable polar data commons. Delivers professional data management and analysis services to Antarctic scientists and environmental managers. Supports logistical operations of Australian Antarctic Program. Data held in AADC data stores are qualified with metadata and discoverable through Catalogue of Australian Antarctic and Sub-antarctic Metadata (CAASM http://data.aad.gov.au/aadc/metadata) or through customized applications accessible via the website. All data is archived in AADC to permit its re-use. AADC has capability to create DOIs for datasets. Australian Antarctic Program, exchange of scientific data, polar data commons, Catalogue of Australian Antarctic and Sub-antarctic Metadata, DOIs for datasets is listed by: DataCite
is listed by: re3data.org
is related to: GBIF - Global Biodiversity Information Facility
nlx_152019 SCR_006320 Australian Antarctic Data Center 2026-02-14 02:05:22 12
AidData
 
Resource Report
Resource Website
10+ mentions
AidData (RRID:SCR_010480) AidData data or information resource, portal, database Portal of information about international economic development assistance, dating back to 1947, that includes a database of nearly one million past and present aid activities around the world, aid information management services and tools, data visualization technologies, and research designed to increase understanding of development finance. AidData is searchable by topic such as disaster prevention, energy supply, water supply or reconstruction relief. You may also search by specific regions including Africa, Europe, America, Asia, or Oceania. economic assistance, economic development, economic, development is listed by: re3data.org Acknowledgement requested, The community can contribute to this resource nlx_157754 SCR_010480 AidData - Open Data for International Development 2026-02-14 02:05:09 21
Alaska Ocean Observing System
 
Resource Report
Resource Website
Alaska Ocean Observing System (RRID:SCR_010481) AOOS data or information resource, portal, database Portal for ocean and coastal observations data. They address regional and national needs for ocean information, gather specific data on key coastal and ocean variables, and ensure timely and sustained dissemination and availability of these data. . AOOS programmatic focus areas are: * Safe marine operations * Coastal hazard mitigation * Tracking ecosystem and climate trends * Monitoring water quality coastal ecology, marine ecology, oceanography, coast, ocean, alaska, marine, ecosystem is listed by: re3data.org
has parent organization: Integrated Ocean Observing System
nlx_157756 SCR_010481 AOOS - Alaska Ocean Observing System 2026-02-14 02:05:31 0
SGD
 
Resource Report
Resource Website
1000+ mentions
SGD (RRID:SCR_004694) SGD, SGD LOCUS, SGD REF data or information resource, database A curated database that provides comprehensive integrated biological information for Saccharomyces cerevisiae along with search and analysis tools to explore these data. SGD allows researchers to discover functional relationships between sequence and gene products in fungi and higher organisms. The SGD also maintains the S. cerevisiae Gene Name Registry, a complete list of all gene names used in S. cerevisiae which includes a set of general guidelines to gene naming. Protein Page provides basic protein information calculated from the predicted sequence and contains links to a variety of secondary structure and tertiary structure resources. Yeast Biochemical Pathways allows users to view and search for biochemical reactions and pathways that occur in S. cerevisiae as well as map expression data onto the biochemical pathways. Literature citations are provided where available. database, yeast, pathway, analysis, gene, nomenclature, predicted sequence, fungi, functional relationship, protein structure, bio.tools, FASEB list uses: InterMOD
is used by: NIF Data Federation
is used by: PhenoGO
is listed by: re3data.org
is listed by: OMICtools
is listed by: InterMOD
is listed by: bio.tools
is listed by: Debian
is affiliated with: InterMOD
is related to: AmiGO
is related to: Yeast Search for Transcriptional Regulators And Consensus Tracking
is related to: HomoloGene
is related to: TXTGate
is related to: PhenoGO
has parent organization: Stanford University School of Medicine; California; USA
has parent organization: Stanford University; Stanford; California
is parent organization of: Ascomycete Phenotype Ontology
is parent organization of: SGD Gene Ontology Slim Mapper
NHGRI 5P41HG001315-11;
NHGRI 5P41HG002273-05;
NHGRI 5U41HG001315-18;
NHGRI 2U41HG002273-13;
NHGRI 5R01HG004834-04
PMID:24265222
PMID:12519985
PMID:9399804
Free for academic use, The community can contribute to this resource, Non-commercial nif-0000-03456, biotools:sgd, r3d100010419, OMICS_01661 https://bio.tools/sgd
https://doi.org/10.17616/R3N313
http://genome-www.stanford.edu/Saccharomyces/ SCR_004694 SGD LOCUS, Saccharomyces Genome Database, SGD REF 2026-02-14 02:06:21 1920
UniPROBE
 
Resource Report
Resource Website
100+ mentions
UniPROBE (RRID:SCR_005803) UniPROBE data or information resource, database Database that hosts experimental data from universal protein binding microarray (PBM) experiments (Berger et al., 2006) and their accompanying statistical analyses from prokaryotic and eukaryotic organisms, malarial parasites, yeast, worms, mouse, and human. It provides a centralized resource for accessing comprehensive data on the preferences of proteins for all possible sequence variants ("words") of length k ("k-mers"), as well as position weight matrix (PWM) and graphical sequence logo representations of the k-mer data. The database's web tools include a text-based search, a function for assessing motif similarity between user-entered data and database PWMs, and a function for locating putative binding sites along user-entered nucleotide sequences. protein, in vitro, dna binding, protein binding, genetics, dna, nucleotide sequence, sequence variant, k-mer, position weight matrix, graphical sequence logo, motif, motif similarity, binding site, microarray, protein-dna interaction, protein binding microarray probe sequence, probe, FASEB list is listed by: re3data.org
is listed by: OMICtools
PMID:21037262
PMID:18842628
Acknowledgement requested, Academic research use license nif-0000-03611, OMICS_00546, r3d100010557 http://thebrain.bwh.harvard.edu/pbms/webworks_pub/
https://doi.org/10.17616/R35C9J
SCR_005803 UniPROBE Database, Universal Protein Binding Microarray Resource for Oligonucleotide Binding Evaluation, Universal PBM Resource for Oligonucleotide Binding Evaluation 2026-02-14 02:05:53 149
Tree of Life Web Project
 
Resource Report
Resource Website
10+ mentions
Tree of Life Web Project (RRID:SCR_005673) ToL data or information resource, database A collection of information about biodiversity compiled collaboratively by hundreds of expert and amateur contributors. Its goal is to contain a page with pictures, text, and other information for every species and for each group of organisms, living or extinct. Connections between Tree of Life web pages follow phylogenetic branching patterns between groups of organisms, so visitors can browse the hierarchy of life and learn about phylogeny and evolution as well as the characteristics of individual groups. genomics, invertebrate, taxonomy, image, phylogeny, FASEB list is listed by: re3data.org
has parent organization: University of Arizona; Arizona; USA
NSF DBI-0078294;
NSF DUE-0333715;
NSF EF-0531754
The community can contribute to this resource, Acknowledgement requested, Copyrighted, Creative Commons Attribution-NonCommercial License, (ToL Glossary), Creative Commons Attribution License r3d100010351, nif-0000-03586 https://doi.org/10.17616/R30K6X http://phylogeny.arizona.edu/tree/phylogeny.html SCR_005673 Tree of Life 2026-02-14 02:05:57 36
DOE Joint Genome Institute
 
Resource Report
Resource Website
500+ mentions
DOE Joint Genome Institute (RRID:SCR_003045) DOE JGI, JGI, data or information resource, organization portal, portal Institute to advance genomics in support of the DOE missions related to clean energy generation and environmental characterization and cleanup. Supported by the DOE Office of Science, the DOE JGI unites the expertise at Lawrence Berkeley National Laboratory, Lawrence Livermore National Laboratory, and the HudsonAlpha Institute for Biotechnology. The facility provides integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to these challenges. genomics, sequencing, computational analysis, clean energy, environment, biotechnology, nucleotide sequence, protein, genome, bacteria, microorganism, fungal colony, fungal community, dna, phenotype, molecular biology, life science, genomics, genetics, nature, nurture, ecology, bioenergetics, high-throughput sequencing is listed by: re3data.org
has parent organization: University of California; California; USA
is parent organization of: Microbial Genetics Resource at JGI
is parent organization of: JGI Genome Portal
is parent organization of: Genomes Online Database
is parent organization of: IMG System
is parent organization of: Classifier for Metagenomic Sequences
is parent organization of: MycoCosm
is parent organization of: Plant Genome Resource at JGI
is parent organization of: Classifier for Metagenomic Sequences
is parent organization of: Phytozome
is parent organization of: IMG
is parent organization of: Metagenomics Program at JGI
is parent organization of: Assembly Likelihood Estimator
is parent organization of: 1000 Fungal Genome Project
is parent organization of: Bestus Bioinformaticus Tools
is parent organization of: Bestus Bioinformaticus Duk
is parent organization of: Bestus Bioinformaticus Merge
is parent organization of: Reformat
DOE Free, Freely available nif-0000-30425 SCR_003045 DOE Joint Genome Institute - Enabling Advances in Bioenergy & Environmental Research, Department of Energy Joint Genome Institute, Joint Genome Institute 2026-02-14 02:05:22 689
MINT
 
Resource Report
Resource Website
1000+ mentions
MINT (RRID:SCR_001523) MINT data or information resource, database A database that focuses on experimentally verified protein-protein interactions mined from the scientific literature by expert curators. The curated data can be analyzed in the context of the high throughput data and viewed graphically with the MINT Viewer. This collection of molecular interaction databases can be used to search for, analyze and graphically display molecular interaction networks and pathways from a wide variety of species. MINT is comprised of separate database components. HomoMINT, is an inferred human protein interatction database. Domino, is database of domain peptide interactions. VirusMINT explores the interactions of viral proteins with human proteins. The MINT connect viewer allows you to enter a list of proteins (e.g. proteins in a pathway) to retrieve, display and download a network with all the interactions connecting them. protein-protein interaction, protein, interaction, virus, peptide, organelle co-localization, pathway, molecular interaction, papillomavirus, epstein-barr virus, hepatitis b virus, hepatitis c virus, human adenovirus, human herpesvirus, human immunodeficiency virus, influenza a virus, vaccinia virus, simian virus 40, virus strains, virus protein, orthologous protein, network, proteomics, ortholog, FASEB list uses: IntAct
uses: PSI-MI
is listed by: re3data.org
is affiliated with: IMEx - The International Molecular Exchange Consortium
is related to: MPIDB
is related to: TissueNet - The Database of Human Tissue Protein-Protein Interactions
is related to: InteroPorc
is related to: Interaction Reference Index
is related to: Pathway Commons
is related to: ConsensusPathDB
is related to: VirusMINT
is related to: PSICQUIC Registry
is related to: Agile Protein Interactomes DataServer
has parent organization: University of Rome Tor Vergata; Rome; Italy
works with: IMEx - The International Molecular Exchange Consortium
European Union ;
ENFIN ;
Interaction Proteome Project ;
IMEx - The International Molecular Exchange Consortium ;
HUPO Proteomics Standards Initiative ;
AIRC Associazione Italiana per la Ricerca sul Cancro
PMID:22096227
PMID:24234451
PMID:19897547
PMID:18592188
PMID:18551417
PMID:18428712
PMID:17135203
PMID:11911893
nlx_152821, r3d100010414 https://doi.org/10.17616/R38S3B SCR_001523 MINT, the Molecular INTeraction database, Molecular Interactions Database, Molecular INTeraction database, MINT - the Molecular INTeraction database 2026-02-14 02:05:45 1109
Conserved Domain Database
 
Resource Report
Resource Website
100+ mentions
Conserved Domain Database (RRID:SCR_002077) CDD data or information resource, database Database of annotations of functional units in proteins including multiple sequence alignment models for ancient domains and full-length proteins. This collection of models includes 3D structures that display the sequence/structure/function relationships in proteins. It also includes alignments of the domains to known three-dimensional protein structures in the MMDB database. The source databases are Pfam, Smart, and COG. Users can identify amino acids in protein sequences with the resources available as well as view single sequences embedded within multiple sequence alignments. protein, amino acid sequence, nucleic acid, 3d structure, annotation, function, sequence, structure, amino acid, gold standard is used by: Mutation Annotation and Genomic Interpretation
is listed by: re3data.org
is related to: Pfam
is related to: SMART
is related to: COG
is related to: NCBI Structure
has parent organization: NCBI
works with: Conserved Domains Search
PMID:25414356
PMID:18984618
nif-0000-02647 http://www.ncbi.nlm.nih.gov/sites/entrez?db=cdd SCR_002077 Conserved Domains Database, Conserved Domains 2026-02-14 02:05:46 306
UniProt
 
Resource Report
Resource Website
10000+ mentions
UniProt (RRID:SCR_002380) UniProt data or information resource, database Collection of data of protein sequence and functional information. Resource for protein sequence and annotation data. Consortium for preservation of the UniProt databases: UniProt Knowledgebase (UniProtKB), UniProt Reference Clusters (UniRef), and UniProt Archive (UniParc), UniProt Proteomes. Collaboration between European Bioinformatics Institute (EMBL-EBI), SIB Swiss Institute of Bioinformatics and Protein Information Resource. Swiss-Prot is a curated subset of UniProtKB. collection, protein, sequence, annotation, data, functional, information is used by: LIPID MAPS Proteome Database
is used by: ChannelPedia
is used by: Open PHACTS
is used by: DisGeNET
is used by: Smart Dictionary Lookup
is used by: MitoMiner
is used by: Cytokine Registry
is used by: MobiDB
is used by: Pathway Analysis Tool for Integration and Knowledge Acquisition
is used by: Phospho.ELM
is used by: GEROprotectors
is used by: SwissLipids
is recommended by: NIDDK Information Network (dkNET)
is recommended by: National Library of Medicine
is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases
is listed by: re3data.org
is listed by: LabWorm
is related to: Clustal W2
is related to: UniProt DAS
is related to: UniParc at the EBI
is related to: ProDom
is related to: LegumeIP
is related to: Pathway Commons
is related to: NIH Data Sharing Repositories
is related to: FlyMine
is related to: IMEx - The International Molecular Exchange Consortium
is related to: 3D-Interologs
is related to: Biomine
is related to: EBIMed
is related to: STOP
is related to: Coremine Medical
is related to: BioExtract
is related to: STRAP
is related to: GOTaxExplorer
is related to: GoAnnotator
is related to: IT-GOM: Integrated Tool for IC-based GO Semantic Similarity Measures
is related to: Whatizit
is related to: MOPED - Model Organism Protein Expression Database
is related to: Polbase
is related to: PredictSNP
is related to: PSICQUIC Registry
is related to: IntAct
is related to: p300db
is related to: UniProt Proteomes
is related to: SARS-CoV-2 mutation effects and 3D structure prediction from sequence covariation
has parent organization: European Bioinformatics Institute
has parent organization: SIB Swiss Institute of Bioinformatics
has parent organization: Protein Information Resource
is parent organization of: UniProtKB
is parent organization of: NEWT
is parent organization of: UniParc
is parent organization of: UniProt Chordata protein annotation program
is parent organization of: UniRef
works with: Genotate
works with: CellPhoneDB
works with: MOLEonline
works with: MiMeDB
NHGRI U41 HG006104;
NHGRI P41 HG02273;
NIGMS 5R01GM080646;
NIGMS R01 GM080646;
NLM G08 LM010720;
NCRR P20 RR016472;
NSF DBI-0850319;
British Heart Foundation ;
NEI ;
NHLBI ;
NIA ;
NIAID ;
NIDDK ;
NIMH ;
NCI ;
EMBL ;
PDUK ;
ARUK ;
NHGRI U24 HG007722
PMID:19843607
PMID:18836194
PMID:18045787
PMID:17142230
PMID:16381842
PMID:15608167
PMID:14681372
nif-0000-00377, SCR_018750, r3d100010357 http://www.ebi.uniprot.org
http://www.uniprot.org/uniprot/
http://www.pir.uniprot.org
ftp://ftp.uniprot.org
https://doi.org/10.17616/R3BW2M
SCR_002380 , The Universal Protein Resource, Universal Protein Resource, UNIPROT Universal Protein Resource 2026-02-14 02:05:47 17565
Greengenes
 
Resource Report
Resource Website
1000+ mentions
Greengenes (RRID:SCR_002830) data or information resource, database Database that provides access to the current and comprehensive 16S rRNA gene sequence alignment for browsing, blasting, probing, and downloading. The data and tools can assist the researcher in choosing phylogenetically specific probes, interpreting microarray results, and aligning/annotating novel sequences. The 16S rRNA gene database provides chimera screening, standard alignment, and taxonomic classification using multiple published taxonomies. ARB users can use Greengenes to update local databases., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. microbiome, rrna, 16s rrna, gene, dna, rna, chimera, alignment, taxonomic classification, taxonomy, FASEB list is listed by: OMICtools
is listed by: re3data.org
is listed by: Human Microbiome Project
has parent organization: Lawrence Berkeley National Laboratory
Department of Energy contract DE-AC02-05CH11231 PMID:16820507 Free, Freely available OMICS_01512, r3d100010549, nif-0000-02927 http://greengenes.lbl.gov
https://doi.org/10.17616/R36C8G
SCR_002830 2026-02-14 02:05:48 3125
MetaCrop
 
Resource Report
Resource Website
1+ mentions
MetaCrop (RRID:SCR_003100) MetaCrop data or information resource, database Database that summarizes diverse information about metabolic pathways in crop plants and allows automatic export of information for the creation of detailed metabolic models. It contains manually curated, highly detailed information about metabolic pathways in crop plants, including pathway diagrams, reactions, locations, transport processes, reaction kinetics, taxonomy and literature. It contains information about seven major crop plants with high agronomical importance and two model plants. metabolism, kinetic, enzyme, crop, pathway, substance, conversion, carbohydrate, lipid, cofactor, energy, nucleotide, amino acid, web service is listed by: re3data.org
is related to: SBML
has parent organization: Leibniz Institute of Plant Genetics and Crop Plant Research; Saxony-Anhalt; Germany
PMID:22086948
PMID:17933764
PMID:20375443
Free, Freely available nif-0000-03113, r3d100010123 https://doi.org/10.17616/R33G6T SCR_003100 2026-02-14 02:06:10 7
Nucleic Acid Database
 
Resource Report
Resource Website
10+ mentions
Nucleic Acid Database (RRID:SCR_003255) NDB data or information resource, database A database of three-dimensional structural information about nucleic acids and their complexes. In addition to primary data, it contains derived geometric data, classifications of structures and motifs, standards for describing nucleic acid features, as well as tools and software for the analysis of nucleic acids. A variety of search capabilities are available, as are many different types of reports. NDB maintains the macromolecular Crystallographic Information File (mmCIF). nucleic acid, dna, nucleopeptide, nucleoprotein, nucleotide, rna, transfection, sequence, structure, function, bio.tools, FASEB list is listed by: re3data.org
is listed by: bio.tools
is listed by: Debian
is related to: MINAS - Metal Ions in Nucleic AcidS
is related to: Biological Magnetic Resonance Data Bank (BMRB)
is related to: Jenalib: Jena Library of Biological Macromolecules
has parent organization: Rutgers University; New Jersey; USA
NSF ;
DOE ;
NIH
PMID:24185695
PMID:1384741
Free, Available for download, Freely available nif-0000-03184, biotools:ndb, r3d100010415 https://bio.tools/ndb
https://doi.org/10.17616/R3531R
SCR_003255 2026-02-14 02:05:49 36
RefSeq
 
Resource Report
Resource Website
10000+ mentions
RefSeq (RRID:SCR_003496) data or information resource, database Collection of curated, non-redundant genomic DNA, transcript RNA, and protein sequences produced by NCBI. Provides a reference for genome annotation, gene identification and characterization, mutation and polymorphism analysis, expression studies, and comparative analyses. Accessed through the Nucleotide and Protein databases. reference sequence, transcript, protein, dna, rna, plasmid, organelle, virus, genome, nucleic acid, ortholog, paralog, haplotype, nucleotide sequence, gene expression, blast, gold standard, bio.tools is listed by: OMICtools
is listed by: re3data.org
is listed by: bio.tools
is listed by: Debian
is related to: BeetleBase
is related to: EcoGene
is related to: INSDC
is related to: HFV Database
is related to: RefSeqGene
is related to: NCBI Protein Database
is related to: RefSeqGene
is related to: UniParc at the EBI
is related to: NCBI Nucleotide
is related to: UniParc
is related to: ProRepeat
is related to: NCBI Virus
is related to: Codon and Codon-Pair Usage Tables
is related to: RefSeq non-redundant proteins
has parent organization: NCBI
PMID:24316578
PMID:24259432
PMID:22121212
PMID:18927115
PMID:17130148
PMID:15608248
Free, Available for download, Freely available SCR_016579, nif-0000-03397, OMICS_01659, biotools:refseq, r3d100011306 ftp://ftp.ncbi.nlm.nih.gov/refseq
https://bio.tools/refseq
https://doi.org/10.17616/R3HP70
SCR_003496 RefSeq, , Reference Sequence Database, Reference Sequence, Reference Sequences, NCBI 2026-02-14 02:05:50 18049
NCBI Taxonomy
 
Resource Report
Resource Website
100+ mentions
NCBI Taxonomy (RRID:SCR_003256) NCBI Taxonomy data or information resource, database Database for a curated classification and nomenclature that contains the names of all organisms that are represented in the public sequence databases with at least one nucleotide or protein sequence. Data provided encompasses archaea, bacteria, eukaryota, viroids and viruses. The NCBI taxonomy database is not a primary source for taxonomic or phylogenetic information. Furthermore, the database does not follow a single taxonomic treatise but rather attempts to incorporate phylogenetic and taxonomic knowledge from a variety of sources, including the published literature, web-based databases, and the advice of sequence submitters and outside taxonomy experts. Consequently, the NCBI taxonomy database is not a phylogenetic or taxonomic authority and should not be cited as such. viroid, virus, nucleotide, protein, sequence, phylogeny, taxonomic, taxonomy, nomenclature, cladistics, classification, animal, genetic code, gold standard is used by: NIF Data Federation
is used by: Vertebrate Taxonomy Ontology
is listed by: re3data.org
is related to: Taxonomy
is related to: NEWT
is related to: Phenoscape Knowledgebase
is related to: EBIMed
is related to: GOTaxExplorer
is related to: Whatizit
is related to: Integrated Manually Extracted Annotation
has parent organization: NCBI
is parent organization of: NCBITaxon
PMID:18940862
PMID:18940867
Free, Freely available nif-0000-03179, r3d100010776 http://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html
https://doi.org/10.17616/R3X039
SCR_003256 NCBI Taxonomy Browser, Taxonomy Browser, Entrez Taxonomy Browser, NCBI Taxonomy Database 2026-02-14 02:06:14 273
PHI-base
 
Resource Report
Resource Website
100+ mentions
PHI-base (RRID:SCR_003331) PHI-base data or information resource, database Database that catalogs experimentally verified pathogenicity, virulence and effector genes from fungal, Oomycete and bacterial pathogens, which infect animal, plant, fungal and insect hosts. It is an invaluable resource in the discovery of genes in medically and agronomically important pathogens, which may be potential targets for chemical intervention. In collaboration with the FRAC team, it also includes antifungal compounds and their target genes. Each entry is curated by domain experts and is supported by strong experimental evidence (gene disruption experiments, STM etc), as well as literature references in which the original experiments are described. Each gene is presented with its nucleotide and deduced amino acid sequence, as well as a detailed description of the predicted protein's function during the host infection process. To facilitate data interoperability, genes have been annotated using controlled vocabularies and links to external sources (Gene Ontology terms, EC Numbers, NCBI taxonomy, EMBL, PubMed and FRAC). gene expression, pathogenic bacteria, virulence, infection, target site, gene, pathogen-host interaction, interaction, phenotype, pathogen, disease, host, anti-infective, nucleotide sequence, amino acid sequence, bio.tools, FASEB list is listed by: re3data.org
is listed by: bio.tools
is listed by: Debian
BBSRC BB/1000488/1 PMID:17942425
PMID:17153929
PMID:16381911
Free, Freely available nif-0000-03276, r3d100011301, biotools:phi-base https://bio.tools/phi-base
https://doi.org/10.17616/R35D1V
http://www4.rothamsted.bbsrc.ac.uk/phibase/ SCR_003331 Pathogen Host Interaction base, Pathogen Host Interaction, Pathogen Host Interaction-Base 2026-02-14 02:05:43 198
Protocols.io
 
Resource Report
Resource Website
100+ mentions
Protocols.io (RRID:SCR_010490) software resource, commercial organization A commercial protocol sharing tool, which allows scientists to check in protocols the way that computer scientists check in code. is used by: SPARC Portal
is used by: NIH Heal Project
is listed by: re3data.org
nlx_158033 SCR_010490 2026-02-14 02:08:15 198
AIMS Data Centre
 
Resource Report
Resource Website
1+ mentions
AIMS Data Centre (RRID:SCR_010475) AIMS Data Centre data or information resource, database Data catalogue, gathered by the Australian Institute of Marine Science (AIMS), a tropical marine research center, on marine science topics including reef weather, sea temperature, cyclones, and water quality. marine science, reef, marine, australia is listed by: re3data.org Creative Commons Attribution License, v3 Australia, Access to some data will be via legal data agreement. nlx_157748 SCR_010475 AIMS Data Catalogue, Australian Institute of Marine Science Data Centre, AIMS Data Center 2026-02-14 02:06:17 9
ALADDIN
 
Resource Report
Resource Website
50+ mentions
ALADDIN (RRID:SCR_010476) ALADDIN data or information resource, database Numerical database of atomic and molecular processes and particle-surface interactions. It has formatted data on atomic structure and spectra (energy levels,wave lengths, and transition probabilities); electron and heavy particle collisions with atoms, ions, and molecules (cross sections and/or rate coefficients, including, in most cases, analytic fit to the data); sputtering of surfaces by impact of main plasma constituents and self sputtering; particle reflection from surfaces; thermophysical and thermomechanical properties of beryllium and pyrolytic graphites. atomic, molecular, collision, radiative, process, structure, particle-solid surface interaction, physico-chemical, thermo-mechanical, material, fusion energy, plasma, FASEB list is listed by: re3data.org nlx_157749 SCR_010476 ALADDIN Database, ALADDIN Numerical Database, ALADDIN (A Labelled Atomic Data INterface) 2026-02-14 02:06:44 86
Access to Archival Databases
 
Resource Report
Resource Website
Access to Archival Databases (RRID:SCR_010479) AAD data or information resource, database Database of the U.S. National Archives and Records Administration that allows users to search by keyword or category. Specific topics in personal history, private sectors, places, wars or time periods can be chosen to help filter your research findings of the 85 million electronic records that have been made available. political activists, social history, government information is listed by: re3data.org nlx_157752 SCR_010479 Access to Archival Databases (AAD) 2026-02-14 02:06:37 0

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    Welcome to the nidm-terms Resources search. From here you can search through a compilation of resources used by nidm-terms and see how data is organized within our community.

  2. Navigation

    You are currently on the Community Resources tab looking through categories and sources that nidm-terms has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.

  3. Logging in and Registering

    If you have an account on nidm-terms then you can log in from here to get additional features in nidm-terms such as Collections, Saved Searches, and managing Resources.

  4. Searching

    Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:

    1. Use quotes around phrases you want to match exactly
    2. You can manually AND and OR terms to change how we search between words
    3. You can add "-" to terms to make sure no results return with that term in them (ex. Cerebellum -CA1)
    4. You can add "+" to terms to require they be in the data
    5. Using autocomplete specifies which branch of our semantics you with to search and can help refine your search
  5. Collections

    If you are logged into nidm-terms you can add data records to your collections to create custom spreadsheets across multiple sources of data.

  6. Facets

    Here are the facets that you can filter the data by.

  7. Further Questions

    If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.