Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
SNP-HWE Resource Report Resource Website 1+ mentions |
SNP-HWE (RRID:SCR_008555) | SNP-HWE | software application, software resource | Software application for a fast exact Hardy-Weinberg Equilibrium test for SNPs (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran, c, c++, r | is listed by: Genetic Analysis Software | nlx_154645 | SCR_008555 | 2026-02-15 09:19:32 | 4 | |||||||||
|
PEDPEEL Resource Report Resource Website |
PEDPEEL (RRID:SCR_008436) | PEDPEEL | software application, software resource | Software program that prepares pedigree data for calculation of Elston-Stewarts'' likelihood function. It finds an optimal way to peel a pedigree and returns text file containing 7 description arrays (entry from Genetic Analysis Software) | gene, genetic, genomic, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
nlx_154524, biotools:pedpeel | https://bio.tools/pedpeel | SCR_008436 | 2026-02-15 09:19:49 | 0 | ||||||||
|
GENOME Resource Report Resource Website 50+ mentions |
GENOME (RRID:SCR_008949) | GENOME | software application, software resource | Software application to simulate sequences drawn from a population under the Wright-Fisher neutral model. The purpose of this program is to simulate sequences on the whole genome scale within practical time. (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, unix, solaris, linux, ms-windows | is listed by: Genetic Analysis Software | nlx_154347 | SCR_008949 | 2026-02-15 09:20:00 | 63 | |||||||||
|
ET-TDT Resource Report Resource Website |
ET-TDT (RRID:SCR_007657) | ET-TDT | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, ms-dos | is listed by: Genetic Analysis Software | nlx_154304 | SCR_007657 | Evolutionary Tree - Transmission Disequilibrium Test | 2026-02-15 09:19:39 | 0 | ||||||||
|
FASTMAP (1) Resource Report Resource Website |
FASTMAP (1) (RRID:SCR_008346) | FASTMAP (1) | software application, software toolkit, software resource | Fluorescent allele-calling software toolkit: a computer software for fully automated microsatellite genotyping. (entry from Genetic Analysis Software) | gene, genetic, genomic, unix, macos, matlab, programming environment is required. | is listed by: Genetic Analysis Software | nlx_154310 | SCR_008346 | Fluorescent Allele-calling Software Toolkit: Microsatellite Automation Package | 2026-02-15 09:19:30 | 0 | ||||||||
|
TAGSNP Resource Report Resource Website 50+ mentions |
TAGSNP (RRID:SCR_008623) | TAGSNP | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran90 | is listed by: Genetic Analysis Software | nlx_154671 | SCR_008623 | 2026-02-15 09:19:52 | 69 | |||||||||
|
2DMAP Resource Report Resource Website |
2DMAP (RRID:SCR_009036) | 2DMAP | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. Software application for constructing 2-d crossover-based map. | gene, genetic, genomic, ms-dos | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154001 | SCR_009036 | 2026-02-15 09:20:01 | 0 | ||||||||
|
ADMIXMAP Resource Report Resource Website 10+ mentions |
ADMIXMAP (RRID:SCR_009035) | ADMIXMAP | software application, software resource | General-purpose program for modelling admixture, using marker genotypes and trait data on a sample of individuals from an admixed population (such as African-Americans), where the markers have been chosen to have extreme differentials in allele frequencies between two or more of the ancestral populations between which admixture has occurred. The main difference between ADMIXMAP and classical programs for estimation of admixture such as ADMIX is that ADMIXMAP is based on a multilevel model for the distribution of individual admixture in the population and the stochastic variation of ancestry on hybrid chromosomes. This makes it possible to model the associations of ancestry between linked marker loci, and the association of a trait with individual admixture or with ancestry at a linked marker locus. (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, linux, ms-windows, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
nlx_153999, biotools:admixmap | https://bio.tools/admixmap | SCR_009035 | Admixture mapping | 2026-02-15 09:19:37 | 19 | |||||||
|
HAPLO 2 Resource Report Resource Website 1+ mentions |
HAPLO 2 (RRID:SCR_009059) | HAPLO 2 | software application, software resource | Software application that estimates frequencies of multi-site haplotypes using the EM algorithm (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran, dec vax | is listed by: Genetic Analysis Software | nlx_154040 | SCR_009059 | 2026-02-15 09:19:56 | 1 | |||||||||
|
UNPHASED Resource Report Resource Website 100+ mentions |
UNPHASED (RRID:SCR_009056) | UNPHASED | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. A suite of programs for association analysis of multilocus haplotypes from unphased genotype data. These include TDTPHASE for case-parent trios, COCAPHASE for case/control data, QTPHASE for quantitative traits in unrelateds, PDTPHASE for general pedigrees, and QPDTPHASE for quantitative traits in general pedigrees. Features include global and individual haplotype tests, main effects and conditional tests, grouping of rare haplotypes, pairwise comparisons of haplotype risk, flexible permutation procedures and calculation of LD measures. | gene, genetic, genomic, c++, java, unix, solaris, linux, ms-windows | is listed by: Genetic Analysis Software | PMID:10739137 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154037 | http://www.mrc-bsu.cam.ac.uk/personal/frank/software/unphased/ | SCR_009056 | 2026-02-15 09:19:37 | 125 | ||||||
|
POWER Resource Report Resource Website 500+ mentions |
POWER (RRID:SCR_009057) | POWER | software application, software resource | Windows-based program for computation of sample size and power for binary outcome studies (case-control and cohort studies) based on a logistic-like regression model with one covariate or two covariates (e.g., gene-exposure interactions). (entry from Genetic Analysis Software) | gene, genetic, genomic, ms-window | is listed by: Genetic Analysis Software | nlx_154038 | http://dceg.cancer.gov/POWER/ | SCR_009057 | 2026-02-15 09:20:02 | 584 | ||||||||
|
DHSMAP Resource Report Resource Website 1+ mentions |
DHSMAP (RRID:SCR_009160) | DHSMAP | software application, software resource | Software application for fine-mapping of qualitative traits by linkage disequilibrium. Given a set of marker haplotypes or genotypes from affected individuals, haplotypes or genotypes from appropriately selected controls, and a genetic map of the markers at which both sets of individuals are typed, DHSMAP estimates the location of the trait-associated variant by maximum likelihood or maximum quasi-likelihood. (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, unix, solaris, linux | is listed by: Genetic Analysis Software | nlx_154282 | SCR_009160 | Decay of Haplotype Sharing MAPping software | 2026-02-15 09:19:58 | 1 | ||||||||
|
AMELIA Resource Report Resource Website 100+ mentions |
AMELIA (RRID:SCR_009119) | AMELIA | software application, software resource | Software application that employs allele matching to analyse the effects of rare variants within a specific locus. There is increasing evidence that rare variants play a role in some complex traits, but their analysis is not straightforward. Locus-based tests become necessary due to low power in rare variant single-point association analyses. In addition, variant quality scores are available for sequencing data, but are rarely taken into account. To enable this analysis, AMELIA has been developed as an allele-matching approach that is robust to the presence of both directions of effect for variants within the locus analysed. (entry from Genetic Analysis Software) | gene, genetic, genomic, r, unix, linux | is listed by: Genetic Analysis Software | nlx_154222 | SCR_009119 | Allele Matching Empirical Locus-specific Integrated Association test | 2026-02-15 09:19:57 | 121 | ||||||||
|
ALLEGRO Resource Report Resource Website 50+ mentions |
ALLEGRO (RRID:SCR_009116) | ALLEGRO | software application, software resource | Software application that is a faster version of GENEHUNTER and Allegro 1.2 (several degrees of increase of speed, can handle bigger families, up to 50 bits) (entry from Genetic Analysis Software) | gene, genetic, genomic, c++ | is listed by: Genetic Analysis Software | nlx_154217 | SCR_009116 | 2026-02-15 09:19:38 | 63 | |||||||||
|
SIBSIM Resource Report Resource Website |
SIBSIM (RRID:SCR_009113) | SIBSIM | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. Software application that simulates either genotype and/or quantitative phenotype data in family structures in a modern, easy to use and highly scalable way. It is based on XML, completely written in C++ and published under the GNU General Public License. | gene, genetic, genomic, c++, xml, unix | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154212 | SCR_009113 | 2026-02-15 09:20:03 | 0 | ||||||||
|
IGG Resource Report Resource Website 1+ mentions |
IGG (RRID:SCR_009114) | IGG | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. | gene, genetic, genomic, java, web-based | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154214 | http://bioinfo.hku.hk:13080/iggweb/ | SCR_009114 | Integrate Genotypes for genome-wide Genetic studies | 2026-02-15 09:20:04 | 2 | ||||||
|
QTLNETWORK Resource Report Resource Website 50+ mentions |
QTLNETWORK (RRID:SCR_009078) | QTLNETWORK | software application, software resource | Software package for mapping and visualizing the genetic architecture underlying complex traits for experimental populations derived from a cross between two inbred lines. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | PMID:18202029 PMID:20593516 |
nlx_154076 | SCR_009078 | 2026-02-15 09:20:03 | 50 | ||||||||
|
TREELD Resource Report Resource Website |
TREELD (RRID:SCR_009111) | TREELD | software application, software resource | Free software tool for mapping complex trait loci. TreeLD performs a multipoint LD-analysis by inferring the ancestry of a genomic region and analyzing this ancestry for signals of disease mutations. The generated likelihoods can be used to test for the presence of a disease locus and to fine-map its location, providing a point estimate and a credible region. Furthermore, the package provides a novel way of visualizing the association signal in a sample. TreeLD is designed for high-density SNP haplotypes and can be applied to case-control data, TDT trio data and quantitative trait data. (entry from Genetic Analysis Software) | gene, genetic, genomic, unix, solaris, linux, ms-windows, (95/98/nt/2000/xp) | is listed by: Genetic Analysis Software | Free | nlx_154210 | SCR_009111 | 2026-02-15 09:19:57 | 0 | ||||||||
|
MIXSCORE Resource Report Resource Website 1+ mentions |
MIXSCORE (RRID:SCR_009076) | MIXSCORE | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. Software application using a method for combining SNP association and admixture association statistics to increase power in GWAS in admixed populations. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154074 | SCR_009076 | 2026-02-15 09:19:37 | 6 | ||||||||
|
POWQ Resource Report Resource Website |
POWQ (RRID:SCR_009077) | POWQ | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 9, 2023. A user-friendly, graphical package for power evaluation and enhancement planning through variance component linkage analysis in a multipoint framework. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | PMID:16585065 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154075 | SCR_009077 | 2026-02-15 09:20:02 | 0 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the nidm-terms Resources search. From here you can search through a compilation of resources used by nidm-terms and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that nidm-terms has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on nidm-terms then you can log in from here to get additional features in nidm-terms such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into nidm-terms you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
