Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
SunnyLab Resource Report Resource Website |
SunnyLab (RRID:SCR_000382) | commercial organization | An antibody supplier that provides a range of human antigens, serum and plasma, and cell culture reagents. | antibody, antigen, reagent, serum, plasma, culture, commercial | Commercially available | nlx_152472 | SCR_000382 | 2026-02-14 01:59:43 | 0 | ||||||||||
|
iASeq Resource Report Resource Website |
iASeq (RRID:SCR_000420) | software resource | Software that uses a Bayesian hierarchical mixture model to learn correlation patterns of allele-specificity among multiple proteins. | software package, unix/linux, mac os x, windows, r, chip-seq, rna-seq, snp |
is listed by: OMICtools has parent organization: Bioconductor |
PMID:23194258 | Free, Available for download, Freely available | OMICS_05505 | SCR_000420 | iASeq: integrating multiple sequencing datasets for detecting allele-specific events | 2026-02-14 01:59:43 | 0 | |||||||
|
University of Massachusetts; Massachusetts; USA Resource Report Resource Website 1+ mentions |
University of Massachusetts; Massachusetts; USA (RRID:SCR_000379) | UMass | university | A five-campus public university system in Massachusetts. The system includes four universities, a medical school, and a satellite campus. | public, university, system, boston, massachusetts, medicine |
is related to: Beta Cell Biology Consortium is parent organization of: University of Massachusetts Amherst; Massachusetts; USA is parent organization of: University of Massachusetts Lowell; Massachusetts; USA is parent organization of: University of Massachusetts Medical School; Massachusetts; USA is parent organization of: University of Massachusetts Chan Medical School Metabolomics Core Facility is parent organization of: University of Massachusetts Flow Cytometry Core Facility |
GRID grid.266684.8, ISNI 0000 0001 2184 9220, nlx_18192, Wikidata Q1061122 | https://ror.org/0260j1g46 | SCR_000379 | University of Massachusetts System, UMass, University of Massachusetts | 2026-02-14 01:59:44 | 2 | |||||||
|
Tianjin University; Tianjin; China Resource Report Resource Website |
Tianjin University; Tianjin; China (RRID:SCR_000372) | TJU | university | A national university in China with degree programs that include engineering, economics, humanities, law and art at the undergraduate, graduate and doctoral level. | china, national university, engineering, economics, law, humanities, doctoral, undergraduate, graduate |
is parent organization of: DEG - Database of Essential Genes is parent organization of: Greglist is parent organization of: QTLbase |
grid.33763.32, Crossref funder ID:501100004517, Wikidata:Q2031560, nlx_28979, ISNI:0000 0004 1761 2484 | https://ror.org/012tb2g32 | http://www.tju.edu.cn/english/ | SCR_000372 | TJU | 2026-02-14 01:59:42 | 0 | ||||||
|
Tuskegee University; Alabama; USA Resource Report Resource Website |
Tuskegee University; Alabama; USA (RRID:SCR_000373) | university | A private, historically black university that offers degree programs at the undergraduate, graduate, doctoral and professional levels. The university has programs that include veterinarian studies, allied health, nursing, education | tuskegee, alabama, private, historically black, doctoral, professional, veterinarian |
is parent organization of: Tuskegee Center for Biomedical Research - Digital Imaging is parent organization of: Tuskegee Center for Biomedical Research Shared Instrumentation Core is parent organization of: Tuskegee University Computational Biology and Bioinformatics - Biomedical Information Management Services |
nlx_156108, ISNI:0000 0001 0707 9354, Wikidata:Q1682329, grid.265253.5 | https://ror.org/0137n4m74 | SCR_000373 | Tuskegee University | 2026-02-14 01:59:42 | 0 | ||||||||
|
London School of Economics and Political Science; London; United Kingdom Resource Report Resource Website |
London School of Economics and Political Science; London; United Kingdom (RRID:SCR_000370) | LSE | university | A public research university in London with an emphasis in social science degree programs such as law, mathematics, public affairs and international history. The university offers degrees at the undergraduate, graduate and doctoral level. | social science, humanities, economics, undergraduate, graduate, postdoctoral, research | nlx_158056 | SCR_000370 | London School of Economics and Political Science, London School of Economics | 2026-02-14 01:59:42 | 0 | |||||||||
|
Tel Aviv University; Ramat Aviv; Israel Resource Report Resource Website |
Tel Aviv University; Ramat Aviv; Israel (RRID:SCR_000371) | university | A public university in Israel with degree programs in areas such as arts, engineering, humanities, the law and medicine at the undergraduate and graduate level. The university has affiliated but independent schools that focus on specific areas such as music, environmental studies, dentistry, social work, education and neuroscience. | israel, public, engineering, law, humanities, dentistry, social work, education, neuroscience, environment, music, medicine |
is related to: AgedBrainSYSBIO is parent organization of: MODENT - A Tool For Reconstructing Gene Regulatory Networks is parent organization of: ConSurf Database is parent organization of: HYDEN is parent organization of: TranspoGene is parent organization of: FlexProt: flexible protein alignment is parent organization of: Network-based Prediction of Human Tissue-specific Metabolism is parent organization of: ConSurf Database is parent organization of: RsiteDB- RNA binding sites database is parent organization of: Cross-Sectional and Longitudinal Aging Study is parent organization of: SPIKE |
nlx_45243 | SCR_000371 | TAU | 2026-02-14 01:59:44 | 0 | |||||||||
|
Lonza Resource Report Resource Website 500+ mentions |
Lonza (RRID:SCR_000377) | Lonza | commercial organization | A supplier of various biochemical products for research in pharmacy and biotechnology as well as the specialty ingredients market. Examples of products include active pharmaceutical ingredients, stem cell therapies, drinking water sanitizers and agriculture services and products. | supplier, biomaterial, biochemical, pharmacy, stem cell, agriculture |
is listed by: ScienceExchange is parent organization of: Lonza Viral Based Therapeutics |
grid.473847.b, ISNI: 0000 0004 4691 9813, SciEx_4981 | https://ror.org/00yqk5t74 | http://www.scienceexchange.com/facilities/lonza | SCR_000377 | 2026-02-14 01:59:42 | 963 | |||||||
|
University of Southern Queensland; Queensland; Australia Resource Report Resource Website |
University of Southern Queensland; Queensland; Australia (RRID:SCR_000374) | university | A public university in Australia that offers degree programs in business, law and education as well as health, engineering and the sciences at the undergraduate level. The university also does research at three research institutes and seven research centers which focus on a wide range of business, agricultural, scientific, environmental, and technological issues. | public, business, law, education, health, engineering, sciences, research, agriculture, technology, environment |
is parent organization of: Australian Digital Futures Institute is parent organization of: Fascinator is parent organization of: Integrated Content Environment |
ISNI:0000 0004 0473 0844, Wikidata:Q978124, nlx_46605, grid.1048.d, Crossref funder ID:501100001795 | https://ror.org/04sjbnx57 | SCR_000374 | USQ | 2026-02-14 01:59:42 | 0 | ||||||||
|
rTANDEM Resource Report Resource Website |
rTANDEM (RRID:SCR_000409) | software resource | An R/Bioconductor package that interfaces the X!Tandem protein identification algorithm. | standalone software, mac os x, unix/linux, windows, r, mass spectrometry, proteomics |
is used by: shinyTANDEM is listed by: OMICtools has parent organization: Bioconductor |
PMID:24700319 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_03516 | SCR_000409 | rTANDEM - Interfaces the tandem protein identification algorithm in R | 2026-02-14 01:59:45 | 0 | |||||||
|
Allegheny College; Pennsylvania; USA Resource Report Resource Website |
Allegheny College; Pennsylvania; USA (RRID:SCR_000369) | university | A private liberal arts college that offers degrees in social sciences, humanities and natural sciences at the undergraduate level. | private, liberal arts, social science, humanities, natural sciences, undergraduate | is parent organization of: Allegheny College Neuroscience | nlx_40570 | SCR_000369 | 2026-02-14 01:59:42 | 0 | ||||||||||
|
NucleoFinder Resource Report Resource Website 1+ mentions |
NucleoFinder (RRID:SCR_000368) | NucleoFinder | software resource | A software for a statistical approach for the detection of nucleosome positions in a cell population. The software identifies important features of nucleosome organization such as the spacing downstream of active promoters and the enrichment and depletion of GC/AT dinucleotides of in vitro nucleosomes. | nucleusome, position, promoter, analysis, downstream, nucleotide, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian |
PMID:23297036 | THIS RESOURCE IS NO LONGER IN SERVICE | biotools:nucleofinder, OMICS_00510 | https://omictools.com/nucleofinder-tool https://bio.tools/nucleofinder |
SCR_000368 | 2026-02-14 01:59:42 | 1 | ||||||
|
flowPeaks Resource Report Resource Website |
flowPeaks (RRID:SCR_000407) | software resource | Software for fast and automatic clustering to classify the cells into subpopulations based on finding the peaks from the overall density function generated by K-means. | software package, mac os x, unix/linux, windows, r, clustering, flow cytometry, gating, bio.tools |
is listed by: OMICtools is listed by: GitHub is listed by: bio.tools is listed by: Debian has parent organization: Bioconductor |
PMID:22595209 | Free, Available for download, Freely available | biotools:flowpeaks, OMICS_05604 | http://www.bioconductor.org/packages/devel/bioc/html/flowPeaks.html https://bio.tools/flowpeaks |
SCR_000407 | 2026-02-14 01:59:43 | 0 | |||||||
|
GEArray Expression Analysis Suite 2.0 Resource Report Resource Website 1+ mentions |
GEArray Expression Analysis Suite 2.0 (RRID:SCR_000282) | software resource | THIS RESOURCE HAS BEEN DISCONTINUED, documented April 15, 2016. New GEArray Expression Analysis Suite 2.0 was released at Dec 21, 2006, please read Release Notices for details. SABiosciences' GEArray Analysis Suite uses advanced Java functionality. In order to experience full functionality of this Portal, the following free programs and upgrades for PC and Macs should be properly installed. PC Environment Downloads Browser compatibility is not an issue on Windows systems, so all operating systems running Windows 98 and above and either Internet explorer or Netscape should be fine. Java 1.4.1 or above is required--this should download automatically upon the first entry into the Portal. If this does not happen, Java 1.5 is available for download from the following URL: Java 1.5 Mac Environment Downloads Browser compatibility is an issue, and Mac Operating Systems prior to Panther are not able to fully take advantage of this Portal's functionality. These programs need to be downloaded and installed in a specific order as follows: Panther 10.3.5 (Operating System), Safari 1.2 (Compatible Internet Browser) and Java 1.4.2 (Java environment). Abstract. INTRODUCTION: Toll-like receptors (TLR) comprehend an emerging family of receptors that recognize pathogen-associated molecular patterns and promote the activation of leukocytes. Surgical trauma and ischemia-reperfusion injury are likely to provide exposure to endogenous ligands for TLR in virtually all kidney transplant recipients. METHODS: Macroarray (GEArray OHS-018.2 Series-Superarray) analyses of 128 genes involved in TLR signaling pathway were performed in nephrectomy samples of patients with chronic allograft nephropathy (CAN) and acute rejection (AR, vascular and non vascular). The analysis of each membrane was performed by GEArray Expression Analysis Suite 2.0. RESULTS: Macroarray profile identified a gene expression signature that could discriminate CAN and AR. Three genes were significantly expressed between CAN and vascular AR: Pellino 2; IL 8 and UBE2V1. In relation to vascular and non-vascular AR, there were only two genes with statistical significance: IL-6 and IRAK-3. CONCLUSION: Vascular and non-vascular AR and CAN showed different expression of a few genes in TLR pathway. The analysis of nephrectomy showed that activation of TLR pathway is present in AR and CAN. Sponsor. This work was supported by the inconditional grant from Fundao de Amparo a Pesquisa do Estado de So Paulo (FAPESP, 04/08311-6), from Conselho Nacional de Pesquisa e Desenvolvimento (CNPq) and from Fundao Osvaldo Ramos. | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-30602 | SCR_000282 | GEArray | 2026-02-14 01:59:40 | 9 | ||||||||||
|
ProteinProphet Resource Report Resource Website 10+ mentions |
ProteinProphet (RRID:SCR_000286) | software resource | Software that automatically validates protein identifications made on the basis of peptides assigned to MS/MS spectra by database search programs such as SEQUEST. | standalone software, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian is listed by: SoftCite has parent organization: SourceForge |
PMID:14632076 | OMICS_02521, biotools:proteinprophet | https://bio.tools/proteinprophet | SCR_000286 | 2026-02-14 01:59:40 | 10 | ||||||||
|
MiRdup Resource Report Resource Website 1+ mentions |
MiRdup (RRID:SCR_000316) | software resource | A software used for the validation of pre-miRNAs predictions as well as predict the final structure of mature miRNA. | pre-miRNA, miRNA, mRNA, splicing, predictions |
is listed by: OMICtools has parent organization: McGill University; Montreal; Canada |
PMID:23748953 | Free, Available for download, Freely available | OMICS_00404 | https://www.cs.mcgill.ca/~blanchem/mirdup/ | http://This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or any later version. | SCR_000316 | 2026-02-14 01:59:41 | 1 | ||||||
|
QUALIFIER Resource Report Resource Website |
QUALIFIER (RRID:SCR_000389) | software resource | Software that provides quality control and quality assessment tools for gated flow cytometry data. | software package, mac os x, unix/linux, windows, r, cell based assay, flow cytometry, infrastructure |
is listed by: OMICtools has parent organization: Bioconductor |
PMID:23020243 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_05618 | SCR_000389 | QUALIFIER - Quality Control of Gated Flow Cytometry Experiments | 2026-02-14 01:59:43 | 0 | |||||||
|
Scribe Resource Report Resource Website |
Scribe (RRID:SCR_000423) | Scribe | software resource | Scribe encodes papers to populate the BrainMap Database | magnetic resonance, pet, spect |
is used by: brainmap.org is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) |
Free, Freely available | nlx_155958 | SCR_000423 | 2026-02-14 01:59:43 | 0 | ||||||||
|
GraphPad Resource Report Resource Website 1000+ mentions |
GraphPad (RRID:SCR_000306) | commercial organization | A commercial graphing software company that offers scientific software for statistical analyses, curve fitting and data analysis. It offers four programs: Prism, InStat, StatMate and QuickCalcs. | company, data, graph, scientific, statistical, analysis, curve, fitting |
is listed by: SoftCite is parent organization of: GraphPad Prism |
Restricted | nlx_156835 | SCR_000306 | 2026-02-14 01:59:42 | 1284 | |||||||||
|
Altmetric Bookmarklet Resource Report Resource Website |
Altmetric Bookmarklet (RRID:SCR_000427) | Altmetric Bookmarklet | software resource | Free bookmarklet for Chrome, Firefox and Safari that allows you to instantly get article level metrics for any recent paper. Simply drag the button below to your bookmarks bar, navigate to a journal article page, and hit Altmetric it! | altmetrics, chrome, firefox, safari | is listed by: FORCE11 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_156030 | http://www.force11.org/node/4720 | SCR_000427 | The Altmetric Bookmarklet | 2026-02-14 01:59:43 | 0 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the nidm-terms Resources search. From here you can search through a compilation of resources used by nidm-terms and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that nidm-terms has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on nidm-terms then you can log in from here to get additional features in nidm-terms such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into nidm-terms you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
