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https://edspace.american.edu/openbehavior/project/airtrack/

Portal provides head fixed behavioral environment that uses lightweight physical maze floating on air table that moves around animals body under direct control of animal itself.

Proper citation: Airtrack (RRID:SCR_021561) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/diy-rodent-running-disk/

Portal related to Rodent Running Disk. Provided Rodent Running Disk was developed by University of California, Berkeley scientist. Acrylic disk mounted to optical encoder to achieve fast locomotion decoding.

Proper citation: DIY Rodent Running Disk (RRID:SCR_021558) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/signalbuddy/

Portal related to signal generation. Provided system was developed by Columbia University scientists. System includes signal generator for scientific applications which generates digital or true analog signals (sine waves, step functions, and pulse trains) and can be controlled with intuitive serial monitor interface.

Proper citation: SignalBuddy (RRID:SCR_021553) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/craniobot/

Portal provides computer numerical controlled robot for cranial microsurgeries developed by University of Minnesota scientist. Included cranial microsurgery platform combines automated skull surface profiling with computer numerical controlled milling machine to perform variety of cranial microsurgical procedures on mice.

Proper citation: Craniobot project (RRID:SCR_021573) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/pycontrol/

Portal provides system that combines open source hardware and software for control of behavioral experiments. Open source framework, combines Python scripts and Micropython microcontroller. Framework can be run through command line interface, or in user friendly graphical user interface that allows users to manage variety of devices such as nose pokes, LED drivers, stepper motor controllers and more. Data collected using this system can then be imported into Python for data analysis.

Proper citation: pyControl project (RRID:SCR_021574) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/photometrybox/

Portal provides open source control system for in vivo fluorescence measurements from deep brain structures developed by University of California, San Francisco scientists. Microcontroller based solution for controlling optical components in intracranial photometry system and processing resulting signal.

Proper citation: PhotometryBox (RRID:SCR_021571) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/hope/

Portal provides brain implant developed by MIT scientists. Implant carries 16 movable tetrodes along with two optic fibers or two injection cannulas. Designed with help of 3D CAD software, allowing modifications for various experimental needs, such as targeting different brain regions and use in other animal species (e.g., rats and non-human primates). Implant can be designed to shape of skull of individual monkeys based on pre-implantation magnetic resonance imaging, thus optimizing fit with skull surface and making recording from deep brain regions more reliable.

Proper citation: Hybrid-drive combining Optogenetics, Pharmacology, and Electrophysiology project (RRID:SCR_021572) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/cerebralux/

Portal provides low cost, open source, wireless probe for optogenetic stimulation. This wireless system for optogenetic stimulation was developed by UCLA scientists. Device consists of two parts. Optical component is mounted on head permanently, whereas electronic component is removable and is applied for each experiment. Device is controlled via custom GUI (built with the TkInter Python 2.7 library) which sends pulses to device via Arduino Uno.

Proper citation: CerebraLux (RRID:SCR_021570) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/nose-poke-device/

Portal provides arduino based, 3D-printed nose poke device for rats. Includes set of instructions on how to build this device using arduino, some 3D printed parts and some off-the-shelf electronic components.

Proper citation: Nose Poke Device (RRID:SCR_021568) Copy   

•   Source: SciCrunch Registry

https://github.com/strawlab/freemovr_engine

Software tool as virtual reality engine built on ROS and OpenSceneGraph.Perspective correct Virtual Reality for freely moving animals engine. Used for multicomputer realtime tracking and display with goal of being useful for scientific studies of vision and behavior.Part of FreemoVR system.

Proper citation: FreemoVR (RRID:SCR_021601) Copy   

•   Source: SciCrunch Registry

https://github.com/HanLabBU/micro-control-final

Teensy microcontroller based interface for optical imaging camera control during behavioral experiments.

Proper citation: Teensy-Based Interface (RRID:SCR_021602) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/syringe-pump/

Open source syringe pump apparatus developed by scientists from Michigan Technological University. Syringe pump is designed using freely available open source computer aided design (CAD) software and manufactured using open source RepRap 3-D printer and readily available parts.

Proper citation: Pearce Lab Syringe Pump project (RRID:SCR_021566) Copy   

•   Source: SciCrunch Registry

https://github.com/FlySorterLLC

Software tool to automate various fly handling tasks.Control software for Drosophila handling robot MAPLE.

Proper citation: Modular Automated Platform for Large Scale Experiments (RRID:SCR_021600) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/operant-box-auditory-tasks-obat/

Portal provides operant box designed to train small primates in auditory tasks.Device is based on computer and Arduino Mega 2560 board, named OBAT (Operant Box for Auditory Tasks), designed to present two different auditory stimuli to small primates.All schematics and software source code are available.

Proper citation: Operant Box for Auditory Tasks project (RRID:SCR_021564) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/robucket/

Portal for open source operant chamber, based on Arduino microcontroller platform, that can be used to train mice to respond for reward. Designed by NIDDK scientists.Apparatus contains two nose pokes, drinking well, and solenoid controlled sucrose delivery system. Chamber can run magazine training, fixed ratio and progressive ratio training schedules, and can be programmed to run more complicated behavioral paradigms.

Proper citation: Rodent Operant Bucket project (RRID:SCR_021565) Copy   

•   Source: SciCrunch Registry

https://github.com/amchagas/poke_device_arduino

Software tool as script to test if IR led, IR photodiode, arduino and 3D printed nose poke device work properly. Part of Nose Poke Device system.

Proper citation: poke device arduino (RRID:SCR_021608) Copy   

•   Source: SciCrunch Registry

https://github.com/delcasso/hope

Softwre tool as part of Hybrid-drive combining Optogenetics, Pharmacology, and Electrophysiology project for brain implant.

Proper citation: Hybrid-drive combining Optogenetics, Pharmacology, and Electrophysiology (RRID:SCR_021606) Copy   

•   Source: SciCrunch Registry

https://github.com/flatironinstitute/CaImAn

Open source software tool for scalable calcium imaging data analysis. Used for large scale calcium imaging analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

Proper citation: Calcium Imaging data Analysis (RRID:SCR_021533) Copy   

•   Source: SciCrunch Registry

https://hackaday.io/project/181604-mri-stereoscope

Project provides miniature mirror stereoscope system for MRI-scanner. System takes advantage of commonly used display equipment, MRI head coil, and display screen. Miniature Wheatstone stereoscope is used for human neuroimaging.

Proper citation: MRI-stereoscope project (RRID:SCR_021655) Copy   

•   Source: SciCrunch Registry

https://spikeforest.flatironinstitute.org/about

Open source and reproducible software suite that benchmarks performance of automated spike sorting algorithms across extensive, curated database of ground truth electrophysiological recordings, displaying results interactively on continuously updating website.

Proper citation: Spike Forest (RRID:SCR_021532) Copy   

•   Source: SciCrunch Registry