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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
https://github.com/EstebanValverde/Holeboard-for-mice-behavior
Open-source holeboard for studying rodent behavior. Used in neuroscience for assessing exploration, anxiety, and spatial memory in rodents. The project provides a cost-effective solution, offering detailed instructions on sensor integration, circuit assembly, and Arduino programming for conducting experiments. Design files and other details are available on GitHub.
Proper citation: Holeboard (RRID:SCR_025988) Copy
https://github.com/lnccbrown/HSSM
Software Python toolbox for fitting Hierarchical Sequential Sampling Models using Bayesian methods.
Proper citation: HSSM (RRID:SCR_026356) Copy
https://github.com/zero-noise-lab/dream-implant/
Design for chronic electrophysiology implant. Light-weight, can be used in head-fixed or freely moving mice, and is capable of probe recovery for multiple reuses of probes. Includes 3D print designs and step by step instructions for surgery, experimental sessions, and explantation. System includes micro drive, 3D printable Faraday cage, and miniaturized head-fixation system.
Proper citation: DREAM implant (RRID:SCR_026305) Copy
https://github.com/fchampalimaud/optical-lickometer
Low-cost open-source lickometer that combines restricted infrared beam defined by optical fibers, with poke design that allows easy access to the tongue while limiting access of other body parts and external light sources. This device also includes features for detecting nose pokes and presenting visual cues during behavioral tasks. Used to study lick microstructure in combination with other techniques, such as imaging of neural activity, in freely moving mice.
Proper citation: High-Precision Optical Fiber-Based Lickometer (RRID:SCR_026392) Copy
https://github.com/asoronow/belljar/tree/main
Software mouse brain histology tool for neuroscientists. Semiautomated registration and cell counting tool for mouse neurohistology analysis.
Proper citation: Bell Jar (RRID:SCR_026912) Copy
https://www.eneuro.org/content/12/2/ENEURO.0444-24.2025
Low-cost implant for reliable diaphragm EMG recordings in awake, behaving rats.Diaphragm EMG implant.
Proper citation: Implant for Reliable Diaphragm EMG Recordings in Awake, Behaving Rats (RRID:SCR_026968) Copy
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