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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Website Status Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
FaceSync project
 
Resource Report
Resource Website
FaceSync project (RRID:SCR_021393) data or information resource, instrument resource, portal, project portal Project related to emotions and facial expressions. Includes open source guide to building affordable head mount for camera to maintain high temporal and spatial resolution of face throughout duration of experiment. Device is paired with FaceSync, Python toolbox which automatically synchronizes recorded facial expressions to videos and events such as social interactions. Automatically synchronize videos, manually align audio, plot facial landmark movements, graph data, head mounted camera setup, 3D blueprints, recording facial expressions, OpenBehavior, Bio.Tools, Instrument is listed by: OpenBehavior
is related to: FaceSync
PMID:32185017 Free, Freely available SCR_021393 2026-02-13 10:58:30 0
neurotic
 
Resource Report
Resource Website
neurotic (RRID:SCR_021406) data processing software, data analysis software, software toolkit, software application, software resource Software Python toolbox for interactive characterization in neuroscience.Users can read in variety of file formats for neural data and video, which they can then process, filter, analyze, annotate and plot.Used to review and annotate signal data synchronized with video, performs simple initial analyses including signal filtering and spike detection, supports variety of file formats.Facilitates collaborations by using portable specification for loading and processing data and retrieving data files from online sources.App for Windows, macOS, and Linux to review and annotate electrophysiology data and simultaneously captured video. Anotate electrophysiology data, interactive characterization, neural data and video, signal data, signal filtering, spike detection, OpenBehavior is listed by: OpenBehavior
is related to: neurotic project
DOI:10.1523/eneuro.0085-20.2020 Free, Available for download, Freely Available https://edspace.american.edu/openbehavior/project/neurotic/ SCR_021406 NEUROscience Tool for Interactive Characterization 2026-02-13 10:58:31 0
Attys project
 
Resource Report
Resource Website
Attys project (RRID:SCR_021461) data or information resource, instrument resource, portal, project portal Portal related to biomedical signals.Provides wearable data acquisition device with special focus on biomedical signals such as heart activity (ECG), muscle activity (EMG) and brain activity (EEG).Open source high precision bluetooth data acquisition device. Biomedical signals acquire, heart activity data acquire, muscle activity data acquire, brain activity data acquire, data acquisition device, bluetooth data acquisition device, OpenBehavior, Instrument is listed by: OpenBehavior Free, Freely available SCR_021461 Attys 2026-02-13 10:58:31 0
AutonoMouse project
 
Resource Report
Resource Website
AutonoMouse project (RRID:SCR_021462) data or information resource, instrument resource, portal, project portal Project related to self initiated conditioning and behavior tracking in mice. Provides automated system that can track large numbers (over 25) of socially housed mice through implanted RFID chips on mice. With RFID trackers and other analyses, behavior of mice can be tracked as they train and are subsequently tested on (or self-initiate testing in) odor discrimination task over months with thousands of trials performed every day. AutonoMouse system control, PyQt5 control GUI, schedule ordering, experiment monitoring, OpenBehavior, Instrument is listed by: OpenBehavior DOI:10.1371/journal.pone.0211571 Free, Freely available SCR_021462 AutonoMouse 2026-02-13 10:58:33 0
Autoreward2 project
 
Resource Report
Resource Website
Autoreward2 project (RRID:SCR_021460) data or information resource, instrument resource, portal, project portal Project related to detection and rewarding rodents in modified T-maze task. System designed to detect and reward rodents in modified T maze provided by Ruhr University Bochum, Germany scientists. Infrared triggered dual reward system, Autoreward2 system, detect rodents, reward rodents, Tmaze, OpenBehavior, Instrument is listed by: OpenBehavior
has parent organization: Ruhr University Bochum; North Rhine-Westphalia; Germany
Free, Freely available SCR_021460 Autoreward2 2026-02-13 10:58:32 0
BPM Biosignals project
 
Resource Report
Resource Website
BPM Biosignals project (RRID:SCR_021459) data or information resource, instrument resource, portal, project portal Portal as educational resource regarding construction and implementation of bioamplifiers as well as interpretation of biosignals. Bioamplifier construction, bioamplifier implementation, biosignals interpretation, OpenBehavior, Instrument is listed by: OpenBehavior Free, Freely available SCR_021459 BPM Biosignals 2026-02-13 10:58:31 0
Automated mouse homecage two bottle choice test project
 
Resource Report
Resource Website
Automated mouse homecage two bottle choice test project (RRID:SCR_021457) data or information resource, instrument resource, portal, project portal Project related to assessing preferences by mice among fluids in their homecages.Provided system includes homecage fitted apparatus for automated, photobeam based detection of licks in two bottle choice task. Used for automated mouse homecage two bottle choice test. Homecage fitted apparatus, licks automated detection, licks photobeam based detection, two bottle choice task, instrument, equipment, USEDit, OpenBehavior, Instrument is listed by: OpenBehavior Free, Freely available SCR_021457 Automated mouse homecage two bottle choice test 2026-02-13 10:58:31 0
Closed Loop System project
 
Resource Report
Resource Website
Closed Loop System project (RRID:SCR_021475) data or information resource, instrument resource, portal, project portal Portal includes system for combined behavioral tracking, electrophysiology, and closed loop stimulation provided by University of Oslo scientists.Integrates Bonsai and Open Ephys with multiple modules.Provides guide for setting up this system. Combined behavioral tracking, electrophysiology, closed loop stimulation, OpenBehavior, Instrument is listed by: OpenBehavior
has parent organization: University of Oslo; Oslo; Norway
DOI:10.1088/1741-2552/aacf45 Free, Freely available SCR_021475 Closed Loop System 2026-02-13 10:58:31 0
Ultrasonic Vocalizations Detector project
 
Resource Report
Resource Website
Ultrasonic Vocalizations Detector project (RRID:SCR_021471) data or information resource, instrument resource, portal, project portal Project related to ultrasonic vocalizations detection. Provides device designed for automatic detection of 50kHz ultrasonic vocalizations. Automated detection, 50 kHz, ultrasonic vocalizations, template matching in XBAT, Ultrasonic Vocalization Detector, OpenBehavior, Instrument is listed by: OpenBehavior DOI:10.1016/j.jneumeth.2014.08.007 Free, Freely available SCR_021471 Ultrasonic Vocalizations Detector 2026-02-13 10:58:31 0
EthoWatcher
 
Resource Report
Resource Website
1+ mentions
EthoWatcher (RRID:SCR_021504) data analysis software, software resource, data processing software, software application Software tool for behavioral and video tracking analysis in laboratory animals. Used to support detailed ethography, video tracking, and extraction of kinematic variables from digital video files of laboratory animals. Video tracking, kinematic variables extraction. digital video files, laboratory animals, OpenBehavior is listed by: OpenBehavior
is related to: EthoWatcher project
DOI:10.1016/j.compbiomed.2011.12.002 Free, Available for download, Freely Available https://edspace.american.edu/openbehavior/project/ethowatcher/ SCR_021504 ETHOWATCHER 2026-02-13 10:58:32 2
Feldman Lab Lickometer project
 
Resource Report
Resource Website
Feldman Lab Lickometer project (RRID:SCR_021469) data or information resource, instrument resource, portal, project portal Project related to function of cerebral cortex. Included model system for studying cortical function is provided by UC Berkeley scientists. System includes lickometer which employs infrared beam and sensor to minimize electrical noise artifacts during neurophysiology experiments and can be easily mounted in micromanipulator for precise and repeatable positioning.Open source lickometer was designed in conjunction with open source water delivery system.Together, these provide basic hardware for DIY behavioral assay and reward system for mice. Infrared beam, infrared sensor, neurophysiology experiment, DIY behavioral assay device, reward system for mice, OpenBehavior, Instrument is listed by: OpenBehavior
has parent organization: University of California at Berkeley; Berkeley; USA
Free, Freely available SCR_021469 Feldman Lab Lickometer 2026-02-13 10:58:33 0
Mousecam
 
Resource Report
Resource Website
Mousecam (RRID:SCR_021503) data analysis software, software resource, data processing software, software application Software Python package with functions for extracting and analyzing data recorded using camera system.Used to monitor behaviors including eye position, whisking, and ear movements in unrestrained animals.Can be mounted in combination with neural implants for recording brain activity. Lightweight head mounted camera system, head movement sensors, monitor eye position, monitor pupil dilation, monitor whisking, monitor pinna movements, monitor head motion, unrestrained mice, freely behaving mice, multichannel electrophysiology, OpenBehavior is listed by: OpenBehavior
is related to: Mousecam project
DOI:10.1016/j.neuron.2018.09.020 Free, Available for download, Freely Available https://edspace.american.edu/openbehavior/project/mousecam/ SCR_021503 2026-02-13 10:58:33 0
Hao Chen Lab Repository project
 
Resource Report
Resource Website
Hao Chen Lab Repository project (RRID:SCR_021467) data or information resource, instrument resource, portal, project portal Project aims to establish computing platform for rodent behavior research using Raspberry Pi computer. They have built several devices for conducting operant conditioning and monitoring environmental data. Computing platform, rodent behavior, Raspberry Pi computer, OpenBehavior, Instrument is listed by: OpenBehavior SCR_021467 Hao Chen Lab Repository 2026-02-13 10:58:33 0
PiDose project
 
Resource Report
Resource Website
PiDose project (RRID:SCR_021441) data or information resource, instrument resource, portal, project portal Project related to oral drug administration to group housed mice. Provides open source system for oral drug administration to group housed mice. System includes home cage attached device that weighs individual animals and administers daily dosage of drug solution based on each animal bodyweight through their drinking water. Group housed mice are identified through use of RFID tagging and receive both regular water and drug solution drops by licking at spout within PiDose module. Oral drug administration, group housed mice, OpenBehavior, Instrument is listed by: OpenBehavior DOI:10.1038/s41598-020-68477-2 Free, Freely available SCR_021441 PiDose 2026-02-13 10:58:32 0
Autonomous Training of a Forelimb Motor Task project
 
Resource Report
Resource Website
Autonomous Training of a Forelimb Motor Task project (RRID:SCR_021562) data or information resource, instrument resource, portal, project portal Portal related to individualized tracking of self directed motor learning in group housed mice performing skilled lever positioning task in home cage. Provides system for fully autonomous training of group housed mice on forelimb motor task. Task is run and controlled by Raspberry Pi microcomputer, which allows for cages to be monitored remotely through active internet connection. System was developed by University of Ottawa scientists. Instrument, individualized tracking, self directed motor learning, group housed mice, skilled lever positioning task, home cage, forelimb motor task, OpenBehavior is listed by: OpenBehavior
is related to: Autonomous Training of a Forelimb Motor Task
has parent organization: University of Ottawa; Ontario; Canada
DOI:10.1152/jn.00115.2017 Free, Freely available SCR_021562 Autonomous Training of a Forelimb Motor Task 2026-02-13 10:58:33 0
FlyPi
 
Resource Report
Resource Website
FlyPi (RRID:SCR_021563) data or information resource, instrument resource, portal, project portal Portal provides open source and affordable microscope experimental setup device based on Raspberry Pi, Arduino microcontroller and off-the-shelf electronic components. System design is based on 3D-printed mainframe, Raspberry Pi computer, and high definition camera system as well as Arduino based optical and thermal control circuits. All functions of FlyPi can be controlled through custom written graphical user interface. Instrument, microscope experimental system, Raspberry Pi, Arduino microcontroller, high definition camera system, Arduino, optical control circuits, thermal control circuits, OpenBehavior is listed by: OpenBehavior DOI:10.1371/journal.pbio.2002702 Free, Freely available SCR_021563 2026-02-13 10:58:34 0
Teensy-Based Interface project
 
Resource Report
Resource Website
Teensy-Based Interface project (RRID:SCR_021560) data or information resource, instrument resource, portal, project portal Portal provides Teensy-Based Interface system. System includes Teensy 3.2 microcontroller based interface that is easily programmable, and offers high speed, precisely timed behavioral data acquisition and digital and analog outputs for controlling sCMOS cameras and other devices. Developed by Boston University scientists. Instrument, Teensy microcontrollers, Teensy interface, sCMOS camera, camera control, behavioral experiments, OpenBehavior is listed by: OpenBehavior
is related to: Teensy-Based Interface
has parent organization: Boston University; Massachusetts; USA
DOI:10.1016/j.jneumeth.2019.03.019 Free, Freely available SCR_021560 Teensy-Based Interface 2026-02-13 10:58:32 0
Airtrack
 
Resource Report
Resource Website
1+ mentions
Airtrack (RRID:SCR_021561) data or information resource, instrument resource, portal, project portal Portal provides head fixed behavioral environment that uses lightweight physical maze floating on air table that moves around animals body under direct control of animal itself. Instrument, head fixed, behavioral environment, lightweight physical maze, maze floating on air table, table moves around animal, real world floating environment, OpenBehavior is listed by: OpenBehavior
has parent organization: Humboldt University of Berlin; Berlin; Germany
DOI:10.1152/jn.00088.2016 Free, Freely available SCR_021561 2026-02-13 10:58:34 1
DIY Rodent Running Disk
 
Resource Report
Resource Website
DIY Rodent Running Disk (RRID:SCR_021558) data or information resource, instrument resource, portal, project portal Portal related to Rodent Running Disk. Provided Rodent Running Disk was developed by University of California, Berkeley scientist. Acrylic disk mounted to optical encoder to achieve fast locomotion decoding. Instrument, rodent running disk, acrylic disk, OpenBehavior is listed by: OpenBehavior
has parent organization: University of California at Berkeley; Berkeley; USA
DOI:10.1016/j.neuron.2017.12.021 Free, Freely available SCR_021558 2026-02-13 10:58:32 0
SignalBuddy
 
Resource Report
Resource Website
SignalBuddy (RRID:SCR_021553) data or information resource, instrument resource, portal, project portal Portal related to signal generation. Provided system was developed by Columbia University scientists. System includes signal generator for scientific applications which generates digital or true analog signals (sine waves, step functions, and pulse trains) and can be controlled with intuitive serial monitor interface. Instrument, signal generator, sine waves, step functions, pulse trains, OpenBehavior is listed by: OpenBehavior
has parent organization: Columbia University; New York; USA
Free, Freely available SCR_021553 2026-02-13 10:58:32 0

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