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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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3D Printed Multi Pump System Resource Report Resource Website |
3D Printed Multi Pump System (RRID:SCR_023575) | instrument resource | System includes 3D Printed Syringe Pump Rack composed by 5 Syringe Pumps to have 2 continuous flow systems and one remaining pump. Syringe Pump is used to gradually administer small amounts of fluid to patient or for use in chemical and biomedical research. Main features include Open hardware/software, Extremely compact size ( 7cm movement range ), High precision lead screw and nut, Simple to use (command line interface), Simple to replicate, Minimal clean Design. | 3D Printed Syringe Pump Rack, Syringe Pumps, continuous flow system, OpenBehavior | is listed by: OpenBehavior | Freely available, Available for download, | https://edspace.american.edu/openbehavior/project/3d-printed-multi-pump-system/ | SCR_023575 | 3D Printed Syringe Pump Rack | 2026-02-14 02:05:07 | 0 | ||||||||
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Open Source Whisking Video Database Resource Report Resource Website |
Open Source Whisking Video Database (RRID:SCR_021407) | data or information resource, database | Shared database of videos featuring juvenile and adult male rats and adult male mice exploring stationary objects.This dataset includes wide variety of experimental conditions including genetic, pharmacological, and sensory deprivation interventions to explore how active sensing behavior is modulated by different factors. Database of high speed videos of whisking behavior in freely moving rodents.Open source high speed infrared videography database to study principles of active sensing in freely navigating rodents. | High speed videos, whisking behavior, freely moving rodents, infrared videography database, active sensing, OpenBehavior |
is listed by: OpenBehavior is related to: Open Source Whisking Video Database portal |
DOI:10.1093/gigascience/giy134 | Free, Freely available | https://edspace.american.edu/openbehavior/project/open-source-whisking-video-database/ | SCR_021407 | 2026-02-14 02:06:49 | 0 | ||||||||
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One-rat Turnstile Resource Report Resource Website |
One-rat Turnstile (RRID:SCR_025570) | ORT | instrument resource | Open-source apparatus to enable continuous individual monitoring, training, and testing of rats without removing them from their social environment. This system utilizes RFID technology to track individual animals, minimizing human intervention and providing precise behavioral data. | OpenBehavior, apparatus, continuous individual monitoring, training, testing, rat, without removing from social environment, | is listed by: OpenBehavior | PMID:38557586 | SCR_025570 | One-rat Turnstile (ORT) | 2026-02-14 02:09:20 | 0 | ||||||||
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LocoMouse Resource Report Resource Website |
LocoMouse (RRID:SCR_021397) | software application, data processing software, data analysis software, software resource | Software kinematics analysis tool used to study movement coordination and analyzing limb, head, and tail kinematics of freely walking mice. | Movement study, movementcoordination, free walking mice, OpenBehavior |
is listed by: OpenBehavior is related to: Locomouse project |
DOI:10.7554/elife.07892 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/locomouse/ | SCR_021397 | 2026-02-15 09:22:33 | 0 | ||||||||
|
BonZeb Resource Report Resource Website |
BonZeb (RRID:SCR_021392) | software application, data processing software, data analysis software, software resource | Open source, modular software tools for high resolution zebrafish tracking and analysis.Software suite of Bonsai modules for specifically tracking and analyzing zebrafish movements and integrating these data with closed loop experiments.Can be used in open loop fashion for collecting, analyzing, and integrating data from multiple sources in real time, or from offline sources for batch processing of pre-recorded data. | Tacking and analyzing zebrafish movements, integrating zebrafish movements data with closed loop experiments, zebrafish movements, OpenBehavior |
is listed by: OpenBehavior is related to: BonZeb project |
DOI:10.1038/s41598-021-85896-x | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/bonzeb/ | SCR_021392 | 2026-02-15 09:22:28 | 0 | ||||||||
|
EthoScopes Resource Report Resource Website 1+ mentions |
EthoScopes (RRID:SCR_021507) | software application, data processing software, data analysis software, software resource | Software R package for data analysis.Enables high throughput analysis of behavior in Drosophila and other animals. | Data analysis, ethoscope platform, behavior analysis, Drosophila analysis, animals behavior analysis, OpenBehavior |
is listed by: OpenBehavior is related to: EthoScopes project |
DOI:10.1371/journal.pbio.2003026 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/ethoscopes/ | SCR_021507 | Ethoscope | 2026-02-15 09:22:31 | 1 | |||||||
|
Calcium ActiVity Explorer Resource Report Resource Website 1+ mentions |
Calcium ActiVity Explorer (RRID:SCR_021498) | CAVE | software application, data processing software, data analysis software, software resource | Open source tool for combined analysis of head mounted calcium imaging and behavior. Used to analyze imaging data from head mounted microscopes simultaneously with behavioral data. | Head mounted calcium imaging, calcium imaging and behavior, calcium imaging, analyze imaging data, head mounted microscopes, behavioral data, OpenBehavior |
is listed by: OpenBehavior is related to: Calcium ActiVity Explorer project |
DOI:10.3389/fnins.2018.00958 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/cave/ | SCR_021498 | Calcium ActiVity Explorer | 2026-02-15 09:22:36 | 2 | ||||||
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idtracker.ai Resource Report Resource Website |
idtracker.ai (RRID:SCR_021499) | software application, data processing software, data analysis software, software resource | Software tool as Python Video Annotator software.Agorithm and tracking software that features two deep networks.Tracks animal identification and tracks when animals touch or cross paths in front of one another. | Python Video Annotator, animal identification tracking, animals touch tracking, tracking animal cross paths, OpenBehavior |
is listed by: OpenBehavior is related to: idtracker.ai project |
DOI:10.1038/s41592-018-0295-5 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/idtracker-ai/ https://idtrackerai.readthedocs.io/en/latest/ |
SCR_021499 | 2026-02-15 09:22:30 | 0 | ||||||||
|
Pathfinder Resource Report Resource Website 100+ mentions |
Pathfinder (RRID:SCR_021520) | software application, data processing software, data analysis software, software resource | Open source software for analyzing spatial navigation search strategies. | Analyzing spatial navigation search strategies, spatial navigation, search strategies, OpenBehavior |
is listed by: OpenBehavior is related to: Pathfinder project |
DOI:10.1101/715961 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/pathfinder/ | SCR_021520 | 2026-02-15 09:22:36 | 225 | ||||||||
|
Live Mouse Tracker Toolkit Analysis Resource Report Resource Website |
Live Mouse Tracker Toolkit Analysis (RRID:SCR_024592) | LMT Toolkit | web application, software resource | Open source web application created to analyze Live Mouse Tracker data easily and intuitively. Used to check reliability and to make some analysis of data from Live Mouse Tracker experiments. LMT stores data in SQLite files that requires some computer skills, but LMT-toolkit makes it easy to compute and extract behavioral profiles for each animal tested following step-by-step process. | OpenBehavior, check LMT data reliability, analyze Live Mouse Tracker data, compute and extract behavioral profiles, |
is listed by: OpenBehavior is related to: Live Mouse Tracker analysis is related to: Live Mouse Tracker project |
Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/live-mouse-tracker/ | SCR_024592 | , LMT Toolkit, lmt toolkit analysis, LMT toolkit analysis, LMT-toolkit, LMT-Toolkit Analysis, Live Mouse Tracker Toolkit | 2026-02-15 09:22:45 | 0 | |||||||
|
DeepEthogram Resource Report Resource Website 1+ mentions |
DeepEthogram (RRID:SCR_022355) | DEG | software application, data processing software, data analysis software, software resource | Software tool to extract relevant features from images and use time series of these features to classify whether given behavior is present in each frame of video recording.machine learning pipeline for supervised behavior classification from raw pixels. Performs action recognition ,automated behavior classification, over frames. Used for automated behavior classification to detect and track behavior over time. | OpenBehavior, behavioral data analysis, video analysis, offline analysis software, behavior measurement, supervised behavior classification from raw pixels | is listed by: OpenBehavior | DOI:10.7554/eLife.63377 | Free, Available for download, Freely available | https://github.com/jbohnslav/deepethogram | SCR_022355 | 2026-02-15 09:22:52 | 3 | |||||||
|
DeepBhvTracking Resource Report Resource Website 1+ mentions |
DeepBhvTracking (RRID:SCR_022351) | software application, data processing software, data analysis software, software resource | Software tool as novel tracking algorithm that combines deep learning and background subtraction. | OpenBehavior, movement tracking, locomotion and environmental interaction measure, behavior tracking method for laboratory animals | is listed by: OpenBehavior | DOI:10.3389/fnbeh.2021.750894 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/deepbhvtracking/ | SCR_022351 | 2026-02-15 09:22:52 | 1 | ||||||||
|
Behavior Ensemble and Neural Trajectory Observatory Resource Report Resource Website 1+ mentions |
Behavior Ensemble and Neural Trajectory Observatory (RRID:SCR_022348) | BENTO | software application, data processing software, data analysis software, software resource | Software Matlab based tool to visualize and analyze multimodal datasets. | OpenBehavior, behavioral data analysis, neural signal analysis, video analysis, offline analysis software |
is listed by: OpenBehavior has parent organization: Northwestern University; Illinois; USA |
DOI:10.7554/eLife.63720 | Free, Available for download, Freely available | https://github.com/neuroethology/bentoMAT | SCR_022348 | 2026-02-15 09:22:14 | 1 | |||||||
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MARS Developer Resource Report Resource Website |
MARS Developer (RRID:SCR_022346) | software application, data processing software, data analysis software, software resource | Software MARS based Python pipeline used for detection, pose estimation and behavior classification in experiments of any format. Repository contains all the code you'll need to train your own version of MARS. | OpenBehavior, behavior measurement, freely-moving, video analysis, realtime recording and analysis, offline analysis software |
is listed by: OpenBehavior is related to: Mouse Action Recognition System has parent organization: Northwestern University; Illinois; USA |
DOI:10.7554/eLife.63720 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/neuroethology-tools/ | SCR_022346 | 2026-02-15 09:22:43 | 0 | ||||||||
|
VocalMat Resource Report Resource Website 1+ mentions |
VocalMat (RRID:SCR_022342) | software application, data processing software, data analysis software, software resource | Software MATLAB based toolbox for automated quantitative analysis of ultrasonic vocalizations. Utilizes image processing libraries to detect USVs and computational vision and machine learning algorithms to classify detected USVs. Used for analysis of ultrasonic vocalizations from mice using computer vision and machine learning. | OpenBehavior, ultrasonic vocalizations, mice, behavioral data analysis | is listed by: OpenBehavior | DOI:10.7554/eLife.59161 | Free, Available for download, Freely available | https://github.com/ahof1704/VocalMat | SCR_022342 | 2026-02-15 09:22:43 | 1 | ||||||||
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Permuco Resource Report Resource Website 1+ mentions |
Permuco (RRID:SCR_022341) | software application, data processing software, data analysis software, software resource | Software R package for permutation test in linear model with nuisances variables.Used for permutation testing in regression, ANOVA, and comparison of signals. | OpenBehavior, permutation testing in regression | is listed by: OpenBehavior | DOI:10.18637/jss.v099.i15 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/dabest-and-permuco/ https://github.com/jaromilfrossard/permuco |
SCR_022341 | 2026-02-15 09:22:49 | 2 | ||||||||
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DABEST Resource Report Resource Website 1+ mentions |
DABEST (RRID:SCR_022340) | software application, data processing software, data analysis software, software resource | Software package for data analysis using bootstrap coupled estimation. Library combining Python, R, and MATLAB for estimation statistics. | OpenBehavior, bootstrap coupled estimation, estimation statistics | is listed by: OpenBehavior | DOI:10.1038/s41592-019-0470-3 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/dabest-and-permuco/ | SCR_022340 | Data Analysis with Bootstrapped ESTimation | 2026-02-15 09:22:14 | 6 | |||||||
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GazeMetrics Resource Report Resource Website |
GazeMetrics (RRID:SCR_022338) | software application, data processing software, data analysis software, software resource | Software tool for data extraction and computation of spatial accuracy and precision of head mounted display based eye trackers. Allows for significant customization without altering source code but changes to the code allow for further alteration. | OpenBehavior, eye tracking, behavioral measure, head mounted display based eye trackers, data samples extraction, accuracy and precision calculation |
is listed by: OpenBehavior has parent organization: University of Nevada at Reno; Nevada; USA |
DOI:10.1145/3379156.3391374 | Free, Available for download, Freely available | https://github.com/isayasMatter/GazeMetrics | SCR_022338 | 2026-02-15 09:22:43 | 0 | ||||||||
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LED Zappelin’ Resource Report Resource Website |
LED Zappelin’ (RRID:SCR_022560) | data or information resource, topical portal, portal | Open source LED controller for arbitrary spectrum visual stimulation and optogenetics during 2 photon imaging. Device that rapidly time interleaves stimulation and detection epochs during two photon imaging. | Instrument, OpenBehavior, LED controller, arbitrary spectrum visual stimulation, optogenetics, two photon imaging, stimulation and detection, behavioral neuroscience |
is listed by: OpenBehavior has parent organization: University of Sussex; Brighton; United Kingdom |
PMID:35498254 | Free, Freely available | https://edspace.american.edu/openbehavior/project/led-zappelin/ | SCR_022560 | 2026-02-15 09:22:53 | 0 | ||||||||
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OpenSync Resource Report Resource Website |
OpenSync (RRID:SCR_022722) | software application, data processing software, data analysis software, software resource | Open source platform for synchronizing multiple behavioral and physiological signals in neuroscience experiments. | synchronizing multiple behavioral and physiological signals, behavioral and physiological measures, synchronizing signals, neuroscience experiments, OpenBehavior |
is listed by: OpenBehavior has parent organization: Texas A and M University; Texas; USA |
Free, Available for download, Freely available | https://github.com/moeinrazavi/OpenSync/wiki https://edspace.american.edu/openbehavior/?s=OpenSync |
SCR_022722 | 2026-02-15 09:22:51 | 0 |
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