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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Website Status Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
Catalepsy Bar project
 
Resource Report
Resource Website
Catalepsy Bar project (RRID:SCR_021439) data or information resource, instrument resource, portal, project portal Project related to measuring of muscular rigidity that can result from several factors including Parkinsons disease, or pharmacological exposure to antipsychotics or cannabis. Provides automated apparatus for measuring catalepsy that increases measurement accuracy and reduces observer bias.Catalepsy bar test automatically measures and records time it takes for rat to remove its forelimbs from bar. 3D printed test apparatus used to make catalepsy measurements in rats more standardized and accurate. Automated apparatus, measuring catalepsy, measurement accuracy, observer bias reduction, catalepsy bar test, automatically records time, remove forelimbs from bar, rat, OpenBehavior, Instrument is listed by: OpenBehavior
has parent organization: University of Guelph; Ontario; Canada
DOI:10.1523/eneuro.0488-19.2020 Free, Available for download, Freely available https://www.khokharlab.com/open-source-file-downloads SCR_021439 Catalepsy Bar 2026-02-13 10:58:31 0
Modular Automated Platform for Large Scale Experiments project
 
Resource Report
Resource Website
10+ mentions
Modular Automated Platform for Large Scale Experiments project (RRID:SCR_021557) MAPLE data or information resource, instrument resource, portal, project portal Portal related to measurement of fly social networks and behavior. Provides Drosophila handing robot that boasts modular design, allowing platform to both automate diverse phenotyping assays and aid with lab chores (e.g., collecting virgin female flies). MAPLE permits small part manipulator, USB digital camera, and fly manipulator to work simultaneously over platform of flies. Instrument, Drosophila handing robot, automate diverse phenotyping assays, collecting virgin female flies, USB digital camera, fly manipulator, flies modular automated platform, large scale experiments, OpenBehavior is listed by: OpenBehavior
is related to: Modular Automated Platform for Large Scale Experiments
DOI:10.1101/239459 Free, Freely available SCR_021557 Modular Automated Platform for Large -Scale Experiments 2026-02-13 10:58:34 41
Skinner Box project
 
Resource Report
Resource Website
Skinner Box project (RRID:SCR_021437) data or information resource, instrument resource, portal, project portal Project related to training animal behavior. Provides system which includes full behavioral apparatus and software platform. System includes software tool for data logging and analysis. Open Skinner Box, data logging, data analysis, behavioral system, OpenBehavior, Instrument is listed by: OpenBehavior
is related to: Skinner Box
Free, Freely available SCR_021437 Skinner Box 2026-02-13 10:58:32 0
ArControl project
 
Resource Report
Resource Website
ArControl project (RRID:SCR_021556) data or information resource, instrument resource, portal, project portal Portal related to delivering stimuli and monitoring responses. Provided behavioral platform was developed by scientists from Huazhong University of Science and Technology, Wuhan, China. System uses Arduino UNO board and simple drive circuit along with stand-along GUI application. Experimental data is automatically recorded with built-in data acquisition function and entire behavioral schedule is stored within Arduino chip. Instrument, behavioral platform, delivering stimuli, monitoring responses, OpenBehavior is listed by: OpenBehavior
is related to: ArControl
DOI:10.3389/fnbeh.2017.00244 Free, Freely available SCR_021556 ArtControl, Arduino Control Platform 2026-02-13 10:58:32 0
SnackClock
 
Resource Report
Resource Website
SnackClock (RRID:SCR_021554) data or information resource, instrument resource, portal, project portal Project related to feeding behavior.Provides device for dispensing pre-measured quantities of food at regular intervals throughout day. Device uses 24 hour clock movement to rotate dispenser wheel one revolution per day. Instrument, feeding behavior, dispensing pre-measured food quantities device, regular interval feeding, OpenBehavior is listed by: OpenBehavior
has parent organization: Washington University in St. Louis; Missouri; USA
Free, Freely available SCR_021554 2026-02-13 10:58:34 0
flyPAD project
 
Resource Report
Resource Website
flyPAD project (RRID:SCR_021449) data or information resource, instrument resource, portal, project portal Project related to analysis of behavior and of neural activity. Provides FPGA code for running main board of flyPAD. FPGA code, running main board of flyPAD, VHDL, Quartus 2, OpenBehavior, Instrument is listed by: OpenBehavior
is related to: flyPAD
DOI:10.1038/ncomms5560 Free, Freely available SCR_021449 flyPAD 2026-02-13 10:58:32 0
Automated Home-Cage Functional Imaging project
 
Resource Report
Resource Website
Automated Home-Cage Functional Imaging project (RRID:SCR_021567) data or information resource, instrument resource, portal, project portal Portal provides automated system for mesoscopic functional imaging that allows subjects to self initiate head fixation and imaging within home cage. Developed by University of British Columbia scientists. System for automated head fixation within mouse home cages. Instrument, mesoscopic functional imaging, self initiate head fixation, imaging within home cage, OpenBehavior is listed by: OpenBehavior
is related to: Automated Home-Cage Functional Imaging
has parent organization: University of British Columbia; British Columbia; Canada
DOI:10.1038/ncomms11611 Free, Freely available SCR_021567 Automated Home-Cage Functional Imaging system 2026-02-13 10:58:35 0
DeepBehavior
 
Resource Report
Resource Website
DeepBehavior (RRID:SCR_021414) data processing software, data analysis software, software toolkit, software application, software resource Software toolbox that automates taking high speed quality video to track behavior to analyze and track behavior in rodents and humans. track behavior, analyze and track behavior, rodent, human, automated analysis, imaging data, OpenBehavior is listed by: OpenBehavior
is related to: DeepBehavior project
DOI:10.3389/fnsys.2019.00020 Free, Available for download, Freely Available https://edspace.american.edu/openbehavior/project/deepbehavior/ SCR_021414 2026-02-13 10:58:32 0
Low Cost Open Source Eye Tracking project
 
Resource Report
Resource Website
Low Cost Open Source Eye Tracking project (RRID:SCR_021415) data or information resource, instrument resource, portal, project portal Project related to eye tracking system for human research.System includes open source software for accurate eye tracking. Can identify shapes such as circles, lines, and triangles.You can rotate and mirror images and also use variety of filters.Capable of processing video in real-time for optical flow. App for viewing multiple video streams from USB cameras. Real time eye tracking, identify shapes, identify circles, identify lines, identify triangles, fixed point laser beacons, camera, processing video in real time, OpenBehavior, Instrument is listed by: OpenBehavior
is related to: Low Cost Open Source Eye Tracking
Free, Freely available SCR_021415 Low Cost Open Source Eye Tracking 2026-02-13 10:58:31 0
Calcium ActiVity Explorer
 
Resource Report
Resource Website
1+ mentions
Calcium ActiVity Explorer (RRID:SCR_021498) CAVE data analysis software, software resource, data processing software, software application Open source tool for combined analysis of head mounted calcium imaging and behavior. Used to analyze imaging data from head mounted microscopes simultaneously with behavioral data. Head mounted calcium imaging, calcium imaging and behavior, calcium imaging, analyze imaging data, head mounted microscopes, behavioral data, OpenBehavior is listed by: OpenBehavior
is related to: Calcium ActiVity Explorer project
DOI:10.3389/fnins.2018.00958 Free, Available for download, Freely Available https://edspace.american.edu/openbehavior/project/cave/ SCR_021498 Calcium ActiVity Explorer 2026-02-13 10:58:32 2
idtracker.ai
 
Resource Report
Resource Website
idtracker.ai (RRID:SCR_021499) data analysis software, software resource, data processing software, software application Software tool as Python Video Annotator software.Agorithm and tracking software that features two deep networks.Tracks animal identification and tracks when animals touch or cross paths in front of one another. Python Video Annotator, animal identification tracking, animals touch tracking, tracking animal cross paths, OpenBehavior is listed by: OpenBehavior
is related to: idtracker.ai project
DOI:10.1038/s41592-018-0295-5 Free, Available for download, Freely Available https://edspace.american.edu/openbehavior/project/idtracker-ai/
https://idtrackerai.readthedocs.io/en/latest/
SCR_021499 2026-02-13 10:58:33 0
Touchscreen Cognition
 
Resource Report
Resource Website
Touchscreen Cognition (RRID:SCR_021550) data or information resource, instrument resource, portal, project portal Project related to cognitive testing method for rodents.Provides touchscreen operant platform for testing learning and memory in rats and mice.Includes device chambers that can be used to measure rodent behavior.Not open source device. Cognitive testing, rodent, touchscreen operant platform, learning testing, memory testing, rat, mice, device chamber, measure rodent behavior, OpenBehavior is listed by: OpenBehavior Free, Freely available SCR_021550 2026-02-13 10:58:32 0
ACRoBaT
 
Resource Report
Resource Website
ACRoBaT (RRID:SCR_021546) data or information resource, instrument resource, portal, project portal Project related to studying motor behavior. University of Washington in Seattle scientists have developed and published their device for training rats to perform modified center out task. Instrument, automated device, training rats, perform modified center out task, OpenBehavior is listed by: OpenBehavior
has parent organization: University of Washington; Seattle; USA
DOI:10.1016/j.bbr.2017.11.031 Free, Freely available SCR_021546 Automated Center out Rodent Behavioral Trainer 2026-02-13 10:58:34 0
EthoScopes project
 
Resource Report
Resource Website
EthoScopes project (RRID:SCR_021426) data or information resource, instrument resource, portal, project portal Project related to analysis of behavior in Drosophila.Provides system capable of real time video tracking. System includes raspberry pi and R package for data analysis. Enables high throughput analysis of behavior in Drosophila and other animals. Data analysis, ethoscope platform, behavior analysis, Drosophila analysis, animals behavior analysis, OpenBehavior, Instrument is listed by: OpenBehavior
is related to: EthoScopes
DOI:10.1371/journal.pbio.2003026 Free, Freely available SCR_021426 EthoScopes 2026-02-13 10:58:31 0
Picamera project
 
Resource Report
Resource Website
Picamera project (RRID:SCR_021423) data or information resource, instrument resource, portal, project portal Project related to tracking animals in large spaces. Picamera system allows for tracking of animals in large behavioral arenas.Open source scalable multi camera tracking system that can be used to track behavior in combination with wireless recording systems.Design is comprised of 8 overhead Raspberry Pi cameras, capable of recording at high frame rate in large field of view, recording video independently in individual Raspberry Pi microcomputers and processed using Picamera Python library. Tracking rats in large spaces, camera system, Picamera Python library, OpenBehavior, Instrument is listed by: OpenBehavior DOI:10.1152/jn.00215.2018 Free, Freely available SCR_021423 Picamera 2026-02-13 10:58:31 0
Visual stimulator with customizable light spectra
 
Resource Report
Resource Website
Visual stimulator with customizable light spectra (RRID:SCR_021545) data or information resource, instrument resource, portal, project portal Project related to visual neuroscience.Provides spatial visual stimulator with arbitrary spectrum of light for visual neuroscientists.Open source, low cost visual stimulator which can be customized with up to 6 chromatic channels. Spectrum of light can be arbitrary and customizable to be adapted to different animal models based on their visual spectrum. Device details, including parts list and information for custom python library for generating visual stimuli (QDSpy), can be found in eLife publication. Instrument, Visual stimulator, spatial visual stimulator, spectrum of light, visual neuroscience, OpenBehavior is listed by: OpenBehavior DOI:10.7554/elife.48779 Commercially available SCR_021545 2026-02-13 10:58:32 0
Live Mouse Tracker project
 
Resource Report
Resource Website
Live Mouse Tracker project (RRID:SCR_021421) LMT data or information resource, instrument resource, portal, project portal Project related to monitoring social interactions of mice. Provides real time behavioral analysis system for groups of mice.System includes random forest machine learning process, RFID sensors and infrared depth RGB-D camera.System includes software tool for Live Mouse Tracker analysis. Behavioral analysis system, groups of mice, assess complex social behavioral, differences between mice, , lmt-analysis, OpenBehavior, Instrument is listed by: OpenBehavior
is related to: Live Mouse Tracker analysis
is related to: Live Mouse Tracker Toolkit Analysis
DOI:s41551-019-0396-1 Free, Freely available SCR_021421 Live Mouse Tracker 2026-02-13 10:58:31 0
OpenVape project
 
Resource Report
Resource Website
1+ mentions
OpenVape project (RRID:SCR_021485) data or information resource, instrument resource, portal, project portal Project related to conducting research on effects of nicotine vapor. Provides open source chamber system for rodents to experience regulated nicotine vapor exposure from JUUL electronic cigarette.Vapor exposure apparatus comprised of Arduino Uno microcontroller that relays coded instructions to H-bridge motor controller.H-bridge then sends specific signals to motors that regulate produced vapor sent to exposure chambers. Regulated nicotine vapor exposure, JUUL electronic cigarette, vapor exposure apparatus, Arduino Uno microcontroller, H-bridge motor controller, exposure chamber, rodent nicotine exposure, OpenBehavior, Instrument is listed by: OpenBehavior
has parent organization: University of Guelph; Ontario; Canada
DOI:10.1523/eneuro.0279-20.2020 Free, Available for download, Freely available https://www.khokharlab.com/open-source-file-downloads SCR_021485 OpenVape 2026-02-13 10:58:33 1
An open source motorized swivel for in vivo neural and behavioral recordings project
 
Resource Report
Resource Website
An open source motorized swivel for in vivo neural and behavioral recordings project (RRID:SCR_021482) data or information resource, instrument resource, portal, project portal Project related to neural recordings such as electrophysiology, calcium imaging, and optogenetics. Provides 3D-printed, motorized commutator for neural recordings of small animals in vivo.Open source motorized swivel for in vivo neural and behavioral recordings.Device operates independently of data acquisition system, and it can be controlled through any popular platform such as Arduino or Raspberry Pi. Motorized commutator, neural recordings, small animals in vivo recording, motorized swivel, behavioral recordings, OpenBehavior, Instrument is listed by: OpenBehavior DOI:10.1016/j.mex.2020.101167 Free, Freely available SCR_021482 An open source motorized swivel for in vivo neural and behavioral recordings 2026-02-13 10:58:31 0
Pyper
 
Resource Report
Resource Website
1+ mentions
Pyper (RRID:SCR_021511) image processing software, software resource, data processing software, software application Software tool for motion tracking.Provides real time or pre recorded motion tracking of specimen in open field. Used to track path of object of interest in live feed from camera or recorded video. Used to track rodents in open field maze as well as retina of mice.New version v2 of Pyper allows to customise image processing to track different kind of objects. Motion tracking, open field, track path of object, live feed from camera, live feed recorded video, track rodents, open field maze, OpenBehavior is listed by: OpenBehavior
is related to: Pyper project
Free, Available for download, Freely Available https://edspace.american.edu/openbehavior/project/pyper/ SCR_021511 Pyper v2 2026-02-13 10:58:33 2

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