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https://edspace.american.edu/openbehavior/project/actifield/
Project related to measuring locomotor activity.System includes infrared motion detection and arduino to record activity in variety of chamber set ups. Provides actimeter and software tool to measure and record locomotor activity.
Proper citation: Actifield project (RRID:SCR_021452) Copy
https://edspace.american.edu/openbehavior/project/photometrybox/
Portal provides open source control system for in vivo fluorescence measurements from deep brain structures developed by University of California, San Francisco scientists. Microcontroller based solution for controlling optical components in intracranial photometry system and processing resulting signal.
Proper citation: PhotometryBox (RRID:SCR_021571) Copy
https://edspace.american.edu/openbehavior/project/rad/
Project related to tracking and recording activity in rodent home cages.Provides device that utilizes passive infrared (PIR) sensor to detect movement in cages and logs data to microSD card. Device is wireless and battery powered, and can record data for about 3 weeks on charge.
Proper citation: Rodent Activity Detector project (RRID:SCR_021451) Copy
https://edspace.american.edu/openbehavior/project/cerebralux/
Portal provides low cost, open source, wireless probe for optogenetic stimulation. This wireless system for optogenetic stimulation was developed by UCLA scientists. Device consists of two parts. Optical component is mounted on head permanently, whereas electronic component is removable and is applied for each experiment. Device is controlled via custom GUI (built with the TkInter Python 2.7 library) which sends pulses to device via Arduino Uno.
Proper citation: CerebraLux (RRID:SCR_021570) Copy
https://edspace.american.edu/openbehavior/project/nose-poke-device/
Portal provides arduino based, 3D-printed nose poke device for rats. Includes set of instructions on how to build this device using arduino, some 3D printed parts and some off-the-shelf electronic components.
Proper citation: Nose Poke Device (RRID:SCR_021568) Copy
https://edspace.american.edu/openbehavior/project/homecage-2bottle-choice/
Project related to studies of liquid ingestive behaviors used in neuroscience to investigate reward related behavior, metabolism, and circadian biology. Provides automated home cage sipper device for monitoring liquid ingestive behavior in rodents developed by Washington University, St. Louis scientists. Homecage fitted apparatus for automated, photobeam based detection of licks in two bottle choice task.
Proper citation: Automated Home Cage Rodent Two bottle Choice Test project (RRID:SCR_021445) Copy
https://edspace.american.edu/openbehavior/project/syringe-pump/
Open source syringe pump apparatus developed by scientists from Michigan Technological University. Syringe pump is designed using freely available open source computer aided design (CAD) software and manufactured using open source RepRap 3-D printer and readily available parts.
Proper citation: Pearce Lab Syringe Pump project (RRID:SCR_021566) Copy
https://edspace.american.edu/openbehavior/project/pasta/, https://github.com/ikodvanj/ratPASTA/
Project related to multifunctional neurobehavioral system developed by scientists at University of Zagreb School of Medicine, Zagreb, Croatia.System includes hardware and software tools.Provides software package for processing and visualising data from startle experiments in rodents or experiments measuring grip strength in rodents.
Proper citation: Platform for Acoustic STArtle project (RRID:SCR_021446) Copy
https://edspace.american.edu/openbehavior/project/operant-box-auditory-tasks-obat/
Portal provides operant box designed to train small primates in auditory tasks.Device is based on computer and Arduino Mega 2560 board, named OBAT (Operant Box for Auditory Tasks), designed to present two different auditory stimuli to small primates.All schematics and software source code are available.
Proper citation: Operant Box for Auditory Tasks project (RRID:SCR_021564) Copy
https://edspace.american.edu/openbehavior/project/robucket/
Portal for open source operant chamber, based on Arduino microcontroller platform, that can be used to train mice to respond for reward. Designed by NIDDK scientists.Apparatus contains two nose pokes, drinking well, and solenoid controlled sucrose delivery system. Chamber can run magazine training, fixed ratio and progressive ratio training schedules, and can be programmed to run more complicated behavioral paradigms.
Proper citation: Rodent Operant Bucket project (RRID:SCR_021565) Copy
https://edspace.american.edu/openbehavior/project/stytra/
Project related to involvement in larval zebrafish behavioral experiments.Provides integrated system for stimulation, tracking and closed loop behavioral experiments. Provides timed stimulus presentation, interfacing with external devices and simultaneous real time tracking of behavioral parameters such as position, orientation, tail and eye motion in both freely swimming and head restrained preparations.
Proper citation: Stytra project (RRID:SCR_021416) Copy
Software tool as real time position tracker for behavioral research. Used for processing images, extracting object position information, and streaming data to disk and/or the network in real time.
Proper citation: Online Animal Tracker (RRID:SCR_021412) Copy
https://github.com/flatironinstitute/CaImAn
Open source software tool for scalable calcium imaging data analysis. Used for large scale calcium imaging analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
Proper citation: Calcium Imaging data Analysis (RRID:SCR_021533) Copy
https://spikeforest.flatironinstitute.org/about
Open source and reproducible software suite that benchmarks performance of automated spike sorting algorithms across extensive, curated database of ground truth electrophysiological recordings, displaying results interactively on continuously updating website.
Proper citation: Spike Forest (RRID:SCR_021532) Copy
https://edspace.american.edu/openbehavior/project/locowhisk/
Portable behavioural set up that incorporates both gait analysis (using pedobarograph) and whisker movements (using high speed video camera and infrared light source).Automatically records both whisker and gait information and provides added statistical tools to analyse data. LocoWhisk system includes ARTv2 software for simultaneous measurement of locomotion behaviours and whisker movements.
Proper citation: LocoWhisk project (RRID:SCR_021430) Copy
https://edspace.american.edu/openbehavior/project/openfeeder/
Project related to studying reward and feeding behavior. Provides open source automatic feeding system that can be customized for food types from seeds to pellets.System integrates plexiglass tubes, Arduino Uno, motor driver, and piezo sensor to reliably deliver accurate amounts of food, and can also be built using 3D printed parts.
Proper citation: OpenFeeder (RRID:SCR_021552) Copy
Project related to temporally controlled rodent behavior. Provides system which utilizes optimal open source setup of hardware and software through behavioral setup for temporally controlled rodent behavior. Used for combined behavior, electrophysiology and optogenetics experiments. System allows for training of head fixed animals with calibrated sound stimuli, precisely timed fluid and air puff presentations as reinforcers.Combines microcontroller based behavior control with sound delivery system for acoustic stimuli, fast solenoid valves for reinforcement delivery and custom built sound attenuated chamber.
Proper citation: Head-Fixed Setup for Combined Behavior, Electrophysiology, and Optogenetics project (RRID:SCR_021427) Copy
Project related to auditory behavioral task data collection.Provided high throughput operant conditioning in mouse homecage system was developed by University of Maryland,College Park, scientists.Automated system for training up to hundreds of mice in auditory behavioral task features custom Matlab GUI running on desktop which connects to Raspberry Pi to administer auditory stimuli from USB soundcard and collects auditory data as well as licking data from water spout with commercially available capacitive sensors. Parts list and build instructions are readily available from paper and associated GitHub repository.
Proper citation: ToneBox (RRID:SCR_021548) Copy
https://edspace.american.edu/openbehavior/project/kinemouse-wheel/
Project is related to Columbia University designed KineMouse Wheel, light weight running wheel for head fixed locomotion that allows for 3D positioning of mice with single camera. System uses single camera and DeepLabCut (or similar) software.
Proper citation: KineMouse Wheel project (RRID:SCR_021425) Copy
https://edspace.american.edu/openbehavior/project/mousecam/
Project related to capturing detailed behavior in freely moving mice. System combines lightweight head mounted camera and head movement sensors to detect behaviors in mice. Used to monitor behaviors including eye position, whisking, and ear movements in unrestrained animals.Can be mounted in combination with neural implants for recording brain activity.Provides software Python package with functions for extracting and analyzing data recorded using camera.
Proper citation: Mousecam project (RRID:SCR_021422) Copy
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