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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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ECO Resource Report Resource Website 10+ mentions |
ECO (RRID:SCR_002477) | ECO | data or information resource, ontology, controlled vocabulary | A controlled vocabulary that describes types of scientific evidence within the realm of biological research that can arise from laboratory experiments, computational methods, manual literature curation, and other means. Researchers can use these types of evidence to support assertions about research subjects that result from scientific research, such as scientific conclusions, gene annotations, or other statements of fact. ECO comprises two high-level classes, evidence and assertion method, where evidence is defined as a type of information that is used to support an assertion, and assertion method is defined as a means by which a statement is made about an entity. Together evidence and assertion method can be combined to describe both the support for an assertion and whether that assertion was made by a human being or a computer. However, ECO can not be used to make the assertion itself; for that, one would use another ontology, free text description, or other means. ECO was originally created around the year 2000 to support gene product annotation by the Gene Ontology. Today ECO is used by many groups concerned with provenance in scientific research. ECO is used in AmiGO 2 | evidence, assertion, assertion method, gene product, obo, evidence code, experiment, similarity, provenance |
is listed by: BioPortal is related to: AmiGO is related to: Gene Ontology has parent organization: University of Maryland School of Medicine; Maryland; USA has parent organization: Google Code |
NIGMS GM089636 | Free, Available for download, Freely available | nlx_155860 | http://code.google.com/p/evidenceontology/ http://bioportal.bioontology.org/ontologies/ECO |
SCR_002477 | Evidence Codes Ontology, Evidence Ontology, evidenceontology, The Evidence Ontology | 2026-02-17 09:59:57 | 19 | |||||
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Medical image simulation Resource Report Resource Website 1+ mentions |
Medical image simulation (RRID:SCR_010355) | OntoVIP | data or information resource, ontology, controlled vocabulary | Ontology that describes the content of the models used in medical image simulation developed in the context of the Virtual Imaging Platform project (VIP), a french project aiming at sharing medical image simulation resources. This ontology can be used to annotate such models in order to highlight the different entities that are present in the 3D scene to be imaged, i.e. anatomical structures, pathological structures, foreign bodies, contrast agents etc. The model allows also to associate to these entities information about their physical qualities, which are used in the medical image simulation process (to mimick physical phenomena involved in CT, MR, US and PET imaging). This ontology partly relies on the OntoNeuroLOG ontology (ONL-DP ONL-MR-DA), as well as PATO, RadLex, FMA and ChEBI. | owl | is listed by: BioPortal | French National Research Agency ANR-09-COSI-03 | nlx_157472 | SCR_010355 | 2026-02-17 10:01:27 | 3 | ||||||||
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Mental State Assessment Resource Report Resource Website 1+ mentions |
Mental State Assessment (RRID:SCR_010357) | ONL-MSA | data or information resource, ontology, controlled vocabulary | Ontology that is a module of the OntoNeuroLOG ontology that covers the field of mental state assessments, i.e. instruments, instrument variables, assessments, and resulting scores, developed in the context of the NeuroLOG project, a french project aiming at integrating distributed heterogeous resources in neuroimaging. It includes a generic domain core ontology, that provides a general model of such entities and a general taxonomy of behavioural, neurosychological and neuroclinical instruments, that can be easily extended to model any particular kind of instrument. It also includes such extensions for 8 relatively standard instruments, namely: (1) the Beck-depression-inventory-(BDI-II), (2) the Expanded-Disability-Status-Scale, (3) the Controlled-oral-word-association-test, (4) the Free-and-Cued-Selective-Reminding-Test-with-Immediate-Recall-16-item-version-(The-Grober-and-Buschke-test), (5) the Mini-Mental-State, (6) the Stroop-color-and-word-test, (7) the Trail-making-test-(TMT), (8) the Wechsler-Adult-Intelligence-Scale-third-edition, (9) the Clinical-Dementia-Rating-scale, (10) the Category-verbal-fluency, (11) the Rey-Osterrieth-Complex-Figure-Test-(CFT). | owl neuroimaging, mri, mental state assessment | is listed by: BioPortal | French National Research Agency ANR-06-TLOG-024 | nlx_157474 | SCR_010357 | MSA ontology | 2026-02-17 10:01:43 | 1 | |||||||
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Metagenome Sample Vocabulary Resource Report Resource Website |
Metagenome Sample Vocabulary (RRID:SCR_010358) | MSV | data or information resource, ontology, controlled vocabulary | An ontology for metagenome sample metadata that mainly defines predicates. | owl | is listed by: BioPortal | nlx_157475 | SCR_010358 | 2026-02-17 10:01:50 | 0 | |||||||||
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Mosquito Gross Anatomy Ontology Resource Report Resource Website |
Mosquito Gross Anatomy Ontology (RRID:SCR_003839) | TGMA | data or information resource, ontology, controlled vocabulary | A structured controlled vocabulary of the anatomy of mosquitoes. | obo | is listed by: BioPortal | nlx_157485 | SCR_003839 | 2026-02-17 10:00:27 | 0 | |||||||||
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CPTAC Proteomics Pipeline Infrastructure Ontology Resource Report Resource Website |
CPTAC Proteomics Pipeline Infrastructure Ontology (RRID:SCR_006945) | CPTAC | data or information resource, ontology, controlled vocabulary | A basic ontology which describes the proteomics pipeline infrastructure for CPTAC project | owl | is listed by: BioPortal | nlx_157349 | SCR_006945 | 2026-02-17 10:01:01 | 0 | |||||||||
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Provisional Cell Ontology Resource Report Resource Website 1+ mentions |
Provisional Cell Ontology (RRID:SCR_018332) | PCL | data or information resource, ontology, portal, controlled vocabulary | Collection of ontology of provisional cells determined by experimental methods. | Ontology, provisional cell, experimental method, BioPortal |
is related to: BioPortal is related to: BioPortal Metadata Ontology |
Free, Freely available | SCR_018332 | Provisional Cell Ontology | 2026-02-17 10:03:47 | 3 | ||||||||
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Mathematical Modelling Ontology Resource Report Resource Website |
Mathematical Modelling Ontology (RRID:SCR_000910) | MAMO | data or information resource, ontology, controlled vocabulary | Ontology that is a classification of the types of mathematical models used mostly in the life sciences, their variables, relationships and other relevant features. | owl | is listed by: BioPortal | nlx_157467 | SCR_000910 | 2026-02-17 09:59:32 | 0 | |||||||||
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Stanford University; Stanford; California Resource Report Resource Website 50+ mentions |
Stanford University; Stanford; California (RRID:SCR_011538) | university | Private, non profit university in Stanford, California, USA for research and undergraduate and graduate studies. Known for its academic strength, wealth, proximity to Silicon Valley, and ranking as one of the world's top universities. Particularly noted for its entrepreneurship and is one of the most successful universities in attracting funding for start-ups. | private, university, institution, undergraduate, program, resource, graduate |
uses: ShareLaTeX uses: ReadCube uses: Scizzle uses: Sparrho uses: GenomeCompiler uses: LabArchives is affiliated with: Integrative Human Microbiome Project is affiliated with: Diabetes Epigenome Atlas is related to: Stanford Research Institute International is related to: Alzheimers Disease Genetics Consortium is related to: Beta Cell Biology Consortium is related to: Clinical and Translational Science Awards Consortium is related to: ShareLaTeX is related to: LabArchives is related to: Diabetic Foot Consortium is related to: GENSCAN is related to: Center for Expanded Data Annotation and Retrieval is parent organization of: MAXCHELATOR is parent organization of: Sea Urchin Embryology is parent organization of: SNPiR is parent organization of: GERP is parent organization of: Wnt homepage is parent organization of: Biozon is parent organization of: VectorDB- Molecular Biology Vector Sequence Database is parent organization of: HighWire Press is parent organization of: BFCounter is parent organization of: Clarity resources is parent organization of: PoissonSeq is parent organization of: Flybrain at Stanford is parent organization of: Stanford Genomics Service Center Core Facility is parent organization of: STRUCTURE is parent organization of: RVD is parent organization of: OpenSim is parent organization of: PharmGKB is parent organization of: JETTA is parent organization of: Phoenix is parent organization of: WEBMAXC STANDARD is parent organization of: Ontology Development and Information Extraction is parent organization of: Stanford Translational Research Integrated Database Environment and Clinical Data Warehouse is parent organization of: Phenotree is parent organization of: Quantitative Enrichment of Sequence Tags is parent organization of: WholeCellKB is parent organization of: Simbios is parent organization of: Neurogrid is parent organization of: T-lex is parent organization of: HighWire is parent organization of: Tissue Microarray Database is parent organization of: Stanford TMA Software is parent organization of: TMA-Combiner is parent organization of: Stanford Center for Biomedical Informatics Research is parent organization of: amide is parent organization of: Wnt Database is parent organization of: OligoGenome is parent organization of: HyBrow (Hypothesis Browser) is parent organization of: DataWrangler is parent organization of: BenchWise is parent organization of: Neurobiological Image Management System is parent organization of: Target genes of Wnt/beta-catenin signaling is parent organization of: HPMR - Human Plasma Membrane Receptome is parent organization of: LPFC: A Library of Protein Family Cores is parent organization of: YDPM - Yeast Deletion Project is parent organization of: SimTKCore is parent organization of: Postdoctoral Program for Veterinarians is parent organization of: Alizadehlab: MeeboChip and HeeboChip Open Source Project is parent organization of: Q-Value Software is parent organization of: LAGAN is parent organization of: xjView: A Viewing Program For SPM is parent organization of: Exon Array Browser is parent organization of: Coursera is parent organization of: iPOP is parent organization of: SSRL Structural Molecular Biology is parent organization of: SpliceMap is parent organization of: MAPP is parent organization of: SAM is parent organization of: Stanford University School of Medicine; California; USA is parent organization of: ProbCons is parent organization of: Genovo is parent organization of: American Parkinson's Disease Association Information and Referral Center is parent organization of: Sequencing of Candida Albicans is parent organization of: Jambalaya is parent organization of: Simbiome is parent organization of: SciTran is parent organization of: Brain RNA-Seq is parent organization of: CytoSPADE is parent organization of: BioPortal is parent organization of: Research Network in Early Experience and Brain Development is parent organization of: STOP is parent organization of: NCBO Annotator is parent organization of: PubSearch is parent organization of: EM3D is parent organization of: Joint Center for Structural Genomics is parent organization of: ToRNADo is parent organization of: SGD is parent organization of: Stanford CNI is parent organization of: Stanford CoreNLP is parent organization of: GenomeSpace is parent organization of: Encode is parent organization of: OpenNeuro is parent organization of: Poldracklab Portal is parent organization of: Diabetes Epigenome Atlas is parent organization of: MrDiffusion is parent organization of: Stanford Center for Reproducible Neuroscience is parent organization of: Stanford Diabetes Research Center Diabetes Genomics Analysis Core is parent organization of: Biostrings is parent organization of: CIBERSORT is parent organization of: Shannon is parent organization of: VORTEX is parent organization of: Optogenetics Resource Center is parent organization of: Brain RNA-Seq is parent organization of: LeafCutter is parent organization of: Stanford University Vincent Coates Foundation Mass Spectrometry Laboratory Core Facility is parent organization of: Stanford University Human Immune Monitoring Center Core Facility is parent organization of: Preseq is parent organization of: CRISPR-ERA is parent organization of: WEBMAXC EXTENDED is parent organization of: Stanford Graduate School of Business Data, Analytics, and Research Computing Core Facility is parent organization of: Stanford University Community of Shared Advanced Research Platforms is parent organization of: Stanford Sarafan Chemistry, Engineering and Medicine for Human Health Knowledge Centers Core Facility is parent organization of: Stanford Sarafan Protein Engineering Knowledge Center Core Facility is parent organization of: Stanford Sarafan Metabolomics Knowledge Center Core Facility is parent organization of: Stanford Nanofabrication Core Facility is parent organization of: Stanford Sarafan Macromolecular Structure Knowledge Center Core Facility is parent organization of: Stanford Sarafan Medicinal Chemistry Knowledge Center Core Facility is parent organization of: Stanford Graduate School of Business Behavioral Lab Core Facility is parent organization of: Stanford Nano Shared Core Facility is parent organization of: Stanford System Prototyping Core Facility is parent organization of: Stanford Graduate School of Business Library is parent organization of: Stanford Vincent V.C. Woo Sandbox Laboratory Core Facility is parent organization of: Stanford Behavioral and Functional Neuroscience Laboratory Core Facility is parent organization of: Stanford Neuroscience Gene Vector and Virus Core Facility is parent organization of: Stanford Visualization Laboratory Core Facility is parent organization of: Stanford Geochronology Cluster Core Facility is parent organization of: Stanford Stable Isotope Biogeochemistry Laboratory Core Facility is parent organization of: Stanford Neuroscience Preclinical Imaging Laboratory Core Facility is parent organization of: Stanford Environmental Measurements Core Facility is parent organization of: Stanford Microchemical Analysis Core Facility is parent organization of: Stanford Neuroscience Microscopy Service Core Facility is parent organization of: Stanford Doerr School of Sustainability Sample Preparation Laboratory Core Facility is parent organization of: Stanford SIGMA Shared Facility is parent organization of: Stanford School of Medicine Translational Applications Service Center Core Facility is parent organization of: Stanford University School of Medicine Beckman Center for Molecular and Genetic Medicine Core Facility is parent organization of: Stanford University Chemistry Department NMR Facility is parent organization of: Stanford University School of Medicine Biobank Core Facility is parent organization of: Stanford University School of Medicine Center for Innovation in In vivo Imaging Core Facility is parent organization of: Stanford University School of Medicine Richard M. Lucas Center for Imaging Core Facility is parent organization of: Stanford University School of Medicine PET/MRI Metabolic Service Center Core Facility is parent organization of: Stanford University School of Medicine In Vitro Biosafety Level3 Service Center Core Facility is parent organization of: Stanford University School of Medicine Human Pathology Histology Services Laboratory Core Facility is parent organization of: Stanford University School of Medicine Genetics Bioinformatics Service Center Core Facility is parent organization of: Stanford Canary Center Preclinical Imaging Core Facility is parent organization of: Stanford University School of Medicine Transgenic, Knockout and Tumor model Center Core Facility is parent organization of: Stanford University School of Medicine Veterinary Service Center Core Facility is parent organization of: Stanford University School of Medicine Cancer Institute Tissue Procurement Shared Resource Core Facility is parent organization of: Stanford University School of Medicine Clinical and Translational Research Unit Core Facility is parent organization of: Stanford University School of Medicine Institute for Stem Cell Biology and Regenerative Medicine FACS Core Facility is parent organization of: Stanford University School of Medicine Animal Diagnostic Laboratory Core Facility is parent organization of: Stanford University Computer Science Department Computer Core Facility is parent organization of: Stanford University Instrumentation Shop Core Facility is parent organization of: Stanford University Cyclotron and Radiochemistry Core Facility is parent organization of: Stanford University Biomaterials and Advanced Drug Delivery Laboratory Core Facility is parent organization of: Stanford University Chemistry Department Optics Core Facility is parent organization of: Stanford University School of Medicine Computational Services and Bioinformatics Core Facility is parent organization of: Stanford University School of Medicine Laboratory for Cell and Gene Medicine Core Facility is parent organization of: Stanford University Research Computing is parent organization of: Stanford University Physics Machine Shop Core Facility is parent organization of: Stanford University High Performance Computing Center Core Facility is parent organization of: Stanford Center for High Throughput Quantitative Biology Core Facility is parent organization of: Stanford University Quantitative Sciences Unit Core Facility is parent organization of: Stanford University School of Medicine Cancer Institute Biostatistics Shared Resource Core Facility is parent organization of: Stanford Spectrum Biostatistics Epidemiology and Research Design Core Facility is parent organization of: STRUCTURE is parent organization of: Stanford University Additive Manufacturing and Printing Core Facility is parent organization of: Stanford University Koret Human Neurosciences Community Laboratory Core Facility is parent organization of: Stanford University Microfluidics Foundry Core Facility is parent organization of: Stanford University School of Medicine Protein and Nucleic Acid Core Facility is parent organization of: WebProtege is parent organization of: Stanford Cryo-Electron Microscopy Center Core Facility is parent organization of: Stanford Geomicrobiology Shared Laboratories Core Facility is parent organization of: Stanford University Cosmogenic Isotope Lab Core Facility is parent organization of: Stanford Research Computing Core Facility is parent organization of: Stanford University Mineralogy and Petrology Lab Core Facility is parent organization of: Stanford University MicroCT Core Facility is parent organization of: Stanford Ecosystems Shared Laboratory Core Facility is parent organization of: DADA2 is parent organization of: OpenMM |
nlx_44253, grid.168010.e, Wikidata:Q41506, Crossref funder ID:100005492, ISNI:419368956 | https://ror.org/00f54p054 | SCR_011538 | 2026-02-14 02:02:01 | 66 | |||||||||
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CHEBI Resource Report Resource Website 100+ mentions |
CHEBI (RRID:SCR_002088) | ChEBI | data or information resource, database | Collection of chemical compounds and other small molecular entities that incorporates an ontological classification of chemical compounds of biological relevance, whereby the relationships between molecular entities or classes of entities and their parents and/or children are specified. The molecular entities in question are either products of nature or synthetic products used to intervene in the processes of living organisms. | complex, conformer, ion, ion pair, isotope, molecular entity, molecule, radical, radical ion, small molecule, obo, gold standard, biochemistry, metabolomics, bio.tools |
uses: IUPAC uses: Nomenclature Committee of IUBMB is used by: Open PHACTS is used by: Ultimate Rough Aggregation of Metabolic Map is used by: RHEA is used by: GEROprotectors is used by: SwissLipids is listed by: OBO is listed by: BioPortal is listed by: NIF Data Federation is listed by: SourceForge is listed by: bio.tools is listed by: Debian is related to: Pathway Commons is related to: Integrated Manually Extracted Annotation has parent organization: European Bioinformatics Institute is parent organization of: Physico-Chemical Process is parent organization of: Physico-Chemical Methods and Properties works with: MiMeDB |
BBSRC BB/G022747/1 | PMID:19854951 PMID:19496059 PMID:17932057 |
Freely available | nif-0000-02655, biotools:chebi | http://bioportal.bioontology.org/ontologies/1007 http://www.obofoundry.org/cgi-bin/detail.cgi?id=chebi ftp://ftp.ebi.ac.uk/pub/databases/chebi/ontology/chebi.obo http://chebi.wiki.sourceforge.net/ https://bio.tools/chebi |
http://www.ebi.ac.uk/chebi/ | SCR_002088 | CHEBI, Chemical Entities of Biological Interest | 2026-02-14 02:06:07 | 126 | |||
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Teleost Taxonomy Ontology Resource Report Resource Website |
Teleost Taxonomy Ontology (RRID:SCR_001611) | TTO | data or information resource, ontology, controlled vocabulary | An ontology of taxonomic terms (names of taxonomic groups) used in the systematics of fish, including non-teleost groups such as Chondrichthys (sharks and rays), Sarcopterygii (lungfish and coelacanths), lampreys, and hagfish. It contains (as of August 2010) over 38,500 names, and over 44,000 taxonomic synonyms. A majority of the taxonomic names and synonyms were made available from the Catalog of Fishes. In July 2010 they added nearly 15,000 common names provided by Fishbase. Additional names and synonyms are added as a result of their curation activities. The ontology is being used to facilitate annotation of phenotypes, particularly for taxa that are not covered by NCBI because no submissions of molecular data have been made. Taxonomy ontologies can also be valuable in annotating legacy data, where authors make phenotype or ecological assertions (e.g., host-parasite associations) that refer to groups that are reorganized or no longer recognized. The taxonomy ontology serves as the source of taxa for their project's use for identifying evolutionary changes that match the phenotype of a zebrafish mutant. | taxonomy, term, name, group, fish, phenotype, obo |
is used by: Vertebrate Taxonomy Ontology is listed by: BioPortal is related to: Catalog of Fishes is related to: FishBase has parent organization: Phenoscape Knowledgebase |
Free, Freely available | nlx_153877 | https://www.nescent.org/phenoscape/ | SCR_001611 | 2026-02-17 09:59:43 | 0 | |||||||
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Mental Functioning Ontology Resource Report Resource Website 1+ mentions |
Mental Functioning Ontology (RRID:SCR_003245) | MF, MFO | data or information resource, ontology, controlled vocabulary | An ontology for mental functioning, including mental processes such as cognition and traits such as intelligence, and related diseases and disorders. It is developed in the context of the Ontology for General Medical Science and the Basic Formal Ontology. The project is being developed in collaboration between the University of Geneva, Switzerland, and the University at Buffalo, USA. The project is being developed with full involvement of all relevant communities, following best practices laid out by the OBO Foundry. Efforts are currently underway to align with related projects including the Behaviour Ontology, the Cognitive Atlas, the Cognitive Paradigm Ontology and the Neural Electro Magnetic Ontologies. | mental functioning, mental process, cognition, trait, psychology, neuroscience, owl |
is listed by: BioPortal is listed by: Google Code is listed by: OBO is related to: Information Artifact Ontology is related to: Emotion Ontology is related to: Emotion Ontology has parent organization: University at Buffalo; New York; USA |
Free, Freely available | nlx_157305 | http://purl.obolibrary.org/obo/mf.owl | SCR_003245 | mental-functioning-ontology | 2026-02-17 10:00:07 | 1 | ||||||
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Emotion Ontology Resource Report Resource Website |
Emotion Ontology (RRID:SCR_003272) | MFOEM | data or information resource, ontology, controlled vocabulary | An ontology of affective phenomena such as emotions, moods, appraisals and subjective feelings, designed to support interdisciplinary research by providing unified annotations. The ontology is a domain specialization of the broader Mental Functioning Ontology. | owl, affect, emotion, mood, appraisal, feeling, health, ontology |
is listed by: Google Code is listed by: OBO is listed by: BioPortal is related to: Mental Functioning Ontology is related to: Mental Functioning Ontology |
Free, Available for download, Freely available | nlx_157396 | https://github.com/jannahastings/emotion-ontology | SCR_003272 | 2026-02-17 10:00:15 | 0 | |||||||
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Experimental Conditions Ontology Resource Report Resource Website 1+ mentions |
Experimental Conditions Ontology (RRID:SCR_003306) | XCO | data or information resource, ontology, controlled vocabulary | An ontology designed to represent the conditions under which physiological and morphological measurements are made both in the clinic and in studies involving humans or model organisms. | obo, clinical, physiology, morphology, measurement |
is listed by: BioPortal is listed by: OBO has parent organization: Medical College of Wisconsin; Wisconsin; USA |
PMID:22654893 | Free, Available for download, Freely available | nlx_157401 | ftp://rgd.mcw.edu/pub/ontology/experimental_condition/experimental_condition.obo http://sourceforge.net/projects/phenoonto/ |
SCR_003306 | Experimental condition ontology | 2026-02-17 09:59:59 | 1 | |||||
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National Center for Biomedical Ontology Resource Report Resource Website 10+ mentions |
National Center for Biomedical Ontology (RRID:SCR_003304) | NCBO | organization portal, data or information resource, training resource, database, portal | Organization that provides biomedical researchers with online tools and a web portal enabling them to access, review, and integrate disparate ontological resources in all aspects of biomedical investigation and clinical practice. A major focus of the work involves the use of biomedical ontologies to aid in the management and analysis of data derived from complex experiments. | biomedical ontology, biomedical software tools |
is used by: DisGeNET is related to: Protege is related to: National Centers for Biomedical Computing has parent organization: National Centers for Biomedical Computing is parent organization of: BioPortal is parent organization of: PROTOTYPE - Suspected Overlap Among OBO Foundry Candidate Ontologies is parent organization of: Bio-Mixer |
NHGRI U54 HG004028 | PMID:21672956 PMID:23734708 |
Free, Freely available | nif-0000-31891 | SCR_003304 | 2026-02-17 10:00:14 | 27 | ||||||
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Vertebrate Trait Ontology Resource Report Resource Website |
Vertebrate Trait Ontology (RRID:SCR_003214) | VT | data or information resource, ontology, controlled vocabulary | A controlled vocabulary for the description of traits (measurable or observable characteristics) pertaining to the morphology, physiology, or development of vertebrate organisms. | trait, morphology, physiology, development, obo |
is listed by: BioPortal is related to: monarch-ontologies is related to: Rat Genome Database (RGD) is related to: Animal QTLdb is related to: Mouse Phenome Database (MPD) has parent organization: SourceForge |
PMID:23937709 | Free, Available for download, Freely available | nlx_156940 | SCR_003214 | VT Ontology | 2026-02-17 09:59:57 | 0 | ||||||
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Chemical Information Ontology Resource Report Resource Website 1+ mentions |
Chemical Information Ontology (RRID:SCR_003290) | CHEMINF | data or information resource, ontology, controlled vocabulary | An ontology that aims to establish a standard in representing chemical information including chemical structure and the ability to richly describe chemical properties, whether intrinsic or computed. It includes terms for the descriptors commonly used in cheminformatics software applications and the algorithms which generate them. | owl, biochemistry, chemistry, chemical structure, chemical property, structure, property, molecular |
is listed by: BioPortal is listed by: OBO is listed by: Google Code has parent organization: European Bioinformatics Institute |
PMID:21991315 | Free, Available for download, Freely available | nlx_157362 | http://purl.bioontology.org/ontology/CHEMINF http://semanticchemistry.googlecode.com/svn/trunk/ontology/cheminf.owl |
SCR_003290 | 2026-02-17 09:59:58 | 2 | ||||||
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Fly Taxonomy Resource Report Resource Website |
Fly Taxonomy (RRID:SCR_003317) | FB-SP, FBsp | data or information resource, controlled vocabulary | The taxonomy of the family Drosophilidae (largely after Baechli) and of other taxa referred to in FlyBase. | obo, taxonomy, organismal |
is listed by: BioPortal is listed by: OBO is listed by: SourceForge has parent organization: FlyBase |
Free, Available for download, Freely available | nlx_157407 | http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/taxonomy/fly_taxonomy.obo | SCR_003317 | FlyBase Taxa | 2026-02-17 10:00:14 | 0 | ||||||
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Plant Trait Ontology Resource Report Resource Website |
Plant Trait Ontology (RRID:SCR_003461) | PTO, TO | data or information resource, ontology, controlled vocabulary | A controlled vocabulary to describe phenotypic traits in plants. Each trait is a distinguishable feature, characteristic, quality or phenotypic feature of a developing or mature plant, or a plant part. | obo, phenotype, trait |
is listed by: BioPortal is listed by: OBO has parent organization: Gramene |
nlx_157556 | http://purl.bioontology.org/ontology/PTO http://palea.cgrb.oregonstate.edu/viewsvn/Poc/trunk/ontology/collaborators_ontology/gramene/traits/trait.obo?view=co http://www.gramene.org/plant_ontology/index.html#to http://www.gramene.org/plant_ontology/ |
SCR_003461 | 2026-02-17 10:00:19 | 0 | ||||||||
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Suggested Ontology for Pharmacogenomics Resource Report Resource Website |
Suggested Ontology for Pharmacogenomics (RRID:SCR_003497) | SOPHARM, SO-Pharm | data or information resource, ontology, controlled vocabulary | A domain ontology implemented in OWL-DL, which proposes a formal description of pharmacogenomic knowledge. It articulates different ontologies that represent complementary sub-domains of pharmacogenomics, i.e. related to genotype, phenotype, drugs, and clinical trials. SO-Pharm enables the representation of pharmacogenomic relationships between a drug, a genomic variation and a phenotype trait. In addition, it enables the representation of a patient and more largely a panel included in trials, and populations. SO-Pharm enables the representation of measured items on patients such as results from the observation of a phenotype trait or of genomic variations. SO-Pharm supports knowledge about pharmacogenomic hypothesis, case study, and investigations in pharmacogenomics. SO-Pharm is designed to facilitate data integration and knowledge discovery in pharmacogenomics. In addition it provides a consistent articulation of ontologies of pharmacogenomic sub-domains. | owl, pharmacogenomics, health, pathological, molecular, cellular, organismal, multi-organismal, drug, genomic variation, phenotype, trait, hypothesis, case study, investigation |
is listed by: BioPortal is listed by: OBO has parent organization: University of Lorraine; Lorraine; France |
nlx_157597 | http://purl.bioontology.org/ontology/SOPHARM SO-Pharm http://purl.oclc.org/NET/loria/sopharm/owl/sopharm |
SCR_003497 | 2026-02-17 10:00:20 | 0 |
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