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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Biomedical Simulations Resource Resource Report Resource Website 1+ mentions |
Biomedical Simulations Resource (RRID:SCR_001952) | BMSR | biomedical technology resource center, training resource | Biomedical technology resource center dedicated to the advancement of the state-of-the-art in biomedical modeling and simulation through Core and Collaborative Research projects, as well as the dissemination of this knowledge and related software through Service, Training and Dissemination activities aimed at the biomedical community at large. The BMSR includes four core research projects: * Pharmacokinetic/Pharmacodynamic Systems Analysis * Nonlinear Modeling of Complex Biomedical Systems * Modeling of Autonomic, Metabolic and Vascular Control Interactions * Nonlinear Modeling of the Hippocampus Fifteen Collaborative Research Projects serve as challenging test grounds for the Resource's methodologies and expertise. | hippocampus, modeling, simulation, model, pharmacokinetic, pharmacodynamic, systems analysis, nonlinear modeling, complex biomedical system, autonomic, metabolic, vascular control, interaction, intracellular signalling, biomarker |
has parent organization: University of Southern California; Los Angeles; USA is parent organization of: BMSR Workshops is parent organization of: BMSR Short Courses is parent organization of: LYSIS is parent organization of: PNEUMA is parent organization of: TARGETgene is parent organization of: EONS is parent organization of: ADAPT |
Cancer, Alzheimer's disease, Metabolic syndrome | NIBIB P41-EB001978 | nif-0000-10530 | http://bmsr.usc.edu/index.html | SCR_001952 | Biomedical Simulations Resource (BMSR) | 2026-02-16 09:45:37 | 8 | |||||
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GSE27831 Resource Report Resource Website 10+ mentions |
GSE27831 (RRID:SCR_003646) | data set, data or information resource | Curated data set from gene expression profiles of 29 unique samples from uveal melanoma patients that were measured on Affymetrix microarray. In addition, expression of syntenin-1 was measured by RT-PCR and this data is also available in the study. | syntenin-1, gene expression profile, gene expression, eye, adult human |
is related to: Gene Expression Omnibus has parent organization: RanchoBiosciences |
Cancer, Uveal melanoma | Free, Public | nlx_157798 | SCR_003646 | 2026-02-16 09:46:05 | 12 | ||||||||
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GSE20194 Resource Report Resource Website 50+ mentions |
GSE20194 (RRID:SCR_003645) | GSE20194 | data set, data or information resource | Curated data set of gene expression data from 230 stage I-III breast cancers that were generated from fine needle aspiration specimens of newly diagnosed breast cancers before any therapy. The biopsy specimens were collected sequentially during a prospective pharmacogenomic marker discovery study between 2000 and 2008. These specimens represent 70-90% pure neoplastic cells with minimal stromal contamination. In the study, patients received 6 months of preoperative (neoadjuvant) chemotherapy including paclitaxel, 5-fluorouracil, cyclophosphamide and doxorubicin followed by surgical resection of the cancer. | gene expression, chemotherapy, paclitaxel, 5-fluorouracil, cyclophosphamide, doxorubicin, adult human |
is related to: Gene Expression Omnibus has parent organization: RanchoBiosciences |
Cancer, Breast cancer | Free, Public | nlx_157797 | SCR_003645 | 2026-02-16 09:46:14 | 66 | |||||||
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GSE4698 Resource Report Resource Website 1+ mentions |
GSE4698 (RRID:SCR_003644) | GSE4698 | data set, data or information resource | Curated data set where gene expression profiling was performed on 60 prospectively collected samples of children with first relapse of acute lymphoblastic leukemia enrolled on the relapse trial ALL-REZ BFM 2002 of the Berlin-Frankfurt-Muenster study group. | young human, gene expression, relapse, male, female, gene expression profile, child |
is related to: Gene Expression Omnibus has parent organization: RanchoBiosciences |
Cancer, Acute lymphoblastic leukemia | Free, Public | nlx_157795 | SCR_003644 | 2026-02-16 09:46:12 | 4 | |||||||
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GSE4271 Resource Report Resource Website 50+ mentions |
GSE4271 (RRID:SCR_003643) | GSE4271 | data set, data or information resource | Curated data set from a study that investigated 77 primary high-grade astrocytomas and 23 matched recurrences so that changes in gene expression related to both survival and disease progression can be identified. Samples in the study include WHO grade III and IV astrocytomas with a wide range of survival times. | adult human, brain, gene expression |
is related to: Gene Expression Omnibus has parent organization: RanchoBiosciences |
Cancer, Astrocytoma | Free, Public | nlx_157794 | SCR_003643 | 2026-02-16 09:46:09 | 60 | |||||||
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Target genes of Wnt/beta-catenin signaling Resource Report Resource Website 10+ mentions |
Target genes of Wnt/beta-catenin signaling (RRID:SCR_007022) | Target genes of Wnt/beta-catenin signaling | data set, data or information resource | A list of target genes of Wnt/beta-catenin signaling. Suggestions for additions are welcome. Direct targets are defined as those with Tcf binding sites and demonstrating that these sites are important. | target gene, wnt/beta-catenin signaling, wnt, beta-catenin, signaling, gene | has parent organization: Stanford University; Stanford; California | Colon cancer, Tumor, Adenocarcinoma, Melanoma, Cancer | The community can contribute to this resource | nlx_156867 | SCR_007022 | 2026-02-16 09:46:52 | 24 | |||||||
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UMAS University Hospital - Biobanks of the Department of Clinical Pathology and Cytology Resource Report Resource Website |
UMAS University Hospital - Biobanks of the Department of Clinical Pathology and Cytology (RRID:SCR_005957) | Biobanks of the Department of Clinical Pathology and Cytology | instrument supplier, material resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 6th, 2022. The biobank comprises paraffin blocks of surgical and autopsy tissue samples and corresponding histological slides as well as cytological material consisting of slides of vaginal smears, fine needle aspiration biopsies and exfoliative cytological material. The tissue samples date back until 1944 and most of the cytological samples until 1970. A subunit of the bank constitutes the National Tissue Microarray Centre. This center is supported by SWEGENE with the purpose to organize and construct tissue microarrays (TMA:s) for high throughput molecular pathology research on various kinds of tumors and other diseases. By linking the TMA.s to long-term and complete clinical follow-up data, prognostic and predictive studies will be facilitated. Biobank content: * Approximately 2,4 million paraffin blocks of surgical tissue specimens, * 1,1 million paraffin blocks of tissue samples from autopsies, * 3,8 million histological slides and * 1,6 million cytology slides. At present, the Tissue Microarray Centre includes: * A consecutive series of all invasive breast cancers (n=600) diagnosed in Malmo between 1988 and 1992. * All incident breast cancers within the Malmo Diet and Cancer cohort (n=400). * A subgroup of 600 pre-menopausal primary breast cancers within the nationwide, population-based randomized tamoxifen trial SBII:2. * 180 primary breast cancers from post-menopausal women included in a similar study. * A set of 120 extremely well characterized primary breast cancer samples with a clinical follow-up of 10 years. More than 40 relevant tumor biological parameters have been recorded in this material and it is therefore useful for a first screening of a marker in order to identify associations to other gene products. * 350 renal cell carcinomas (In collaboration with NUS). We provide researchers with state-of-the-art population based tissue microarrays with long-term and complete follow-up data on survival and treatment. With the TMA-technology, valuable biobank material will be preserved, allowing high throughput in-situ analyses of various tumors and other diseases with a minimal waste of tissue. | surgery, autopsy, histology slide, vaginal smear, fine needle aspiration, biopsy, tissue microarray, tumor, disease, cancer, diet, renal cell, kidney |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Swedish National Biobank Program |
Breast cancer, Cancer, Tumor, Carcinoma | SWEGENE | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_151315 | SCR_005957 | UMAS University Hospital - Biobanks of the Department of Clinical Pathology Cytology | 2026-02-16 09:46:35 | 0 | |||||
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DFCI Center for Cancer Computational Biology Resource Report Resource Website |
DFCI Center for Cancer Computational Biology (RRID:SCR_012688) | DFCI CCCB | service resource, core facility, access service resource | Core facility that provides the following services: Microarray and other genomic data analysis, MiSeq. The Center provides broad-based support for the generation, analysis, and interpretation of genomic and other large-scale data in the context of basic, clinical and translational research. The CCCB has three primary elements. * The CCCB sequencing facility offers a wide range of services to assist in the design and execution of next-generation sequencing projects. Utilizing the Illumina (Solexa) sequencing technology, they currently support a number of applications inlcuding ChIP-Seq, RNA-Seq, whole genome, whole exome, and targeted re-sequencing. * The analytical services and support platform aims to provide state-of-the-art assistance in the collection, management, analysis, and interpretation of large-scale data with a focus on data generated using ''''omic technologies. In addition, they offer software, services, and training designed to assist investigators in advancing their research. * The CCCB research program is focused on development of new methods for improving analysis and interpretation of genomic data through integration of diverse data types with the goal of creating open-source software tools to be made freely-available to the research community. | nucleic acid microarray assay, next generation sequencing, genome, genomic, microarray |
is listed by: ScienceExchange is listed by: Eagle I is related to: Dana-Farber Cancer Institute Labs and Facilities has parent organization: Dana-Farber Cancer Institute |
Cancer | SciEx_8878 | http://harvard.eagle-i.net/i/0000012e-59a5-5f86-55da-381e80000000 http://www.scienceexchange.com/facilities/center-for-cancer-computational-biology-cccb-harvard |
SCR_012688 | Dana-Farber Cancer Institute Center for Cancer Computational Biology, DFCI Center for Cancer Computational Biology (CCCB) | 2026-02-16 09:48:27 | 0 | ||||||
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UK Biobank Resource Report Resource Website 1000+ mentions |
UK Biobank (RRID:SCR_012815) | service resource, biobank, storage service resource, material storage repository | Biobank provides data collected at Assessment Center and via online questionnaires on participants aged 40-69 years recruited throughout United Kingdom and provides summary information to improve prevention, diagnosis and treatment of serious and life threatening illnesses. | Data, collected, United Kingdom, prevention, diagnosis, treatment, illness, questionnaire, blood, urine, saliva, cognitive function, psychological status, hearing test, interview, operation, medication, blood pressure, body measurementdie |
is listed by: One Mind Biospecimen Bank Listing is related to: AstraZeneca PheWAS Portal |
cancer, heart diseases, stroke, diabetes, arthritis, osteoporosis, eye disorders, depression, dementia. | UK Department of Health ; MRC ; Scottish Government ; Welsh Assembly Government ; Wellcome Trust |
grid.421945.f, nlx_95741, ISNI: 0000 0004 0396 0496, Wikidata: Q7864819 | https://ror.org/02frzq211 | SCR_012815 | 2026-02-16 09:48:18 | 2914 | |||||||
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Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Antibody Technology Resource Report Resource Website |
Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Antibody Technology (RRID:SCR_015322) | service resource, core facility, access service resource, resource | THIS RESOURCE IS NO LONGER IN SERVICE.Documented on July 27,2022. Core facility that provides custom designed monoclonal antibodies made in mice, rats and rabbits. Services include design of antigens, immunization and screening strategies; hybridoma cell line production and optimization; and custom designed antibodies for biomarker discovery. | custom antibodies, antigen design, biomarker discovery |
is listed by: NIDDK Information Network (dkNET) has parent organization: Fred Hutchinson Cancer Center is organization facet of: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology |
cancer | NIDDK P30DK056465 | THIS RESOURCE IS NO LONGER IN SERVICE. | SCR_015322 | 2026-02-16 09:48:46 | 0 | ||||||||
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Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Experimental Histopathology Shared Resource Resource Report Resource Website |
Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Experimental Histopathology Shared Resource (RRID:SCR_015329) | service resource, core facility, access service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 27,2022. Core facility which provides various histology, histochemistry, immunochemistry, and pathology services. They also provide technical training for histopathological methods and tools. | experimental histopathology, histology, immunochemistry, human tissue |
is listed by: NIDDK Information Network (dkNET) has parent organization: Fred Hutchinson Cancer Center is organization facet of: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology |
cancer | NIDDK P30DK056465 | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_015329 | 2026-02-16 09:48:46 | 0 | ||||||||
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Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Arnold Library Resource Report Resource Website |
Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Arnold Library (RRID:SCR_015328) | service resource, core facility, access service resource, resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 27, 2022. Library that provides physical and digital research resources for Fred Hutchinson's Center in Cancer Research. Physical resources include a library with high-speed internet and computer lab resources as well as access to digital research journals, databases and web services. | research resource, library, digital database access, computer lab resources |
is listed by: NIDDK Information Network (dkNET) has parent organization: Fred Hutchinson Cancer Center is organization facet of: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology |
cancer | NIDDK P30DK056465 | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_015328 | 2026-02-16 09:48:54 | 0 | ||||||||
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Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Specimen Processing/Research Cell Bank Resource Report Resource Website |
Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Specimen Processing/Research Cell Bank (RRID:SCR_015332) | service resource, core facility, access service resource | THIS RESOURCE IS NO LONGER IN SERVICE.Documented on July 27,2022. A specimen processing/research cell bank that provides a broad range of services including processing of blood, urine, buccal, peripheral blood mononuclear cells (PBMC); DNA extractions; mycoplasma testing; and DNA fingerprinting for cell line verification. The facility also offers specimen storage options and tissue culture of B cells. | specimen processing, research cell bank, dna extractions, dna fingerprinting |
is listed by: NIDDK Information Network (dkNET) has parent organization: Fred Hutchinson Cancer Center is organization facet of: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology |
cancer | NIDDK P30DK056465 | THIS RESOURCE IS NO LONGER IN SERVICE. | SCR_015332 | 2026-02-16 09:48:54 | 0 | ||||||||
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Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Flow Cytometry Resource Report Resource Website |
Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Flow Cytometry (RRID:SCR_015333) | service resource, core facility, access service resource | THIS RESOURCE IS NO LONGER IN SERVICE.Documented on July 27,2022. Core facility which offers various options for instrumentation, from single-laser benchtop analyzers to complex multi-laser cell sorts for cell analysis and sorting. Technical assistance is available for the evaluation and interpretation of data as well as assistance in experimental design. | flow cytometry, cell analysis, technical assistance, experimental design |
is listed by: NIDDK Information Network (dkNET) has parent organization: Fred Hutchinson Cancer Center is organization facet of: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology |
cancer | NIDDK P30DK056465 | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_015333 | 2026-02-16 09:48:46 | 0 | ||||||||
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Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Electron Microscopy Resource Report Resource Website 1+ mentions |
Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Electron Microscopy (RRID:SCR_015330) | service resource, core facility, access service resource, resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 27,2022. Core facility that provides transmission electron microscopy and scanning electron microscopy for Fred Hutch, Cancer Consortium and Seattle area researchers. Services include immunogold labeling, negative staining, and a variety of sample preparations including cryo techniques, high pressure freezing (HPF) and automatic freeze substitution (AFS). | electron microscopy, cancer research, immungold labeling, negative staining, cryo techniques |
is listed by: NIDDK Information Network (dkNET) has parent organization: Fred Hutchinson Cancer Center is organization facet of: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology |
cancer | NIDDK P30DK056465 | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_015330 | 2026-02-16 09:48:46 | 1 | ||||||||
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Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Glassware Services Resource Report Resource Website |
Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Glassware Services (RRID:SCR_015331) | service resource, core facility, access service resource, resource | THIS RESOURCE IS NO LONGER IN SERVICE.Documented on July 27,2022. Core facility that provides cleaning and sterilization of reusable laboratory glassware. Services include washing, drying and sterilization of glassware, pipette plugging and autoclaving of laboratory liquids. The core also provides support for operation of media services and biohazardous waste processing. | glassware services, laboratory glassware, sterilization, autoclaving, biohazardous waste processing |
is listed by: NIDDK Information Network (dkNET) has parent organization: Fred Hutchinson Cancer Center is organization facet of: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology |
cancer | NIDDK P30DK056465 | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_015331 | 2026-02-16 09:48:46 | 0 | ||||||||
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Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Research Freezers and Sample Storage Resource Resource Report Resource Website |
Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Research Freezers and Sample Storage Resource (RRID:SCR_015334) | service resource, core facility, access service resource, resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 27,2022. Core facility that provides space for freezers used to store research samples, offers assistance with evaluating the space and power needs for new freezers, provides information on best practices, and provides access and allocates space in the shared freezer facility. | freezer space, research storage |
is listed by: NIDDK Information Network (dkNET) has parent organization: Fred Hutchinson Cancer Center is organization facet of: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology |
cancer | NIDDK P30DK056465 | THIS RESOURCE IS NO LONGER IN SERVICE. | SCR_015334 | 2026-02-16 09:48:46 | 0 | ||||||||
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Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Proteomics Resource Resource Report Resource Website |
Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Proteomics Resource (RRID:SCR_015335) | service resource, core facility, access service resource, resource | THIS RESOURCE IS NO LONGER IN SERVICE.Documented on July 27,2022. Core facility that provides support for characterizing proteins and peptides by mass spectrometry and high-performance liquid chromatography. | proteomics, protein characterization, mass spectrometry, high performance liquid chromatography |
is listed by: NIDDK Information Network (dkNET) has parent organization: Fred Hutchinson Cancer Center is organization facet of: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology |
cancer | NIDDK P30DK056465 | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_015335 | 2026-02-16 09:48:46 | 0 | ||||||||
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American College of Surgeons National Cancer Database Resource Report Resource Website 10+ mentions |
American College of Surgeons National Cancer Database (RRID:SCR_025488) | NCDB | database, data or information resource | Clinical oncology database sourced from hospital registry data collected in Commission on Cancer-accredited facilities. These data are used to analyze and track patients with malignant neoplastic diseases, their treatments, and outcomes. | Commission on Cancer-accredited facilities, hospital registry data, malignant neoplastic diseases, | cancer, malignant neoplastic, | Free, Freely available, | SCR_025488 | 2026-02-16 09:51:05 | 12 |
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