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http://purl.bioontology.org/ontology/STY

Ontology of semantic types.

Proper citation: Semantic Types Ontology (RRID:SCR_010425) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/SIO

Ontology that provides a simple, integrated upper level ontology (types, relations) for consistent knowledge representation across physical, processual and informational entities. It provides vocabulary for the Bio2RDF (http://bio2rdf.org) and SADI (http://sadiframework.org) projects.

Proper citation: Semanticscience Integrated Ontology (RRID:SCR_010427) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/ONTODM-CORE

Generic ontology for the domain of data mining that includes the information processing processes that occur in the domain of data mining, participants in the processes and their specifications. OntoDM is highly transferable and extendable due to its adherence to accepted standards, and compliance with existing ontology resources. The generality in scope allows wide number of applications of the ontology, such as semantic annotation of data mining scenarios, ontology based support for QSARs, etc.

Proper citation: Ontology of Core Data Mining Entities (RRID:SCR_010393) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/PEDTERM

Terms associated with pediatrics, representing information related to child health and development from pre-birth through 21 years of age; contributed by the National Institute of Child Health and Human Development.

Proper citation: Pediatric Terminology (RRID:SCR_010395) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/OOEVV

Ontology that provides a lightweight representation of the variables used to measure experimental properties and the measurement scales that form the complex data types supporting that data. Many different variables measure the same thing, here they use a lightweight representation driven by a small number of classes and a large number of variables to focus only on providing a vocabulary of variables that may be extended for consolidation to standardized variables for specific things and functions to map between values from different measurements scales. They use the base ontology description to provide a very lightweight representation of the basic elements of an experimental design and they use views to instantiate it for specific domains.

Proper citation: Ontology of Experimental Variables and Values (RRID:SCR_010396) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/ONTODT

Ontology that contains entities such as: datatype, datatype generator, datatype quality and others giving the possibility to represent arbitrary complex datatypes. This is an important fact for a general data mining ontology that wants to represent and query over modelling algorithms for mining structured data. The ontology was first developed under the OntoDM (Ontology of Data Mining, http://kt.ijs.si/panovp/OntoDM) ontology, but for generality and reuse purpose it was decided to export it as a separate ontology. Additionaly, the OntoDT ontology is based on and ISO/IEC 11404 (http://www.iso.org/iso/catalogue_detail.htm?csnumber=39479) standard and can be reused used independently by any domain ontology that requires representation and reasoning about general purpose datatypes.

Proper citation: Ontology of General Purpose Datatypes (RRID:SCR_010397) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/ONTOMA

Ontology for common concepts for communication between traditional medicine and western medicine. (In French)

Proper citation: Ontology of Alternative Medicine French (RRID:SCR_010390) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/OGMD

Ontology including the disease names, phenotypes and their classifications involved in Glucose Metabolism Disorder, Diabetes. (OBO and OWL format are available in sourceforge.)

Proper citation: Ontology of Glucose Metabolism Disorder (RRID:SCR_010399) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/TADS

Anatomy Ontology of the Tick, Families: Ixodidae, Argassidae

Proper citation: Tick Gross Anatomy Ontology (RRID:SCR_010433) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/TM-CONST

Ontology of the value set for the constitution property of the International Classification of Traditional Medicine (ICTM).

Proper citation: Traditional Medicine Constitution Value Set (RRID:SCR_010435) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/TM-SIGNS-AND-SYMPTS

Ontology of the value set for the Signs and Symptoms property of the International Classification of Traditional Medicine (ICTM).

Proper citation: Traditional Medicine Signs and Symptoms Value Set (RRID:SCR_010438) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/UNITSONT

A small ontology for the units of measurement developed during the development of the Sleep Domain Ontology (SDO). It supports the use of SDO within the PhysioMIMI application.

Proper citation: Units Ontology (RRID:SCR_010441) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/UO

Metrical units ontology for use in conjunction with PATO

Proper citation: Units of Measurement Ontology (RRID:SCR_010442) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/NIFSUBCELL

Ontology that contains cell parts and subcellular structures from SAO-CORE and Gene Ontology Cellular Component (GO-CC). http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Subcellular.owl

Proper citation: NIF Subcellular Ontology (RRID:SCR_010366) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/NMR

Metabolomics Standards Initiative-sanctioned ontology, created within the COSMOS EU project, to support the nmrML data standard for nuclear magnetic resonance data in metabolomics with meaningful raw data descriptors.

Proper citation: NMR-Instrument Component of Metabolomics Investigations Ontology (RRID:SCR_010367) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/HOM

Ontology that represents concepts related to homology, as well as other concepts used to describe similarity and non-homology.

Proper citation: Ontology of Homology and Related Concepts in Biology (RRID:SCR_010400) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/RXNO

Ontology that connects organic name reactions such as the Diels-Alder cyclization and the Cannizzaro reaction to their roles in an organic synthesis.

Proper citation: Name Reaction Ontology (RRID:SCR_010368) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/LDA

Ontology of language terms used in the domain of autism available for consultation and sharing. The language terms were obtained via text mining and automatic retrieval of terms from the corpus of PubMed abstracts.

Proper citation: Ontology of Language Disorder in Autism (RRID:SCR_010401) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/PDO

An ontology for describing both human infectious disease caused by bacteria and the disease that is related to bacterial infection.

Proper citation: Pathogenic Disease Ontology (RRID:SCR_010405) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/NDDF

Ontology of the National Drug Data File plus source vocabulary

Proper citation: National Drug Data File (RRID:SCR_010371) Copy   

•   Source: SciCrunch Registry