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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Swiss Commission for Technology and Innovation Resource Report Resource Website 1+ mentions |
Swiss Commission for Technology and Innovation (RRID:SCR_010084) | CTI | government granting agency | SCR_010084 | Commission for Technology and Innovation CTI, Commission for Technology and Innovation, Swiss Commission for Technology Innovation, Swiss Commission for Technology and Innovation CTI | 2026-02-14 02:01:54 | 1 | ||||||||||||
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Computational Biology and Functional Genomics Laboratory at Harvard Resource Report Resource Website 100+ mentions |
Computational Biology and Functional Genomics Laboratory at Harvard (RRID:SCR_010240) | software resource | A computational biology laboratory that builds and redistributes genetic software tools. |
has parent organization: Harvard University; Cambridge; United States is parent organization of: GeneSigDB |
nlx_156871 | SCR_010240 | Quackenbush Lab | 2026-02-14 02:01:55 | 221 | ||||||||||
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ieeg.org Resource Report Resource Website 50+ mentions |
ieeg.org (RRID:SCR_010000) | data repository, storage service resource, data or information resource, service resource, database | Repository for EEG data. The International Epilepsy Electrophysiology Portal is a collaborative initiative funded by the National Institutes of Neurological Disease and Stroke. This initiative seeks to advance research towards the understanding of epilepsy by providing a platform for sharing data, tools and expertise between researchers. The portal includes a large database of scientific data and tools to analyze these datasets. | data sharing, FASEB list | Epilepsy | NINDS 1 U24 NS063930-01 | nlx_157297 | SCR_010000 | International Epilepsy Electrophysiology Portal, IEEG | 2026-02-14 02:01:53 | 51 | ||||||||
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ABMapper Resource Report Resource Website 1+ mentions |
ABMapper (RRID:SCR_010242) | ABMapper | software resource | A portable, easy-to-use package for spliced alignment, junction site detection, and reads mapping. The core module was written in C++ and wrapped in PERL scripts. | is listed by: OMICtools | OMICS_01238 | SCR_010242 | ABMapper: A suffix-array based spliced alignment tool | 2026-02-14 02:01:55 | 1 | |||||||||
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Upper-Level Cancer Ontology Resource Report Resource Website |
Upper-Level Cancer Ontology (RRID:SCR_010443) | CANONT | data or information resource, ontology, controlled vocabulary | Upper-level ontology for cancer. | obo | is listed by: BioPortal | Cancer | nlx_157620 | SCR_010443 | 2026-02-14 02:01:58 | 0 | ||||||||
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Gene Expression Ontology Resource Report Resource Website 1+ mentions |
Gene Expression Ontology (RRID:SCR_010326) | GEXO | data or information resource, ontology, controlled vocabulary | An application ontology for the domain of gene expression. The ontology integrates fragments of GO and MI with data from GOA, IntAct, UniProt, NCBI, KEGG and orthology relations. | obo | is listed by: BioPortal | nlx_157413 | SCR_010326 | 2026-02-14 02:01:57 | 6 | |||||||||
|
Web-Service Interaction Ontology Resource Report Resource Website |
Web-Service Interaction Ontology (RRID:SCR_010448) | WSIO | data or information resource, ontology, controlled vocabulary | Ontology that enables automated interaction with more complex Web services that are typical for example within life sciences. WSIO is however independent of the application domain and relevant for both SOAP and REST Web services, and for batch execution engines in general. If the interaction scenario with a Web service is nontrivial (and incorporates session handling), annotation with WSIO concepts will enable automatic generation of client programs, scripts, or interactive applications with a graphical user interface. WSIO also enables automation of different ways of data transfer and data un-/compression or en-/decoding. They strongly discourage providers from developing complex interaction and data-transfer/compression scenarios, however when needed, WSIO may enable smooth automated interaction with them. Future versions will support more interaction scenarios. WSIO aims to serve also as a means to standardise the complex interaction scenarios primarily within both SOAP and REST Web services, and secondarily to apply also to batch execution infrastructure in general. | obo | is listed by: BioPortal | nlx_157629 | SCR_010448 | 2026-02-14 02:02:00 | 0 | |||||||||
|
General Formal Ontology Resource Report Resource Website |
General Formal Ontology (RRID:SCR_010328) | GFO | data or information resource, ontology, controlled vocabulary | A top-level ontology integrating objects and processes. | owl | is listed by: BioPortal | nlx_157416 | http://www.onto-med.de/ontologies/gfo/ | SCR_010328 | 2026-02-14 02:01:44 | 0 | ||||||||
|
Wheat Trait Ontology Resource Report Resource Website |
Wheat Trait Ontology (RRID:SCR_010449) | CO-WHEAT | data or information resource, ontology, controlled vocabulary | Ontology that defines traits of the International Wheat Information System (IWIS) database and wheat descriptor. | obo | is listed by: BioPortal | nlx_157630 | SCR_010449 | 2026-02-14 02:02:00 | 0 | |||||||||
|
General Formal Ontology for Biology Resource Report Resource Website |
General Formal Ontology for Biology (RRID:SCR_010329) | GFO-BIO | data or information resource, ontology, controlled vocabulary | A biological core ontology built on the General Formal Ontology. | owl | is listed by: BioPortal | nlx_157417 | http://www.onto-med.de/ontologies/gfo-bio/ | SCR_010329 | 2026-02-14 02:01:56 | 0 | ||||||||
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XEML Environment Ontology Resource Report Resource Website |
XEML Environment Ontology (RRID:SCR_010450) | XEO | data or information resource, ontology, controlled vocabulary | Ontology to help plant scientists in documenting and sharing metadata describing the abiotic environment. | obo | is listed by: BioPortal | nlx_157631 | SCR_010450 | 2026-02-14 02:01:46 | 0 | |||||||||
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Genome Component Ontology Resource Report Resource Website 1+ mentions |
Genome Component Ontology (RRID:SCR_010330) | GCO | data or information resource, ontology, controlled vocabulary | Ontology to define the abstract division of the total genetic information of an organism by its physical separation into different components, thereby providing a high level reference point to which more specific descriptions of the characteristics of these components can be linked. | owl | is listed by: BioPortal | nlx_157418 | SCR_010330 | 2026-02-14 02:01:57 | 1 | |||||||||
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Situation-Based Access Control Ontology Resource Report Resource Website |
Situation-Based Access Control Ontology (RRID:SCR_010429) | SITBAC | data or information resource, ontology, controlled vocabulary | Ontology of context-based healthcare access-control policies. | owl | is listed by: BioPortal | nlx_157588 | SCR_010429 | 2026-02-14 02:01:59 | 0 | |||||||||
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Ontology for Newborn Screening Follow-up and Translational Research Resource Report Resource Website |
Ontology for Newborn Screening Follow-up and Translational Research (RRID:SCR_010389) | ONSTR | data or information resource, ontology, controlled vocabulary | Application ontology covering the domain of newborn screening, follow-up and translational research pertaining to patients diagnosed with inheritable and congenital diseases mainly identified through newborn dried blood spot screening. ONSTR is a central component of the project Newborn Screening Follow-up Data Integration Collaborative (NBSDC), https://nbsdc.org. ONSTR uses the Basic Formal Ontology v2 (BFO2, v2012-07-20) as top-level ontology and extends the classes imported from OBO Foundry ontologies and candidate ontologies. | owl, newborn | is listed by: BioPortal | Inheritable disease, Congenital disease | nlx_157520 | SCR_010389 | 2026-02-14 02:01:57 | 0 | ||||||||
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Santa Barbara Coastal Observation Ontology Resource Report Resource Website |
Santa Barbara Coastal Observation Ontology (RRID:SCR_010424) | OBOE-SBC | data or information resource, ontology, controlled vocabulary | Extensible Observation Ontology for the Santa Barbara Coastal Long Term Ecological Research project (SBC-LTER). It extends core concepts defined in the OBOE suite that are particular to the Santa Barbara Coastal Long Term Ecological Research project''s data collection activities. These include specific measurement protocols, sites, etc. This is meant as a case study ontology for the Semtools project. | owl | is listed by: BioPortal | nlx_157582 | SCR_010424 | 2026-02-14 02:01:46 | 0 | |||||||||
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Semantic Types Ontology Resource Report Resource Website |
Semantic Types Ontology (RRID:SCR_010425) | STY | data or information resource, ontology, controlled vocabulary | Ontology of semantic types. | umls | is listed by: BioPortal | nlx_157584 | SCR_010425 | 2026-02-14 02:01:58 | 0 | |||||||||
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Semanticscience Integrated Ontology Resource Report Resource Website 1+ mentions |
Semanticscience Integrated Ontology (RRID:SCR_010427) | SIO | data or information resource, ontology, controlled vocabulary | Ontology that provides a simple, integrated upper level ontology (types, relations) for consistent knowledge representation across physical, processual and informational entities. It provides vocabulary for the Bio2RDF (http://bio2rdf.org) and SADI (http://sadiframework.org) projects. | owl |
is used by: DisGeNET is listed by: BioPortal |
nlx_157586 | SCR_010427 | 2026-02-14 02:01:59 | 1 | |||||||||
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Ontology of Core Data Mining Entities Resource Report Resource Website |
Ontology of Core Data Mining Entities (RRID:SCR_010393) | ONTODM-CORE | data or information resource, ontology, controlled vocabulary | Generic ontology for the domain of data mining that includes the information processing processes that occur in the domain of data mining, participants in the processes and their specifications. OntoDM is highly transferable and extendable due to its adherence to accepted standards, and compliance with existing ontology resources. The generality in scope allows wide number of applications of the ontology, such as semantic annotation of data mining scenarios, ontology based support for QSARs, etc. | owl | is listed by: BioPortal | nlx_157526 | SCR_010393 | 2026-02-14 02:01:57 | 0 | |||||||||
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Pediatric Terminology Resource Report Resource Website |
Pediatric Terminology (RRID:SCR_010395) | PEDTERM | data or information resource, ontology, controlled vocabulary | Terms associated with pediatrics, representing information related to child health and development from pre-birth through 21 years of age; contributed by the National Institute of Child Health and Human Development. | owl | is listed by: BioPortal | Aging | nlx_157545 | SCR_010395 | 2026-02-14 02:01:58 | 0 | ||||||||
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Ontology of Experimental Variables and Values Resource Report Resource Website |
Ontology of Experimental Variables and Values (RRID:SCR_010396) | OOEVV | data or information resource, ontology, controlled vocabulary | Ontology that provides a lightweight representation of the variables used to measure experimental properties and the measurement scales that form the complex data types supporting that data. Many different variables measure the same thing, here they use a lightweight representation driven by a small number of classes and a large number of variables to focus only on providing a vocabulary of variables that may be extended for consolidation to standardized variables for specific things and functions to map between values from different measurements scales. They use the base ontology description to provide a very lightweight representation of the basic elements of an experimental design and they use views to instantiate it for specific domains. | owl | is listed by: BioPortal | nlx_157528 | SCR_010396 | 2026-02-14 02:01:58 | 0 |
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