Tools   Select Another Resource Report Type

https://github.com/JosePardoVazquez/RatHeadphones

Repository for highly controlled sound presentation in freely moving rats. Provides all necessary information for building, adjusting, and using Ratphones to reliably present auditory stimulation to freely moving rats. Used for 3D printing of headphones designed for auditory psychophysics in behaving rats.

Proper citation: RatHeadphones (RRID:SCR_023667) Copy   

•   Source: SciCrunch Registry

https://www.eneuro.org/content/12/2/ENEURO.0444-24.2025

Low-cost implant for reliable diaphragm EMG recordings in awake, behaving rats.Diaphragm EMG implant.

Proper citation: Implant for Reliable Diaphragm EMG Recordings in Awake, Behaving Rats (RRID:SCR_026968) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/ort/

Open-source apparatus to enable continuous individual monitoring, training, and testing of rats without removing them from their social environment. This system utilizes RFID technology to track individual animals, minimizing human intervention and providing precise behavioral data.

Proper citation: One-rat Turnstile (RRID:SCR_025570) Copy   

•   Source: SciCrunch Registry

https://github.com/DepartmentofNeurophysiology/Matlab-Whisker-Tracker

Shared database of videos featuring juvenile and adult male rats and adult male mice exploring stationary objects.This dataset includes wide variety of experimental conditions including genetic, pharmacological, and sensory deprivation interventions to explore how active sensing behavior is modulated by different factors. Database of high speed videos of whisking behavior in freely moving rodents.Open source high speed infrared videography database to study principles of active sensing in freely navigating rodents.

Proper citation: Open Source Whisking Video Database (RRID:SCR_021407) Copy   

•   Source: SciCrunch Registry

https://github.com/ntorquet/lmt_toolkit_analysis

Open source web application created to analyze Live Mouse Tracker data easily and intuitively. Used to check reliability and to make some analysis of data from Live Mouse Tracker experiments. LMT stores data in SQLite files that requires some computer skills, but LMT-toolkit makes it easy to compute and extract behavioral profiles for each animal tested following step-by-step process.

Proper citation: Live Mouse Tracker Toolkit Analysis (RRID:SCR_024592) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/spikeforest/

Project related to neural data analysis. Provides open-source and reproducible software suite that benchmarks performance of automated spike sorting algorithms across extensive, curated database of ground truth electrophysiological recordings, displaying results interactively on continuously updating website.

Proper citation: Spike Forest project (RRID:SCR_021472) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/pypreclin/

Project related to preprocessing of images. Provieds software Python tool to processes raw macaque fMRI images using algorithms embedded in automatic pipeline.

Proper citation: Pypreclin project (RRID:SCR_021473) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/mne-scan/

Project related to real time acquisition and processing of electrophysiological data.Provides software tool for acquisition and processing of electrophysiological data.

Proper citation: MNE Scan project (RRID:SCR_021470) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/3dtracker/, http://www.3dtracker.org/

Project related to markerless computerized behavioral analysis for laboratory animals.Provides open source 3D video based behavioral analysis system for neuroscience. System includes open source software tool for 3D-video based markerless computerized behavioral analysis.

Proper citation: 3DTracker project (RRID:SCR_021440) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/lincom/

Project related to animal behavior in complex mazes.Provides software MATLAB package for linearization of place fields in complex mazes.

Proper citation: LinCoM project (RRID:SCR_021438) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/ethowatcher/

Project related to video tracking, detailed ethography, and extraction of kinematic variables from digital video files of laboratory animals.Provides computational tool developed at Federal University of Santa Catarina.

Proper citation: EthoWatcher project (RRID:SCR_021435) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/automated-rodent-tracker-art/

Project related to development of automated rodent tracking position and movement. Provides software tool to automatically track rodent.Used to track head movements, body movements and also aspects of body size.Identifies certain behaviours from video footage, such as rotations, moving forwards, interacting with objects and staying still.

Proper citation: Automated Rodent Tracker project (RRID:SCR_021432) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/deepsqueak/

Project related to rodent social communication through repertoire of ultrasonic vocalizations. Provides deep learning based system for quantification of Ultrasonic Vocalizations.Includes software MATLAB package for high throughput USV detection, classification, and analysis.

Proper citation: DeepSqueak project (RRID:SCR_021450) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/rigbox/

Project related to streamlining behavioral neuroscience experiments.Provides open source software MATLAB toolbox for running behavioral neuroscience experiments and managing data.Used for probing neurons and behavior.

Proper citation: Rigbox project (RRID:SCR_021444) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/oat/

Project related to processing video, extracting object position information, and streaming data.Provides set of programs for processing video for behavioral research. Includes OAT software tool as real time position tracker which was developed by Massachusetts Institute of Technology scientists.

Proper citation: Online Animal Tracker project (RRID:SCR_021386) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/b-soid-unsupervised-behavior-analysis/

Project related to unsupervised behavior analysis.Carnegie Mellon University has shared B-SOiD, open source unsupervised algorithm for discovery of spontaneous behaviors. Includes software pipeline that pairs unsupervised pattern recognition with supervised classification to achieve fast predictions of behaviors that are not predefined by users.

Proper citation: Behavioral Segmentation of Open-field in DeepLabCut project (RRID:SCR_021410) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/simba/

University of Washington project SimBA for analysis of complex social behaviors.Used for automated behavioral scoring. Includes open source software toolkit for computer classification of complex social behaviors in experimental animals. Uses data from popular open source tracking tools in combination with small amount of behavioral annotations to create supervised machine learning classifiers that can then rapidly and accurately score behaviors across different background settings and lighting conditions.

Proper citation: Simple Behavior Analysis project (RRID:SCR_021411) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/eztrack/

Project related to behavior analysis.Mt.Sinai scientist developed open source video analysis pipeline for investigation of animal behavior.Used to track location, motion, and freezing of animal.

Proper citation: ezTrack project (RRID:SCR_021418) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/freemovr/

Portal related to virtual reality for freely moving animals.Provides virtual reality system set up for unrestrained animals.System developed by University of Frieburg scientists. This Virtual Reality system can be used with number of different species including mice, zebrafish, and Drosophila.

Proper citation: FreemoVR project (RRID:SCR_021551) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/deeplabcut/

Project for markerless pose estimation of user defined body parts with deep learning.

Proper citation: DeepLabCut Project (RRID:SCR_021398) Copy   

•   Source: SciCrunch Registry