Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
MouseMove project Resource Report Resource Website |
MouseMove project (RRID:SCR_021581) | project portal, portal, data or information resource | Portal provides MouseMove software system used to analyze Open Field behavior of mice after experimental stroke to show reduced locomotor activity and to quantify laterality deficits. System is used in combination with open source program ImageJ and MTrack2 plugin to analyze pre recorded Open Field test video. System has two downloadable components, ImageJ macro and separate program with custom built MouseMove GUI. ImageJ is used to subtract background video from experiment and create image of animals total trajectory. MouseMove GUI then completes detailed analysis of movement patterns, measuring fractional time spent stationary, distance traveled, speed mean and various details of laterality. | Open Field behavior analysis, mice after experimental stroke, reduced locomotor activity, quantify laterality deficits, OpenBehavior |
is listed by: OpenBehavior is related to: MouseMove |
DOI:10.1038/srep16171 | Free, Freely available | SCR_021581 | MouseMove system | 2026-02-11 11:00:09 | 0 | ||||||||
|
Ratcave project Resource Report Resource Website |
Ratcave project (RRID:SCR_021555) | project portal, portal, data or information resource | Portal provides open source, cross platform Python library that adds 3D stimulus support to all OpenGL based 2D Python stimulus libraries. Ratcave comes with resources including basic 3D object primitives and wide range of 3D light effects. Intuitive object oriented interface allows for all objects, which include meshes, lights, and cameras, can be repositioned, rotated, and scaled. | Cognitive psychology, stimuli to subjects, response record, Python, 3D graphics library, OpenBehavior |
is listed by: OpenBehavior is related to: Ratcave |
DOI:10.3758/s13428-019-01245-x | Free, Freely available | SCR_021555 | Ratcave | 2026-02-11 11:00:10 | 0 | ||||||||
|
BrainGlobe project Resource Report Resource Website 1+ mentions |
BrainGlobe project (RRID:SCR_021481) | project portal, portal, data or information resource | Project is related to working with atlas data from multiple species on common platform.Provides collection of Python tools for working with atlas data from multiple species on common platform and for morphological analyses in systems neuroscience. | Atlas data from multiple species, atlas data on common platform, morphological analyses, systems neuroscience, OpenBehavior | is listed by: OpenBehavior | Free, Freely available | SCR_021481 | BrainGlobe | 2026-02-11 11:00:06 | 1 | |||||||||
|
Toolboxes for Spike and LFP Analysis project Resource Report Resource Website |
Toolboxes for Spike and LFP Analysis project (RRID:SCR_021478) | project portal, portal, data or information resource | Portal includes compared several toolboxes for spike and LFP analysis, connectivity analysis, dimensionality reduction, and generalized linear modeling. Discussion about major features of software available for Python and MATLAB including Brainstorm, Chronux, Elephant, FieldTrip, gramm, Spike Viewer, and SPIKY. They include succinct tables for assessing system and program requirements, quality of documentation and support, and data types accepted by each toolbox. | List of compared toolboxes for spike and LFP analysis, connectivity analysis, dimensionality reduction, generalized linear modeling, assessing system and program requirements, quality of documentation and support, data types accepted, OpenBehavior | is listed by: OpenBehavior | DOI:10.3389/fninf.2019.00057 | Free, Freely available | SCR_021478 | Toolboxes for Spike and LFP Analysis | 2026-02-11 11:00:07 | 0 | ||||||||
|
Scintillate project Resource Report Resource Website |
Scintillate project (RRID:SCR_021479) | project portal, portal, data or information resource | Project related to time series calcium imaging evaluation and pre-processing. Included open source graphical viewer for time series calcium imaging evaluation and pre-processing is provided by Swedish University scientists . | Image acquisition, time series calcium imaging evaluation, calcium imaging, |
is listed by: OpenBehavior is related to: Scintillate |
DOI:10.1016/j.jneumeth.2016.08.010 | Free, Freely available | SCR_021479 | Scintillate | 2026-02-11 11:00:16 | 0 | ||||||||
|
Automated Classification of Self-grooming in Mice project Resource Report Resource Website 1+ mentions |
Automated Classification of Self-grooming in Mice project (RRID:SCR_021597) | project portal, portal, data or information resource | Portal provides protocol that implements JAABA, open source machine learning based behavior detection system; motr, open-source mouse trajectory tracking software; and bonsai, open source system capable of streaming and recording video. Together they use these tools to process videos of mice performing grooming behaviors in variety of behavioral setups. | grooming behavior, behavior detection protocol, JAABA behavior detection system, motr mouse trajectory tracking software, bonsai streaming and recording video, OpenBehavior | is listed by: OpenBehavior | DOI:10.1016/j.jneumeth.2017.05.026 | Free, Freely available | SCR_021597 | Automated Classification of Self-grooming in Mice | 2026-02-11 11:00:09 | 1 | ||||||||
|
BonVision project Resource Report Resource Website |
BonVision project (RRID:SCR_021491) | project portal, portal, data or information resource | Project related to creating and controlling visual environments.Provided open source software package for creating and controlling visual environments was developed by University College London scientists. | Creating visual environments, controlling visual environments, Bonsai, 2D environment, 3D environments, OpenBehavior |
is listed by: OpenBehavior is related to: BonVision has parent organization: University College London; London; United Kingdom |
DOI:10.1101/2020.03.09.983775 | Free, Freely available | SCR_021491 | BonVision | 2026-02-11 11:00:17 | 0 | ||||||||
|
Calcium Imaging data Analysis Resource Report Resource Website 10+ mentions |
Calcium Imaging data Analysis (RRID:SCR_021533) | CaImAn | software application, image analysis software, software resource, software toolkit, data processing software, software library | Open source software tool for scalable calcium imaging data analysis. Used for large scale calcium imaging analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization. | calcium imaging analysis, movie handling, motion correction, source extraction, spike deconvolution, result visualization, OpenBehavior |
is listed by: OpenBehavior is related to: Calcium Imaging data Analysis project |
DOI:10.7554/elife.38173 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/caiman/ | SCR_021533 | 2026-02-11 11:00:18 | 37 | |||||||
|
Spike Forest Resource Report Resource Website 1+ mentions |
Spike Forest (RRID:SCR_021532) | software resource, software application, data processing software, data analysis software | Open source and reproducible software suite that benchmarks performance of automated spike sorting algorithms across extensive, curated database of ground truth electrophysiological recordings, displaying results interactively on continuously updating website. | Validating automated neural spike sorters, electrophysiological recordings, spike sorting codes, spike sorting analysis, OpenBehavior |
is listed by: OpenBehavior is related to: Spike Forest project |
DOI:10.7554/elife.55167 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/spikeforest/ | SCR_021532 | SpikeForest, SpikeForest v2 | 2026-02-11 11:00:08 | 1 | |||||||
|
LocoWhisk project Resource Report Resource Website 1+ mentions |
LocoWhisk project (RRID:SCR_021430) | project portal, portal, instrument resource, data or information resource | Portable behavioural set up that incorporates both gait analysis (using pedobarograph) and whisker movements (using high speed video camera and infrared light source).Automatically records both whisker and gait information and provides added statistical tools to analyse data. LocoWhisk system includes ARTv2 software for simultaneous measurement of locomotion behaviours and whisker movements. | Simultaneous measurement, locomotion behaviours, whisker movements, rodent behaviour, OpenBehavior, Instrument | is listed by: OpenBehavior | DOI:10.1016/j.jneumeth.2019.108440 | Free, Freely available | SCR_021430 | LocoWhisk | 2026-02-11 11:00:06 | 1 | ||||||||
|
OpenFeeder Resource Report Resource Website |
OpenFeeder (RRID:SCR_021552) | project portal, portal, instrument resource, data or information resource | Project related to studying reward and feeding behavior. Provides open source automatic feeding system that can be customized for food types from seeds to pellets.System integrates plexiglass tubes, Arduino Uno, motor driver, and piezo sensor to reliably deliver accurate amounts of food, and can also be built using 3D printed parts. | Instrument, automatic feeding system, customized for food types, plexiglass tubes, Arduino Uno, motor driver, piezo sensor, deliver accurate amounts of food, 3D printed parts, OpenBehavior | is listed by: OpenBehavior | DOI:10.1016/j.ohx.2016.09.001 | Free, Freely available | SCR_021552 | 2026-02-11 11:00:08 | 0 | |||||||||
|
ToneBox Resource Report Resource Website |
ToneBox (RRID:SCR_021548) | project portal, portal, instrument resource, data or information resource | Project related to auditory behavioral task data collection.Provided high throughput operant conditioning in mouse homecage system was developed by University of Maryland,College Park, scientists.Automated system for training up to hundreds of mice in auditory behavioral task features custom Matlab GUI running on desktop which connects to Raspberry Pi to administer auditory stimuli from USB soundcard and collects auditory data as well as licking data from water spout with commercially available capacitive sensors. Parts list and build instructions are readily available from paper and associated GitHub repository. | Instrument, auditory behavioral task, automated system, training mice, auditory behavioral task, OpenBehavior |
is listed by: OpenBehavior has parent organization: University of Maryland; Maryland; USA |
DOI:10.1523/eneuro.0121-19.2019 | Free, Freely available | SCR_021548 | 2026-02-11 11:00:08 | 0 | |||||||||
|
Capactive Touch Sensor project Resource Report Resource Website |
Capactive Touch Sensor project (RRID:SCR_021486) | project portal, portal, instrument resource, data or information resource | Project related to accurately counting and monitoring the behavior of organisms.Provides open source capacitive touch sensing system.Capacitive sensors are positioned to readily detect direct physical touches from rodent under investigation. Device,designed around capacitive touch sensor MPR121,accurately counts and monitors behavior of organisms. | Capacitive touch sensing system, capacitive sensor, detect direct physical touch, rodent touch, capacitive touch sensor, MPR121 sensor, accurate count, organism behavior monitoring, OpenBehavior, Instrument | is listed by: OpenBehavior | DOI:10.1016/j.mex.2020.101024 | Free, Freely available | SCR_021486 | Capactive Touch Sensor | 2026-02-11 11:00:07 | 0 | ||||||||
|
Two Armed Bandit Task project Resource Report Resource Website 1+ mentions |
Two Armed Bandit Task project (RRID:SCR_021483) | 2ABT | project portal, portal, instrument resource, data or information resource | Project related to training mice on task that requires continued updating of action/outcome relationships. Behavioral project includes task protocol and corresponding build instructions.Open source behavioral box used to train mice on task that requires continued updating of action/outcome relationships. Permits investigation of motivated behavior that requires flexible relationships between sensory stimuli and motor action. Project provided by Harvard Medical School scientists. | Behavioral box, train mice, action continued updating, outcome relationships updating, motivated behavior investigation, flexible relationships, sensory stimuli, motor action, OpenBehavior, Instrument |
is listed by: OpenBehavior has parent organization: Harvard Medical School; Massachusetts; USA |
Free, Freely available | SCR_021483 | Two Armed Bandit Task | 2026-02-11 11:00:16 | 2 | ||||||||
|
FinchScope project Resource Report Resource Website |
FinchScope project (RRID:SCR_021484) | project portal, portal, instrument resource, data or information resource | Project related to fluorescent imaging. Provides single photon fluorescent imaging microscope systems. System includes modular in vivo all optical neurophysiology rigs with transparent hardware, and acquisition and analysis software.Provide designs for 3D printed, lightweight, wireless capable microscope and motorized commutator, designed for multi month monitoring neural activity of zebra finches while they sing their courtship songs. Adapted for rodents and birds such as canaries. | Single photon, fluorescent imaging, microscope systems, OpenBehavior, Instrument | is listed by: OpenBehavior | DOI:10.1088/1741-2552/aa6806 | Free, Freely available | SCR_021484 | FinchScope | 2026-02-11 11:00:09 | 0 | ||||||||
|
UCLA Miniscope project Resource Report Resource Website 1+ mentions |
UCLA Miniscope project (RRID:SCR_021480) | project portal, portal, instrument resource, data or information resource | Project related to fluorescence imaging to record neural activity in awake, freely behaving mice.Provided system is developed by UCLA scientists. Miniscope system includes Miniscope with single, flexible coaxial cable to carry power, control signals, and imaging data to open source Data Acquisition hardware and software. Open source miniature fluorescence microscope uses wide-field fluorescence imaging to record neural activity in awake, freely behaving mice. | Miniature fluorescence microscope, wide field fluorescence imaging, record neural activity, activity record, OpenBehavior, Instrument |
is listed by: OpenBehavior is related to: E-Scope has parent organization: University of California at Los Angeles; California; USA |
SCR_021480 | UCLA Miniscope | 2026-02-11 11:00:09 | 2 | ||||||||||
|
Quantifying Animal Movement from Pre-recorded Videos Resource Report Resource Website |
Quantifying Animal Movement from Pre-recorded Videos (RRID:SCR_021515) | STL | software application, image analysis software, software resource, software toolkit, data processing software, image processing software | Software toolbox for visualizing and quantifying movement from pre-recorded videos.Used for summarizing animal movement data as single image ( spectral time lapse algorithm) as well as automate analysis of animal movement data. | Visualizing movement, quantifying movement, pre-recorded videos movement, summarizing animal movement data, single image, automate analysis, animal movement data, movement tracking, path analysis, video visualization, video summarization, image analysis, OpenBehavior |
is listed by: OpenBehavior is related to: Quantifying Animal Movement from Pre-recorded Videos project |
DOI:10.12688/f1000research.3-19.v1 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/offline-behavior-video-analysis/ | SCR_021515 | Spectral Time Lapse, STL Toolbox | 2026-02-11 11:00:17 | 0 | ||||||
|
Platform for Acoustic STArtle Resource Report Resource Website |
Platform for Acoustic STArtle (RRID:SCR_021516) | ratPASTA | software application, software resource, software toolkit, data visualisation software, data processing software | Software package for processing and visualising data from startle experiments in rodents or experiments measuring grip strength in rodents. | Startle experiments, rodent, experiments measuring rodents grip strength, OpenBehavior |
is listed by: OpenBehavior is related to: Platform for Acoustic STArtle project |
DOI:10.1038/s41598-021-82710-6 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/pasta/ https://github.com/ikodvanj/ratPASTA/ |
SCR_021516 | Platform for Acoustic STArtle | 2026-02-11 11:00:09 | 0 | ||||||
|
FaceMap Resource Report Resource Website 10+ mentions |
FaceMap (RRID:SCR_021513) | software resource, software application, data processing software, data analysis software | Software toolbox for unsupervised video analysis of rodent behavior.Used for videographic processing of head fixed rodent behavior. | Unsupervised video analysis, rodent behavior, videographic processing, head fixed rodent behavior, head fixed rodent, OpenBehavior |
is listed by: OpenBehavior is related to: FaceMap project |
Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/facemap/ | SCR_021513 | 2026-02-11 11:00:07 | 19 | |||||||||
|
Skinner Box Resource Report Resource Website |
Skinner Box (RRID:SCR_021514) | software application, software resource, data analysis software, data processing software, data acquisition software | Software tool for data logging and analysis. | Open Skinner Box, data logging, data analysis, behavioral system, OpenBehavior |
is listed by: OpenBehavior is related to: Skinner Box project |
Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/open-skinner-box/ | SCR_021514 | 2026-02-11 11:00:08 | 0 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the nidm-terms Resources search. From here you can search through a compilation of resources used by nidm-terms and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that nidm-terms has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on nidm-terms then you can log in from here to get additional features in nidm-terms such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into nidm-terms you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
