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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Ratcave project Resource Report Resource Website |
Ratcave project (RRID:SCR_021555) | data or information resource, portal, project portal | Portal provides open source, cross platform Python library that adds 3D stimulus support to all OpenGL based 2D Python stimulus libraries. Ratcave comes with resources including basic 3D object primitives and wide range of 3D light effects. Intuitive object oriented interface allows for all objects, which include meshes, lights, and cameras, can be repositioned, rotated, and scaled. | Cognitive psychology, stimuli to subjects, response record, Python, 3D graphics library, OpenBehavior |
is listed by: OpenBehavior is related to: Ratcave |
DOI:10.3758/s13428-019-01245-x | Free, Freely available | SCR_021555 | Ratcave | 2026-02-12 09:47:22 | 0 | ||||||||
|
M-Track project Resource Report Resource Website |
M-Track project (RRID:SCR_021433) | data or information resource, portal, project portal | Project related to tracking movement of labelled paws in grooming and freely behaving mice. Provides software toolbox for automated detection of forepaw trajectories in mice. | Automated detection, forepaw trajectories, labelled forepaw, freely behaving mice, freely behaving rats, simultaneous trackcking individual paws, movement, spontaneous grooming episodes, OpenBehavior |
is listed by: OpenBehavior is related to: M-Track |
DOI:10.1371/journal.pcbi.1005115 | Free, Freely available | SCR_021433 | M-Track | 2026-02-12 09:47:48 | 0 | ||||||||
|
Pathfinder project Resource Report Resource Website |
Pathfinder project (RRID:SCR_021447) | data or information resource, portal, project portal | Project to detect spatial navigation behavior in animals.Provides open source software for analyzing spatial navigation search strategies developed by University of British Columbia scientists. | Analyzing spatial navigation search strategies, spatial navigation, search strategies, OpenBehavior |
is listed by: OpenBehavior is related to: Pathfinder has parent organization: University of British Columbia; British Columbia; Canada |
DOI:10.1101/715961 | Free, Freely available | SCR_021447 | Pathfinder | 2026-02-12 09:47:12 | 0 | ||||||||
|
AutoPilot project Resource Report Resource Website |
AutoPilot project (RRID:SCR_021448) | data or information resource, portal, project portal | Project related to behavioral experiments.Provides software Python framework for running behavioral experiments designed by University of Oregon scientists. | Running behavioral experiments, automating behavioral experiments, Raspberry Pis, design experiments modules, OpenBehavior |
is listed by: OpenBehavior is related to: AutoPilot has parent organization: University of Oregon; Oregon; USA |
DOI:10.1101/807693 | Free, Freely available | SCR_021448 | AutoPilot | 2026-02-12 09:47:19 | 0 | ||||||||
|
Bonsai project Resource Report Resource Website |
Bonsai project (RRID:SCR_021443) | data or information resource, portal, project portal | Project related to composing reactive and asynchronous data streams coming from video cameras, microphones, electrophysiology systems or data acquisition boards. Provides open source software tool as visual language for reactive programming. | Reactive programming visual language, composing reactive data streams, composing asynchronous data streams, video cameras data, microphones data, electrophysiology systems data, data acquisition boards, OpenBehavior |
is listed by: OpenBehavior is related to: Bonsai |
DOI:10.3389/fninf.2015.00007 | Free, Freely available | SCR_021443 | Bonsai | 2026-02-12 09:47:12 | 0 | ||||||||
|
DeepBehavior project Resource Report Resource Website |
DeepBehavior project (RRID:SCR_021387) | data or information resource, portal, project portal | Project related to behavior tracking and analysis. Provides deep learning toolbox that automates taking high speed quality video to track behavior in rodents and humans. | Track behavior, analyze and track behavior, rodent, human, automated analysis, imaging data, OpenBehavior |
is listed by: OpenBehavior is related to: DeepBehavior |
DOI:10.3389/fnsys.2019.00020 | Free, Freely available | SCR_021387 | DeepBehavior | 2026-02-12 09:47:47 | 0 | ||||||||
|
Worm Behavior Platform project Resource Report Resource Website |
Worm Behavior Platform project (RRID:SCR_021420) | data or information resource, portal, project portal | Project related to sharing worm tracking data and analysis routines.Open access repository for storing, accessing, filtering data and analysis. | Worm behavior data analysis, worm behavior data sharing, worm behavior data, Caenorhabditis elegans behavioral data, Worm tracker Commons Object Notation, OpenBehavior |
is listed by: OpenBehavior is related to: Worm Behavior Platform |
DOI:10.1038/s41592-018-0112-1 | Free, Freely available | SCR_021420 | Worm Behavior Platform | 2026-02-12 09:47:18 | 0 | ||||||||
|
SLEAP, LEAP and MotionMapper project Resource Report Resource Website |
SLEAP, LEAP and MotionMapper project (RRID:SCR_021383) | data or information resource, portal, project portal | Collection of tools to do video analysis in behavioral neuroscience applications.Offers open source software tools including SLEAP, LEAP and MotionMapper. | Estimating positions, animal body parts, multi animal pose estimation, multi animal pose tracking, Princeton University, OpenBehavior |
is listed by: OpenBehavior is related to: MotionMapper is related to: Social LEAP is related to: Variational Embedding of Animal Motion is related to: BehaviorDEPOT has parent organization: Princeton University; New Jersey; USA |
Free, Freely available | SCR_021383 | LEAP and MotionMapper, SLEAP | 2026-02-12 09:47:47 | 0 | |||||||||
|
idtracker.ai project Resource Report Resource Website |
idtracker.ai project (RRID:SCR_021417) | data or information resource, portal, project portal | Project related to tracking individual animals in large collective groups.Provides algorithm and software for tracking individuals in large collectives of unmarked animals.Tracks animal identification and tracks when animals touch or cross paths in front of one another. | Python Video Annotator, animal identification tracking, animals touch tracking, tracking animal cross paths, OpenBehavior |
is listed by: OpenBehavior is related to: idtracker.ai |
DOI:10.1038/s41592-018-0295-5 | Free, Freely available | SCR_021417 | idtracker.ai | 2026-02-12 09:47:47 | 0 | ||||||||
|
Calcium ActiVity Explorer project Resource Report Resource Website |
Calcium ActiVity Explorer project (RRID:SCR_021419) | CAVE | data or information resource, portal, project portal | Project related to calcium imaging.Provide open source tool for combined analysis of head mounted calcium imaging and behavior. Used to analyze imaging data from head mounted microscopes simultaneously with behavioral data. | Head mounted calcium imaging, calcium imaging and behavior, calcium imaging, analyze imaging data, head mounted microscopes, behavioral data, OpenBehavior |
is listed by: OpenBehavior is related to: Calcium ActiVity Explorer |
DOI:10.3389/fnins.2018.00958 | Free, Freely available | SCR_021419 | Calcium ActiVity Explorer | 2026-02-12 09:47:12 | 0 | |||||||
|
ToxTrac project Resource Report Resource Website |
ToxTrac project (RRID:SCR_021424) | data or information resource, portal, project portal | Project related to high speed tracking of animals.Provides software tool for tracking organisms.Can handle one or several animals in one or several environments.Used for fish, insects, rodents, etc. | Tracking organisms, tracking fish, tracking insects, tracking rodents, behavior measurement, freely moving, OpenBehavior |
is listed by: OpenBehavior is related to: ToxTrac |
DOI:10.1111/2041-210x.12874 | Free, Freely available | SCR_021424 | ToxTrac | 2026-02-12 09:47:18 | 0 | ||||||||
|
BonZeb project Resource Report Resource Website |
BonZeb project (RRID:SCR_021388) | data or information resource, portal, project portal | Portal provides tools for investigating visuomotor integration specific to high speed kinematic tracking in small model organisms in closed loop experiments. University of Toronto scientists developed suite of Bonsai modules for specifically tracking and analyzing zebrafish movements and integrating these data with closed-loop experiments. BonZeb modules can also be used in an open-loop fashion for collecting, analyzing, and integrating data from multiple sources in real time, or from offline sources for batch processing of pre-recorded data. | Tacking and analyzing zebrafish movements, integrating zebrafish movements data with closed loop experiments, zebrafish movements, OpenBehavior |
is listed by: OpenBehavior is related to: BonZeb has parent organization: University of Toronto; Ontario; Canada |
Free, Freely available | SCR_021388 | BonZeb | 2026-02-12 09:47:19 | 0 | |||||||||
|
BrainGlobe project Resource Report Resource Website 1+ mentions |
BrainGlobe project (RRID:SCR_021481) | data or information resource, portal, project portal | Project is related to working with atlas data from multiple species on common platform.Provides collection of Python tools for working with atlas data from multiple species on common platform and for morphological analyses in systems neuroscience. | Atlas data from multiple species, atlas data on common platform, morphological analyses, systems neuroscience, OpenBehavior | is listed by: OpenBehavior | Free, Freely available | SCR_021481 | BrainGlobe | 2026-02-12 09:47:48 | 1 | |||||||||
|
Toolboxes for Spike and LFP Analysis project Resource Report Resource Website |
Toolboxes for Spike and LFP Analysis project (RRID:SCR_021478) | data or information resource, portal, project portal | Portal includes compared several toolboxes for spike and LFP analysis, connectivity analysis, dimensionality reduction, and generalized linear modeling. Discussion about major features of software available for Python and MATLAB including Brainstorm, Chronux, Elephant, FieldTrip, gramm, Spike Viewer, and SPIKY. They include succinct tables for assessing system and program requirements, quality of documentation and support, and data types accepted by each toolbox. | List of compared toolboxes for spike and LFP analysis, connectivity analysis, dimensionality reduction, generalized linear modeling, assessing system and program requirements, quality of documentation and support, data types accepted, OpenBehavior | is listed by: OpenBehavior | DOI:10.3389/fninf.2019.00057 | Free, Freely available | SCR_021478 | Toolboxes for Spike and LFP Analysis | 2026-02-12 09:47:20 | 0 | ||||||||
|
Scintillate project Resource Report Resource Website |
Scintillate project (RRID:SCR_021479) | data or information resource, portal, project portal | Project related to time series calcium imaging evaluation and pre-processing. Included open source graphical viewer for time series calcium imaging evaluation and pre-processing is provided by Swedish University scientists . | Image acquisition, time series calcium imaging evaluation, calcium imaging, |
is listed by: OpenBehavior is related to: Scintillate |
DOI:10.1016/j.jneumeth.2016.08.010 | Free, Freely available | SCR_021479 | Scintillate | 2026-02-12 09:47:13 | 0 | ||||||||
|
Wave Surfer project Resource Report Resource Website |
Wave Surfer project (RRID:SCR_021476) | data or information resource, portal, project portal | Project related to neurophysiology data acquisition and analysis.Included open source software application for neurophysiology data acquisition and analysis is provided by Howard Hughes Medical Institute Janelia Research Campus scientists. Program is based in MatLab, and evolved from earlier open source software package called Ephus. | Neurophysiology data acquisition, neurophysiology data analysis, neurophysiology data, MATLAB, OpenBehavior |
is listed by: OpenBehavior is related to: Wave Surfer |
Free, Freely available | SCR_021476 | Wave Surfer | 2026-02-12 09:47:19 | 0 | |||||||||
|
Automated Classification of Self-grooming in Mice project Resource Report Resource Website 1+ mentions |
Automated Classification of Self-grooming in Mice project (RRID:SCR_021597) | data or information resource, portal, project portal | Portal provides protocol that implements JAABA, open source machine learning based behavior detection system; motr, open-source mouse trajectory tracking software; and bonsai, open source system capable of streaming and recording video. Together they use these tools to process videos of mice performing grooming behaviors in variety of behavioral setups. | grooming behavior, behavior detection protocol, JAABA behavior detection system, motr mouse trajectory tracking software, bonsai streaming and recording video, OpenBehavior | is listed by: OpenBehavior | DOI:10.1016/j.jneumeth.2017.05.026 | Free, Freely available | SCR_021597 | Automated Classification of Self-grooming in Mice | 2026-02-12 09:47:14 | 1 | ||||||||
|
Calcium Imaging data Analysis project Resource Report Resource Website 1+ mentions |
Calcium Imaging data Analysis project (RRID:SCR_021477) | CaImAn | data or information resource, portal, project portal | Project related to calcium imaging.Provides software library, CaImAn, for one and two-photon Calcium Imaging data Analysis. | calcium imaging analysis, movie handling, motion correction, source extraction, spike deconvolution, result visualization, OpenBehavior |
is listed by: OpenBehavior is related to: Calcium Imaging data Analysis |
DOI:10.7554/elife.38173 | Free, Freely available | SCR_021477 | Calcium Imaging data Analysis | 2026-02-12 09:47:48 | 1 | |||||||
|
BonVision project Resource Report Resource Website |
BonVision project (RRID:SCR_021491) | data or information resource, portal, project portal | Project related to creating and controlling visual environments.Provided open source software package for creating and controlling visual environments was developed by University College London scientists. | Creating visual environments, controlling visual environments, Bonsai, 2D environment, 3D environments, OpenBehavior |
is listed by: OpenBehavior is related to: BonVision has parent organization: University College London; London; United Kingdom |
DOI:10.1101/2020.03.09.983775 | Free, Freely available | SCR_021491 | BonVision | 2026-02-12 09:47:13 | 0 | ||||||||
|
Open Source Whisking Video Database portal Resource Report Resource Website |
Open Source Whisking Video Database portal (RRID:SCR_021404) | data or information resource, portal, project portal | Portal provides shared database of videos featuring juvenile and adult male rats and adult male mice exploring stationary objects.This dataset includes wide variety of experimental conditions including genetic, pharmacological, and sensory deprivation interventions to explore how active sensing behavior is modulated by different factors. Database of high speed videos of whisking behavior in freely moving rodents.Open source high speed infrared videography database to study principles of active sensing in freely navigating rodents. | High speed videos, whisking behavior, freely moving rodents, infrared videography database, active sensing, OpenBehavior |
is listed by: OpenBehavior is related to: Open Source Whisking Video Database |
DOI:10.1093/gigascience/giy134 | Free, Freely available | SCR_021404 | 2026-02-12 09:47:47 | 0 |
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