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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Reference Sequence Annotation Resource Report Resource Website 1+ mentions |
Reference Sequence Annotation (RRID:SCR_006095) | RSA | data or information resource, ontology, controlled vocabulary | An ontology for sequence annotations and how to preserve them with reference sequences. | owl | is listed by: BioPortal | nlx_157571 | SCR_006095 | 2026-02-17 10:01:00 | 2 | |||||||||
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Vaccine Ontology Resource Report Resource Website 1+ mentions |
Vaccine Ontology (RRID:SCR_006271) | VO | data or information resource, ontology, controlled vocabulary | A biomedical ontology in the vaccine domain | owl |
is used by: Ontology of Vaccine Adverse Events is listed by: BioPortal |
PMID:21871085 | nlx_157621 | SCR_006271 | 2026-02-17 10:01:02 | 1 | ||||||||
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Biochemical Substructure Ontology Resource Report Resource Website |
Biochemical Substructure Ontology (RRID:SCR_010185) | BICSO | data or information resource, ontology, controlled vocabulary | Biochemical Substructure Ontology | protege | is listed by: BioPortal | nlx_157330 | SCR_010185 | 2026-02-17 10:01:39 | 0 | |||||||||
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Bilingual Ontology of Alzheimer Resource Report Resource Website |
Bilingual Ontology of Alzheimer (RRID:SCR_010149) | ONTOAD | data or information resource, ontology, controlled vocabulary | A bilingual (English-French) domain ontology for modeling knowledge about Alzheimer's Disease and Related Syndromes. | owl, alzheimer, ontology, bilingual | is listed by: BioPortal | Alzheimer's disease, Alzheimer's Related Syndrome | nlx_157325 | SCR_010149 | 2026-02-17 10:01:41 | 0 | ||||||||
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BRENDA Tissue and Enzyme Source Ontology Resource Report Resource Website 1+ mentions |
BRENDA Tissue and Enzyme Source Ontology (RRID:SCR_010031) | BTO | data or information resource, ontology, controlled vocabulary | A structured controlled vocabulary for the source of an enzyme. It comprises terms for tissues, cell lines, cell types and cell cultures from uni- and multicellular organisms. | obo |
is used by: TISSUES is listed by: BioPortal has parent organization: BRENDA |
nlx_157323 | SCR_010031 | 2026-02-17 10:01:39 | 1 | |||||||||
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Alzheimer's disease ontology Resource Report Resource Website 1+ mentions |
Alzheimer's disease ontology (RRID:SCR_010289) | ADO | data or information resource, ontology, controlled vocabulary | An open, public ontology representing relevant knowledge on Alzheimer's disease. | owl, ontology, alzheimer | is listed by: BioPortal | Alzheimer's disease | Public, Open unspecified license | nlx_157314 | SCR_010289 | Alzheimers disease ontology | 2026-02-17 10:01:48 | 1 | ||||||
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Fungal Gross Anatomy Ontology Resource Report Resource Website |
Fungal Gross Anatomy Ontology (RRID:SCR_010322) | FAO | data or information resource, ontology, controlled vocabulary | A structured controlled vocabulary for the anatomy of fungi. | obo | is listed by: BioPortal | nlx_157409 | http://www.yeastgenome.org/fungi/fungal_anatomy_ontology/ | SCR_010322 | 2026-02-17 10:01:49 | 0 | ||||||||
|
Human Developmental Anatomy Ontology abstract version 1 Resource Report Resource Website |
Human Developmental Anatomy Ontology abstract version 1 (RRID:SCR_010323) | EHDAA | data or information resource, ontology, controlled vocabulary | A structured controlled vocabulary of stage-specific anatomical structures of the human. It has been designed to mesh with the mouse anatomy and incorporates each Carnegie stage of development (CS1-20). The abstract version of the human developmental anatomy ontology compresses all the tissues present over Carnegie stages 1-20 into a single hierarchy. The heart, for example, is present from Carnegie Stage 9 onwards and is thus represented by 12 EHDA IDs (one for each stage). In the abstract mouse, it has a single ID so that the abstract term given as just ''heart'' really means ''heart (CS 9-20)''. Timing details will be added to the abstract version of the ontology in a future release. | obo | is listed by: BioPortal | nlx_157429 | SCR_010323 | 2026-02-17 10:01:27 | 0 | |||||||||
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G Protein-Coupled Receptor BioAssays Ontology Resource Report Resource Website 1+ mentions |
G Protein-Coupled Receptor BioAssays Ontology (RRID:SCR_010324) | BAO-GPCR | data or information resource, ontology, controlled vocabulary | Ontology (http://www.bioassayontology.org/bao_gpcr) that describes pharmacology, biochemistry and physiology of these important and therapeutically promising class of academic and pharmaceutical research targets. Incorporation and comparison of various small molecule screening data sets, such as those deposited in PubChem, ChEMBL, KEGG, PDSP, and/or IUPHAR databases, requires a formalized electronic organization system. In order to bridge the gap between the overflow of HTS data and the bottleneck of integrated analysis tools, herein, we provide the first comprehensive GPCR ontology. The development and utility of GPCR ontology was based on previously developed BioAssay Ontology (BAO). The GPCR ontology contains information about biochemical, pharmacological, and functional properties of individual GPCRs as well as GPCR-selective ligands inclusive of their HTS screening results and other records. This provides the first all-inclusive GPCR ontology with all available data to model the relationship between the GPCR binding sites and their physiologic and pharmacologic role in physiology via small molecule chemical structures. We developed this system using emerging semantic technologies, by leveraging existing and descriptive domain level ontologies. | owl |
is listed by: BioPortal has parent organization: Bioassay Ontology |
nlx_157410 | SCR_010324 | 2026-02-17 10:01:45 | 5 | |||||||||
|
Galen Ontology Resource Report Resource Website |
Galen Ontology (RRID:SCR_010325) | GALEN | data or information resource, ontology, controlled vocabulary | A translation of the full Galen ontology (from the OpenGALEN project) into the OWL description logic. | owl | is listed by: BioPortal | nlx_157411 | SCR_010325 | 2026-02-17 10:01:42 | 0 | |||||||||
|
Gene Ontology Extension Resource Report Resource Website |
Gene Ontology Extension (RRID:SCR_010327) | GO-EXT | data or information resource, ontology, controlled vocabulary | An extension of the Gene Ontology. | obo |
is listed by: BioPortal has parent organization: Gene Ontology |
nlx_157414 | SCR_010327 | 2026-02-17 10:01:27 | 0 | |||||||||
|
Genomic Clinical Decision Support Ontology Resource Report Resource Website |
Genomic Clinical Decision Support Ontology (RRID:SCR_010331) | GENE-CDS | data or information resource, ontology, controlled vocabulary | Ontology to unify several functionalities in a single resource, being: * A knowledge base for clinical pharmacogenomics/pharmacogenetics that can be used for question-answering (e.g., which SNPs are associated with this drug?) * A rule base for clinical decision support (e.g., inferring that a patient with a specific set of SNPs requires a lowered dose of warfarin and generating a CDS message that can be viewed by clinicians) * A tool for checking data consistency (e.g., highlighting which allele definitions in PharmGKB are overlapping, or which clinical decision support rules are matching the same group of patients) | owl | is listed by: BioPortal | nlx_157419 | SCR_010331 | Genomic CDS ontology | 2026-02-17 10:01:27 | 0 | ||||||||
|
Crop Ontology Resource Report Resource Website 1+ mentions |
Crop Ontology (RRID:SCR_010299) | CO | data or information resource, ontology, controlled vocabulary | Ontology that includes crop-specific trait ontologies for several economically important plants like rice, wheat, maize, potato, musa, chickpea and sorghum along with other important domains for crop research such as germplasm, passport, trait measurement scales, experimental design factors etc. | obo | is listed by: BioPortal | nlx_157378 | http://cropontology.org/ | SCR_010299 | 2026-02-17 10:01:26 | 8 | ||||||||
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GeoSpecies Ontology Resource Report Resource Website |
GeoSpecies Ontology (RRID:SCR_010332) | GEOSPECIES | data or information resource, ontology, controlled vocabulary | Ontology to help integrate species concepts with species occurrences, gene sequences, images, references and geographical information. See also Taxonconcept.org | owl | is listed by: BioPortal | nlx_157420 | SCR_010332 | 2026-02-17 10:01:45 | 0 | |||||||||
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Amino Acid Ontology Resource Report Resource Website |
Amino Acid Ontology (RRID:SCR_010290) | AMINO-ACID | data or information resource, ontology, controlled vocabulary | An ontology of amino acids and their properties. Inferred version. | owl | is listed by: BioPortal | nlx_157315 | SCR_010290 | 2026-02-17 10:01:26 | 0 | |||||||||
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Health Indicator Ontology Resource Report Resource Website |
Health Indicator Ontology (RRID:SCR_010335) | HLTHINDCTRS | data or information resource, ontology, controlled vocabulary | Ontology for standardized health outcome and health determinant indicators as maintained by the CDC National Center for Health Statistics. | owl | is listed by: BioPortal | nlx_157424 | SCR_010335 | 2026-02-17 10:01:27 | 0 | |||||||||
|
Health Level Seven Reference Implementation Model Version 3 Resource Report Resource Website |
Health Level Seven Reference Implementation Model Version 3 (RRID:SCR_010336) | HL7 | data or information resource, ontology, controlled vocabulary | Ontology for the data types used in the creation of HL7 (Health Level Seven International) V3 specifications. This version is the first update to Normative RIM, Release 3. It is based on changes approved in Harmonization in November 2010. This release of the RIM is bound to HL7 Abstract Data Types Release 2. https://www.hl7.org/implement/standards/product_brief.cfm?product_id=264 | owl |
is listed by: BioPortal has parent organization: Health Level Seven International |
nlx_157425 | SCR_010336 | 2026-02-17 10:01:45 | 0 | |||||||||
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Human Interaction Network Ontology Resource Report Resource Website |
Human Interaction Network Ontology (RRID:SCR_010339) | HINO | data or information resource, ontology, controlled vocabulary | An Interaction Network Ontology (INO) extension for the domain of human interaction networks. It has currently incoporated Reactome reactions and pathways. Like INO, HINO aligns with BFO. HINO is developed by following the OBO Foundry principles. | owl | is listed by: BioPortal | nlx_157433 | SCR_010339 | 2026-02-17 10:01:27 | 0 | |||||||||
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IMGT-ONTOLOGY Resource Report Resource Website |
IMGT-ONTOLOGY (RRID:SCR_010342) | IMGT-ONTOLOGY | data or information resource, ontology, controlled vocabulary | Ontology for immunogenetics and immunoinformatics. Provides semantic specification of terms to be used in immunogenetics and immunoinformatics and manages related knowledge, thus allowing standardization for immunogenetics data from genome, proteome, genetics, two-dimensional (2D) and three-dimensional (3D) structures. Manages the knowledge through diverse facets relying on seven axioms, IDENTIFICATION, CLASSIFICATION, DESCRIPTION, NUMEROTATION, LOCALIZATION, ORIENTATION and OBTENTION. These axioms postulate that any object, any process and any relation can be identified, classified, described, numbered, localized and orientated, and the way it is obtained can be characterized. The axioms constitute the Formal IMGT-ONTOLOGY, also designated as IMGT-Kaleidoscope. As the same axioms can be used to generate concepts for multi-scale level approaches, the Formal IMGT-ONTOLOGY represents a paradigm for system biology ontologies, which need to identify, to classify, to describe, to number, to localize and to orientate objects, processes and relations at the molecule, cell, tissue, organ, organism or population levels. IMGT, the international ImMunoGeneTics information system, has been built on IMGT-ONTOLOGY. The version 1.0.2 of IMGT-ONTOLOGY includes the concepts of IDENTIFICATION and the concepts of CLASSIFICATION. | owl, ontology, immunogenetics, immunoinformatics, terms semantic specification, bio.tools |
is listed by: BioPortal is listed by: Debian is listed by: bio.tools has parent organization: IMGT - the international ImMunoGeneTics information system |
Free, Freely available | nlx_157436, biotools:IMGt-ONtOLOGY | http://www.imgt.org/IMGTindex/ontology.php https://bio.tools/IMGT-ONTOLOGY |
SCR_010342 | 2026-02-17 10:01:49 | 0 | |||||||
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Image and Data Quality Assessment Ontology Resource Report Resource Website 1+ mentions |
Image and Data Quality Assessment Ontology (RRID:SCR_010343) | IDQA | data or information resource, ontology, controlled vocabulary | Ontology for Image and Data Quality Assessment for scientific data management. | obo | is listed by: BioPortal | nlx_157437 | SCR_010343 | 2026-02-17 10:01:27 | 4 |
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