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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Epilepsy Ontology Resource Report Resource Website |
Epilepsy Ontology (RRID:SCR_010317) | EPILONT | data or information resource, ontology, controlled vocabulary | Ontology about the epilepsy domain and epileptic seizures. Based on the diagnosis proposed by the International League Against Epilepsy (ILAE). | owl | is listed by: BioPortal | nlx_157399 | SCR_010317 | 2026-02-14 02:01:56 | 0 | |||||||||
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Loggerhead Nesting Ontology Resource Report Resource Website |
Loggerhead Nesting Ontology (RRID:SCR_010318) | LHN | data or information resource, ontology, controlled vocabulary | An ontology for Loggerhead sea turtle (Caretta caretta) nesting behavior, based on the published ethogram of Hailman and Elowson. A demonstration of ontology construction as a general technique for coding ethograms and other descriptions of behavior into machine understandable forms. | obo | is listed by: BioPortal | nlx_157459 | SCR_010318 | 2026-02-14 02:01:56 | 0 | |||||||||
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Fire Ontology Resource Report Resource Website |
Fire Ontology (RRID:SCR_010320) | FIRE | data or information resource, ontology, controlled vocabulary | Ontology to represent the set of concepts about the fire occurring in natural vegetation, its characteristics, causes and effects, with focus on Cerrado vegetation domain. The fire plays a determinant role on the structure and composition of Cerrado physiognomies. | owl | is listed by: BioPortal | nlx_157404 | SCR_010320 | 2026-02-14 02:01:44 | 0 | |||||||||
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Flora Phenotype Ontology Resource Report Resource Website |
Flora Phenotype Ontology (RRID:SCR_010321) | FLOPO | data or information resource, ontology, controlled vocabulary | Ontology generated from the Flora Malesiana, Flora Gabon, Flora of Central Africa, and a collection of Kew''s African Floras. Every class in the ontology has at least one taxon annotation. This is the pre-classified version of the ontology; the original OWL file is at http://jagannath.pdn.cam.ac.uk/plant/flopo-unclassified.owl | owl | is listed by: BioPortal | nlx_157406 | http://wiki.pro-ibiosphere.eu/wiki/Traits_Task_Group | SCR_010321 | 2026-02-14 02:01:56 | 0 | ||||||||
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BioModels Ontology Resource Report Resource Website |
BioModels Ontology (RRID:SCR_010125) | BIOMODELS | data or information resource, ontology, controlled vocabulary | OWL Representation of the models in the BioModels repository. | owl | is listed by: BioPortal | nlx_157326 | https://code.google.com/p/sbmlharvester/ | SCR_010125 | 2026-02-14 02:01:43 | 0 | ||||||||
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Johns Hopkins University; Maryland; USA Resource Report Resource Website 10+ mentions |
Johns Hopkins University; Maryland; USA (RRID:SCR_010247) | JHU | university | Johns Hopkins University is private research university in Baltimore, Maryland. Founded in 1876, university was named for its first benefactor, American entrepreneur, abolitionist, and philanthropist Johns Hopkins. | private, university, Baltimore, Maryland |
uses: DIRECT2experts is affiliated with: Diabetes Research Centers is related to: Alzheimers Disease Genetics Consortium is related to: International AMD Genetics Consortium is related to: ABX Guide is related to: Clinical and Translational Science Awards Consortium is parent organization of: SynaptomeDB is parent organization of: Johns Hopkins University School of Medicine; Baltimore, Maryland; USA is parent organization of: sim4cc is parent organization of: MRI Studio is parent organization of: CKID A Prospective Cohort Study of Kidney Disease in Children is parent organization of: Nonalcoholic Steatohepatitis Clinical Research Network is parent organization of: ASprofile is parent organization of: GlimmerHMM is parent organization of: Neurogenetics and Behavior Center is parent organization of: Human Proteinpedia is parent organization of: Schramm Lab Spinal Cord Atlases is parent organization of: NetPath is parent organization of: Academic Drug Discovery Consortium is parent organization of: CardioVascular Research Grid (CVRG) is parent organization of: Johns Hopkins University; Undergraduate Neuroscience Program is parent organization of: Bowtie is parent organization of: FLASH is parent organization of: TMAJ is parent organization of: Gastroparesis Clinical Research Consortium is parent organization of: HPRD - Human Protein Reference Database is parent organization of: Atlweb: Alternatives to Animal Testing is parent organization of: Center for Inherited Disease Research is parent organization of: The Protein Coil Library is parent organization of: HIV Guide is parent organization of: Johns Hopkins School of Medicine Department of Molecular and Comparative Pathobiology is parent organization of: Classic Articles in Visual Perception is parent organization of: Experimental Man Blog is parent organization of: MYC Cancer Gene is parent organization of: JIST: Java Image Science Toolkit is parent organization of: DOTS WM tract segmentation is parent organization of: JHU Proj. in Applied Medical Imaging is parent organization of: LDDMM is parent organization of: Johns Hopkins Bloomberg School of Public Health; Maryland; USA is parent organization of: Genetic Resources Core Facility is parent organization of: LS-SNP/PDB is parent organization of: JHU Deep Sequencing and Microarray Core is parent organization of: Glimmer is parent organization of: Johns Hopkins University Labs and Facilities is parent organization of: CRAVAT is parent organization of: John Hopkins University, In-Vivo Cellular Molecular Imaging Center is parent organization of: RosettaDock is parent organization of: CoGAPS is parent organization of: Blox is parent organization of: National Resource for Quantitative Functional MRI is parent organization of: Myrna is parent organization of: CAWorks is parent organization of: Principal Components Analysis of Scalar, Vector, and Mesh Vertex Data is parent organization of: Longitudinal MS Lesion Imaging Archive is parent organization of: Image Synthesis Tools is parent organization of: Atlases of amygdala and hippocampus for pediatric populations is parent organization of: HISAT2 is parent organization of: neurodata is parent organization of: Johns Hopkins University Integrated Imaging Center Core Facility is parent organization of: Center for Computational Biology at JHU is parent organization of: TopHat is parent organization of: PyRosetta is parent organization of: Ecosystem for Multi-modal Brain-behavior Experimentation and Research is parent organization of: Brain Observatory Storage Service and Database (BossDB) is parent organization of: Johns Hopkins University School of Medicine Genetic Resources Core Facility |
nlx_97251, , Wikidata: Q193727, GRID: grid.21107.35, ISNI: 0000 0001 2171 931, Crossref Funder ID: 100007880 | https://ror.org/00za53h95 | SCR_010247 | 2026-02-14 02:01:54 | 12 | ||||||||
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Autism Spectrum Disorder Phenotype Ontology Resource Report Resource Website |
Autism Spectrum Disorder Phenotype Ontology (RRID:SCR_010006) | ASDPTO | data or information resource, ontology, controlled vocabulary | Ontology that encapsulates the Autism Spectrum Disorder behavioral phenotype, informed by the standard ASD assessment instruments and the currently known characteristics of this disorder. | owl, phenotype, behavior | is listed by: BioPortal | Autism Spectrum Disorder | PMID:24163114 | nlx_157322 | http://purl.bioontology.org/ontology/ASDPTO | SCR_010006 | 2026-02-14 02:01:54 | 0 | ||||||
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UCL Bioinformatics Group Resource Report Resource Website 100+ mentions |
UCL Bioinformatics Group (RRID:SCR_010248) | software repository, portal, data or information resource, organization portal, software resource | Group headed by Professor David Jones, and was originally founded as the Joint Research Council funded Bioinformatics Unit within the Department of Computer Science at University College London. Supports the following tools: Protein Structure Prediction Threading (THREADER) Ab initio folding simulations Secondary structure prediction (PSIPRED) Protein disorder prediction (DISOPRED) Protein domain prediction (DomPred) Database of protein disorder (DisoDB) Protein Sequence Analysis Protein function prediction (ffpred) Metsite: Metal binding residue prediction HSPred : Protein-protein interaction characterisation Amino acid substitution matrices Hidden Markov Models (collaboration with N. Goldman, Cambridge, & J. Thorne, NCSU) Genome Analysis Genomic fold recognition (GenTHREADER) Genome annotation using software agents Protein Structure Classification CATH (collaboration with J. Thornton & C. Orengo, UCL Biochemistry) Transmembrane Protein Modelling MEMSAT & MEMSATSVM Folding In Lipid Membranes (FILM) MEMPACK Biological Applications of Data-mining and Machine Learning Techniques Information extraction for biological research (BioRat) Microarray Analysis Data integration for microarray analysis Data visualization Systems Biology Systems biology applied to stem cells Legacy Services (to be retired shortly) Comparison of structure classifications (CATH/SCOP/FSSP) Genomic Threading Database (GTD) | FASEB list | has parent organization: University College London; London; United Kingdom | nlx_156885 | SCR_010248 | 2026-02-14 02:01:55 | 190 | ||||||||||
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University of Texas El Paso Analytical Cytology Core Facility Resource Report Resource Website |
University of Texas El Paso Analytical Cytology Core Facility (RRID:SCR_010137) | UTEP Analytical Cytology, Analytical Cytology, | core facility, this resource is no longer in service, availability annotation standard, data or information resource, service resource, nif annotation standard, narrative resource, access service resource, standard specification | THIS RESOURCE IS NO LONGER IN SERVCE, documented January 23, 2019. Core facility that provides the following services: Zeiss LD-5 Pascal Scanning Confocal Microscope/Assisted access, Zeiss Axioskop Epifluorescence Microscope/Assisted access, Zeiss EM-10 Transmission Electron Microscope/Assisted access, Microscopy sample preparation, Observation and photography service. The Analytical Cytology Core Facility provides assistance in the designing of protocols and the use of sophisticated, well maintained and supervised equipment. Each microscope is equipped with software for image analysis, image processing and printing of digital images. Service contracts are maintained on each of the microscopes. Computers and software are regularly upgraded. Confocal workshops are held regularly to familiarize users with new techniques and new protocols. The specific aims of the Analytical Cytology Core Facility (ACCF) are: 1. to train users in the design of protocols, the fixations, sectioning, cryofixations, immunolocalizations, the use of the Zeiss EM-10, the Zeiss Axioskop epifluorescence microscope and the Zeiss Pascal scanning confocal microscope with image analysis and image processing, 2. to support new faculty in realizing their research objectives that utilize microscopy, 3. to support the productivity of the Infectious Diseases and Immunology unit, the Toxicology unit, the Neuroscience/Metabolic Disorders unit, the Statistical Consulting Laboratory and the Bioinformatics unit by assisting faculty, undergraduate, masters, doctoral and postdoctoral students in advancing biomedical research, 4. to maintain and upgrade equipment and expertise and; 5. to provide core services anticipating self-sustaining maintenance of the core facility. | confocal microscopy, fluorescent microscopy, transmission electron microscopy, labeling, immunohistochemistry assay, photography |
is listed by: Eagle I has parent organization: University of Texas at El Paso |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_156615 | http://science.utep.edu/bbrc/General/analytical-cytology | SCR_010137 | , Cytology, UTEP, Analytical | 2026-02-14 02:01:54 | 0 | ||||||
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International Classification of Primary Care Resource Report Resource Website |
International Classification of Primary Care (RRID:SCR_010262) | ICPC | data or information resource, ontology, controlled vocabulary | Ontology of the international classification of primary care (ICPC). Denmark: World Organisation of Family Doctors, 1993. | umls | is listed by: BioPortal | nlx_157453 | SCR_010262 | 2026-02-14 02:01:55 | 0 | |||||||||
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VassarStats Resource Report Resource Website 500+ mentions |
VassarStats (RRID:SCR_010263) | software resource | Tools for performing statistical computation including: Clinical Research Calculators Probabilities Distributions Frequency Data Proportions Ordinal Data Correlation & Regression t-Tests & Procedures ANOVA ANCOVA | has parent organization: Vassar College; New York; USA | nlx_156916 | SCR_010263 | VassarStats: Website for Statistical Computation | 2026-02-14 02:01:56 | 965 | ||||||||||
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TrueSight Resource Report Resource Website 1+ mentions |
TrueSight (RRID:SCR_009835) | TrueSight | software resource | Self-training Algorithm for Splice Junction Detection using RNA-seq. | is listed by: OMICtools | OMICS_01258 | SCR_009835 | 2026-02-14 02:01:53 | 2 | ||||||||||
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International Classification of Diseases Version 9 - Clinical Modification Resource Report Resource Website |
International Classification of Diseases Version 9 - Clinical Modification (RRID:SCR_010104) | ICD9CM | data or information resource, ontology, controlled vocabulary | Ontology of the international standard diagnostic classification for all general epidemiological, many health management purposes and clinical use. | umls | is listed by: BioPortal | nlx_157451 | SCR_010104 | 2026-02-14 02:01:55 | 0 | |||||||||
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Leaf Senescence Database Resource Report Resource Website 1+ mentions |
Leaf Senescence Database (RRID:SCR_010227) | LSD | data repository, storage service resource, data or information resource, service resource, database | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 26, 2019. Database of leaf senescence to collect SAGs, mutants, phenotypes and literature references. Leaf senescence has been recognized as the last phase of plant development, a highly ordered process regulated by genes called SAGs. By integrating the data from mutant studies and transgenic analysis, they collected many SAGs related to regulation of the leaf senescence in various species. Additionally, they have categorized SAGs according to their functions in regulation of leaf senescence and used standard criteria to describe senescence associated phenotypes for mutants. Users are welcome to submit the new SAGs. | gene, mutant, leaf, phenotype, blast, plant development, sag | has parent organization: Peking University; Beijing; China | Senescence, Aging | Postdoctoral Fellowship at Peking-Tsinghua Center for Life Sciences ; Ministry of Science and Technology of China 2009CB119101; Ministry of Agriculture of China 2010ZX08010-002; Natural Science Foundation of China 31071160; China Postdoctoral Science Foundation 2012M520108; China Postdoctoral Science Foundation 2013T60031 |
PMID:24185698 PMID:21097471 |
THIS RESOURCE IS NO LONGER IN SERVICE. | nlx_156775 | SCR_010227 | 2026-02-14 02:01:54 | 7 | |||||
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BEAST Resource Report Resource Website 5000+ mentions |
BEAST (RRID:SCR_010228) | sequence analysis software, data processing software, software repository, data analysis software, software application, software resource | A cross-platform software program for Bayesian MCMC analysis of molecular sequences. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology. BEAST uses MCMC to average over tree space, so that each tree is weighted proportional to its posterior probability. We include a simple to use user-interface program for setting up standard analyses and a suit of programs for analysing the results. | bio.tools |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: Debian is listed by: bio.tools is listed by: OMICtools is related to: TempEst is related to: BEAST2 is related to: PhyDyn has parent organization: University of Edinburgh; Scotland; United Kingdom |
DOI:10.1186/1471-2148-7-214 | nlx_156859, OMICS_04233, biotools:beast, SCR_015988 | http://www.nitrc.org/projects/beast-library https://bio.tools/beast https://sources.debian.org/src/beast-mcmc/ |
http://beast.bio.ed.ac.uk/Main_Page | SCR_010228 | BEaST Segmentation Library, Beast Software | 2026-02-14 02:01:55 | 6460 | ||||||
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Royal College of Surgeons in Ireland; Dublin; Ireland Resource Report Resource Website |
Royal College of Surgeons in Ireland; Dublin; Ireland (RRID:SCR_009786) | RCSI | university | Private university responsible for the medical speciality of surgery throughout Ireland. |
is related to: Biomedical Diagnostics Institute is parent organization of: Dublin Brain Bank is parent organization of: EPIGEN |
ISNI:0000 0004 0488 7120, grid.4912.e, nlx_143526, Wikidata:Q1124228 | https://ror.org/01hxy9878 | SCR_009786 | Royal College of Surgeons in Ireland | 2026-02-14 02:01:53 | 0 | ||||||||
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Biological Imaging Methods Ontology Resource Report Resource Website 1+ mentions |
Biological Imaging Methods Ontology (RRID:SCR_010235) | FBbi | data or information resource, ontology, controlled vocabulary | A structured controlled vocabulary of sample preparation, visualization and imaging methods used in biomedical research. | obo |
is listed by: BioPortal has parent organization: Cell Image Library (CIL) |
nlx_157334 | SCR_010235 | 2026-02-14 02:01:55 | 1 | |||||||||
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WEBLOGO Resource Report Resource Website 1000+ mentions |
WEBLOGO (RRID:SCR_010236) | data access protocol, software resource, web service, service resource | Web application to generate sequence logos, graphical representations of patterns within multiple sequence alignment. Designed to make generation of sequence logos easy. Sequence logo generator. | Generate sequence logo, pattern graphical representation, multiple sequence alignment, sequence logo generator, amino acid sequence alignment, nucleic acid sequence alignment, sequence alignment representation, bio.tools |
is listed by: Debian is listed by: bio.tools is listed by: SoftCite has parent organization: University of California at Berkeley; Berkeley; USA |
NHGRI K22 HG00056; Searle Scholars program ; NIGMS P50 GM62412 |
PMID:15173120 | Free, Available for download, Freely available | nlx_156853, biotools:weblogo_3 | http://weblogo.threeplusone.com/ https://bio.tools/weblogo_3 |
SCR_010236 | WebLogo Version 2.8.2, WebLogo3, WebLogo | 2026-02-14 02:01:55 | 3653 | |||||
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Purl Resource Report Resource Website 100+ mentions |
Purl (RRID:SCR_010238) | data or information resource, narrative resource, standard specification | Web addresses that act as permanent identifiers in the face of a dynamic and changing Web infrastructure. Instead of resolving directly to Web resources, PURLs provide a level of indirection that allows the underlying Web addresses of resources to change over time without negatively affecting systems that depend on them. This capability provides continuity of references to network resources that may migrate from machine to machine for business, social or technical reasons. | nlx_156858 | SCR_010238 | Persistent Uniform Resource Locators | 2026-02-14 02:01:43 | 208 | |||||||||||
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International Classification of Functioning Disability and Health Resource Report Resource Website |
International Classification of Functioning Disability and Health (RRID:SCR_010239) | ICF | data or information resource, ontology, controlled vocabulary | A classification of health and health-related domains. These domains are classified from body, individual and societal perspectives by means of two lists: a list of body functions and structure, and a list of domains of activity and participation. Since an individual''s functioning and disability occurs in a context, the ICF also includes a list of environmental factors. | owl | is listed by: BioPortal | nlx_157452 | SCR_010239 | 2026-02-14 02:01:54 | 0 |
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