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https://edspace.american.edu/openbehavior/project/dual-port-lick-detector/

Project related to measuring licking behavior in mice.System includes device used for both real time measurement and manipulation of licking behavior in head fixed mice. System provides distribution package for Dual Port Lick Detector.Package includes files relevant to building lick detector.

Proper citation: Dual port Lick Detector project (RRID:SCR_021454) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/cerebro/

Project related to wireless controlled optogenetic stimulation. Provides system for wireless optogenetic stimulation developed in Karpova Lab with ability to be customized.Features Cerebro,rechargeable, battery powered wireless receiver;head implant containing optical fibers and two independent laser diodes; base station for transmitting radio signals to Cerebro, controlled by Windows computer via USB or by TTL; charging dock; and Xavier, user friendly GUI for sending and logging base station commands.

Proper citation: Cerebro Wireless Optogenetic System project (RRID:SCR_021474) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/4-port-nose-poke/

Portal provides open source nose poke system utilizing Arduino microcontroller, several low cost electronic components, and PVC behavioral arena. System developed by University of Basel scientists for use in behavior experiments.

Proper citation: 4 Port Nose Poke (RRID:SCR_021592) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/open-source-platform-sensory-tasks/

Project related to report animal decision in response to stimulus.Includes software tool as Arduino and Python based platform for Go or No Go sensory task to report animal decision in response to stimulus provided by University of Melbourne, Melbourne, VIC, Australia scientists.

Proper citation: Open Source platform for Sensory Tasks project (RRID:SCR_021468) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/deepethogram/

Software tool to extract relevant features from images and use time series of these features to classify whether given behavior is present in each frame of video recording.machine learning pipeline for supervised behavior classification from raw pixels. Performs action recognition ,automated behavior classification, over frames. Used for automated behavior classification to detect and track behavior over time.

Proper citation: DeepEthogram (RRID:SCR_022355) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/mri-compatible-microdrive/

MRI compatible microdrive that can precisely position electrodes without causing significant imaging artifacts.

Proper citation: MRI Compatible Microdrive (RRID:SCR_022352) Copy   

•   Source: SciCrunch Registry

https://github.com/SunGL001/DeepBhvTracking

Software tool as novel tracking algorithm that combines deep learning and background subtraction.

Proper citation: DeepBhvTracking (RRID:SCR_022351) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/neonatal-stereotax/

3D printed device for stereotaxic viral delivery into brains of neonatal mice.Used for stable and precise stereotaxic surgery in neonatal mice.

Proper citation: Neonatal Stereotaxic Mouse Adaptor (RRID:SCR_022349) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/neuroethology-tools/

Software Matlab based tool to visualize and analyze multimodal datasets.

Proper citation: Behavior Ensemble and Neural Trajectory Observatory (RRID:SCR_022348) Copy   

•   Source: SciCrunch Registry

https://github.com/neuroethology/MARS_Developer

Software MARS based Python pipeline used for detection, pose estimation and behavior classification in experiments of any format. Repository contains all the code you'll need to train your own version of MARS.

Proper citation: MARS Developer (RRID:SCR_022346) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/led-matrix-stimuli/

Open source device consists of three LED matrices that can be independently controlled via open source Arduino Uno microcontroller. Matrices of LEDs are mounted above nose pokes to examine perceptual decision making in rats. Highly modifiable LED matrices for visual stimulus presentation in behavioral studies.Designs for printing these accessory devices are available in GitHub account for the project.

Proper citation: LED Matrix Stimuli (RRID:SCR_022345) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/clara/

Closed loop automated reaching apparatus for interrogating complex motor behaviors.Mechanical components include behavior box, series of cameras, and food pellet dispenser. Single workstation computer manages cameras, communicates with microcontroller, and analyzes mouse behavior in real time using modules extracted from DeepLabCut. Integrates fully automated, markerless kinematic tracking of multiple features to classify animal behavior and delivers neural stimulation based on behavioral outcomes. CLARA is compatible with advanced neurophysiological tools, enabling testing of neurostimulation devices and identification of novel neurological biomarkers.System fully automates trial initiation and pellet delivery and is capable of accurately delivering stimulation in response to trial outcome with short latency.

Proper citation: Closed Loop Automated Reaching Apparatus (RRID:SCR_022365) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/tweetynet/

Software tool as single neural network model that learns how to segment spectrograms of birdsong into annotated syllables.

Proper citation: TweetyNet (RRID:SCR_022360) Copy   

•   Source: SciCrunch Registry

https://cellexplorer.org/

Open source framework for single cell characterization and visualization.Graphical user interface, standardized processing module and data structure for exploring and classifying single cells acquired using extracellular electrodes.

Proper citation: CellExplorer (RRID:SCR_022358) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/pycro-manager/

Open source software for customized and reproducible microscope control. Software Python package that enables control of micro-manager as well as development of customized experiments integrated with real-time image processing.

Proper citation: Pycro Manager (RRID:SCR_022356) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/cellpose/

Software tool as generalist algorithm for cell and nucleus segmentation.

Proper citation: Cellpose (RRID:SCR_022332) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/compass/

Non invasive, infrared activity and sleep measurement system that uses passive infrared sensors and Arduino microprocessor. Publication provides protocol for assembling COMPASS as well as provides support protocols and python scripts for data analysis, best practices for optimum results, troubleshooting, and alternative protocols for different use scenarios.

Proper citation: COMPASS (RRID:SCR_022329) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/brainrender/

Software Python package for visualizing and interacting with datasets registered to brain atlases. Used for visualization of neuroanatomical and morphological data.

Proper citation: Brainrender (RRID:SCR_022328) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/tetrodrive/

3D printed microdrive for electrophysiology and optophysiology. Consists of main body and head. Used for in vivo tetrode recording, optical imaging, and optogenetic manipulation in freely moving mice.Design files and build instructions for this device can be found on TetrODrive GitHub.Microdrive can be assembled in 15 min and price for all materials, including 3D printer, is lower than single commercial microdrive.

Proper citation: TetrODrive (RRID:SCR_022326) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/frost/

Open source system built around Arduino based microcontroller for analog and digital input and synchronization combined with custom printed circuit board. Hardware and Arduino-based firmware used to synchronize experimental and electrophysiological data.

Proper citation: Florida research open source synchronization tool (RRID:SCR_022344) Copy   

•   Source: SciCrunch Registry