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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Website Status Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
MONARCH Initiative
 
Resource Report
Resource Website
10+ mentions
MONARCH Initiative (RRID:SCR_000824) Monarch data or information resource, database Repository of information about model organisms, in vitro models, genes, pathways, gene expression, protein and genetic interactions, orthology, disease, phenotypes, publications, and authors, and ability to navigate multi-scale spatial and temporal phenotypes across in vivo and in vitro model systems in context of genetic and genomic data, using semantics and statistics. Discovery system provides basic and clinical science researchers, informaticists, and medical professionals with integrated interface and set of discovery tools to reveal genetic basis of disease, facilitate hypothesis generation, and identify novel candidate drug targets. Database that indexes authoritative information on experimental models of disease from MGI, RGD and ZFIN. disease, animal model, phenotype, model organism, in vitro model, gene, pathway, gene expression, protein interaction, genetic interaction, orthology, disease, publication, author, genetic, genomic, model system, genotype, drug, in vivo model uses: Animal QTLdb
uses: Ensembl Variation
uses: Human Phenotype Ontology
is used by: NIF Data Federation
is related to: Mouse Genome Informatics (MGI)
is related to: Rat Genome Database (RGD)
is related to: Zebrafish Information Network (ZFIN)
is related to: openSNP
is related to: Ancora
is related to: PhenoGen Informatics
is related to: Lifespan Observations Database
has parent organization: Oregon Health and Science University; Oregon; USA
is parent organization of: monarch-ontologies
NIH Office of the Director R24 OD011883 PMID:26269093 Free, Freely available r3d100011594, nlx_152525, SCR_001373, nlx_152748 https://orip.nih.gov/comparative-medicine/programs/genetic-biological-and-information-resources
https://doi.org/10.17616/R31M09
SCR_000824 MONARCH Integrated Disease Model, MONARCH Integrated Disease Models View, MONARCH Disease Models View, The MONARCH Initiative 2026-02-12 09:43:03 12
3DVC
 
Resource Report
Resource Website
3DVC (RRID:SCR_001377) 3DVC data or information resource, portal, community building portal THIS RESOURCE IS NO LONGER IN SERVICE, confirmed by curator 11/21/2018; Community of researchers attempting to build a comprehensive virtual cell model. The 3DVC will do for cell biology what the Large Hadron Collider (LHC) does for particle physics, but through a virtual rather than physical resource. It will bring together collaborators around a shared infrastructure to advance the field through efficient groundbreaking science and technology, the results of which will be broadly disseminated to an audience ranging from K12 to professionals. The 3DVC is committed to open science, yet strives for sustainability through new business models that leverages that open content. cell, model, biological structure, molecule lists: Albinism database
lists: ButterflyBase
lists: G2P Knowledge Centre
lists: Bio-Job.org
lists: RettBASE: IRSF MECP2 Variation Database
lists: Resource for Biocomputing Visualization and Informatics
lists: National Center for Integrative Biomedical Informatics
lists: Genome Network Platform
lists: NeuroExplorer
lists: Open Provenance Model
lists: BarleyBase
lists: BioModels
lists: Arabidopsis Reactome
lists: MEDLINE
lists: bioDBcore
lists: GermOnline
lists: GlycoMapsDB
lists: SNPHunter
lists: Allen Institute for Brain Science Sleep Study
lists: Coddle-Codons Optimized to Discover Deleterious LEsions
lists: MicroArray and Gene Expression Markup Language
lists: Fungal Genome Initiative
lists: EMDataResource.org
lists: University of Southern California LONI Software
lists: Ontology Development and Information Extraction
lists: Software Distribution Sets
lists: L-Measure
lists: UCSF Chimera
lists: Zebrafish Neurophenome Project Database
lists: Standards-based Infrastructure with Distributed Resources
lists: HapMap 3 and ENCODE 3
lists: NCBI BioProject
lists: SEQanswers Wiki
lists: NIF Data Federation
lists: SMD
lists: SoyBase
lists: modelcrop.org
lists: BiGG Database
lists: FSST - Functional Similarity Search Tool
lists: LHP LHDL
lists: Open Provenance Model Vocabulary
lists: DiseaseMeth
lists: neuroVIISAS
lists: Predictive Networks
lists: SitEx
lists: NRCAM
lists: DisGeNET
lists: MCMBB
lists: BARD
lists: Mouse Genome Informatics (MGI)
lists: European Nucleotide Archive (ENA)
lists: Comparative Toxicogenomics Database (CTD)
lists: PomBase
lists: Stanford University HIV Drug Resistance Database
lists: Database of Chemical Compounds and Reactions in Biological Pathways
lists: UCSD-Nature Signaling Gateway Molecule Pages
lists: IntAct
lists: The WWW Virtual Library: Model Organisms
lists: Helicobacter Pylori Database of Protein Interactomes
lists: Genes to Cognition: Neuroscience Research Programme
lists: neuroConstruct
lists: ModelDB
lists: 3DViewnix
lists: TMRPres2D
lists: Ikaros Project
lists: Dockground: Benchmarks, Docoys, Templates, and other knowledge resources for DOCKING
lists: Interagency Modeling and Analysis Group
lists: Annozilla (Annotea on Mozilla)
lists: Artificial Selected Proteins/Peptides Database
lists: Cancer Chromosomes
lists: CATMA - Complete Arabidopsis Transcriptome MicroArray
lists: Combinatorial Extension (CE)
lists: ChemDB: The UC Irvine ChemDB
lists: CluSTr
lists: CTDatabase
lists: DRC - Database of Ribosomal Crosslinks
lists: Gene Expression in Tooth Database
lists: GenoBase
lists: GPX-Macrophage
lists: Hetero-compound Information Centre- Uppsala
lists: IMG
lists: InSatDb
lists: InterDom
lists: IPD-HPA - Human Platelet Antigens
lists: Max Planck Unified Proteome Database
lists: Molecular Modelling DataBase
lists: MegaMotifbase
lists: Metalloprotein Site Database
lists: MitoDat - Mendelian Inheritance and the Mitochondrion
lists: Madison Metabolomics Consortium Database
lists: Olfactory Receptor DataBase
lists: SUPERFAMILY
lists: EyeBrowse
lists: Allen Institute Mouse Diversity Study
lists: BIRD - Bio Info R and D
lists: Bioinformatics Links Directory
lists: Electroencephalogram Database: Prediction of Epileptic Seizures
lists: Human Protein-Protein Interaction Mining Tool
lists: Interagency Modeling and Analysis Group and Multi-scale Modeling Consortium Wiki
lists: Systems Biology Workbench
lists: CellML
lists: MathML
lists: AraCyc
lists: Biochemical Pathways database
lists: CellML Model Repository
lists: Cytokine Family Database
lists: Bacterial Genomes
lists: U.S. Pig Genome Project
lists: ComBase: A Combined Database For Predictive Microbiology
lists: GeneWindow
lists: Comprehensive Systems-Biology Database
lists: Candidate Genes to Inherited Diseases
lists: MeGX
lists: Mammalian Phosphorylation Resource
lists: Efficient Mixed-Model Association
lists: Proteome Analyst PA-GOSUB
lists: PubCrawler
lists: Conical: The Computational Neuroscience Class Library
lists: Gene Expression Profile Analysis Suite
lists: Adaptive Poisson-Boltzmann Solver
lists: Aggrescan: The Hot Spot Finder
lists: Distributed Annotation System
lists: COILS: Prediction of Coiled Coil Regions in Proteins
lists: DNAWorks at Helix Systems
lists: Microarray DB
lists: Gene Relationships Across Implicated Loci
lists: SEQtools
lists: DeRisi Lab
lists: Protein Subcellular Location Image Database
lists: Open Information Integration
lists: Metagenomics Program at JGI
lists: BrainPeps
lists: EGAN: Exploratory Gene Association Networks
lists: CBioC
lists: OrChem
lists: Generic GO Term Finder
lists: G-node portal electrophysiology data sharing
lists: LegumeIP
lists: Roadmap Epigenomics Project
lists: TrakEM2
lists: ATID: Alternative Translational Initiation Database
lists: linked life data - a semantic data integration platform for the biomedical domain
lists: Crux tandem mass spectrometry analysis software
lists: CellProfiler Analyst
lists: Scirus - for scientific information only
lists: SRS
lists: KEGG
lists: Antibodypedia
lists: SWISS-MODEL Repository
lists: BTKbase
lists: ExTopoDB
lists: MINAS - Metal Ions in Nucleic AcidS
lists: Tripod
lists: NIH electronic Research Materials catalogue
lists: Alliance for Cellular Signaling Molecule Pages Database
lists: Death Domain database
lists: Cube-DB
lists: OntoQuest
lists: EASE: the Expression Analysis Systematic Explorer
lists: Greglist
lists: Chloroplast Genome Database
lists: Montage RTS2000
lists: BGI-RISe - Beijing Genomics Institute Rice Information System
lists: ApiDB CryptoDB
lists: Chilibot: Gene and Protein relationships from MEDLINE
lists: AutDB
lists: DAVID
lists: Dataverse Network Project
lists: Binding MOAD
lists: Biological Magnetic Resonance Data Bank (BMRB)
lists: RNAhybrid
lists: RegulonDB
lists: Artemis: Genome Browser and Annotation Tool
lists: Genomedata
lists: CATSS - Child and Adolescent Twin Study in Sweden
lists: Viking Viewer for Connectomics
lists: SpliceDB
lists: Galaxy
lists: SPM
lists: Hyper Cell Line Database
lists: MeGX
has parent organization: University of California at San Diego; California; USA
NSF 1216893 THIS RESOURCE IS NO LONGER IN SERVICE nlx_152536 http://www.3dvcell.org/conference-toward-3d-virtual-cell SCR_001377 3D Virtual Cell 2026-02-12 09:43:08 0
Resource Identification Portal
 
Resource Report
Resource Website
10+ mentions
Resource Identification Portal (RRID:SCR_004098) RII Portal data or information resource, portal Portal providing identifiers for Antibodies, Model Organisms, and Tools (software, databases, services) created in support of the Resource Identification Initiative, which aims to promote research resource identification, discovery, and reuse. The portal offers a central location for obtaining and exploring Research Resource Identifiers (RRIDs) - persistent and unique identifiers for referencing a research resource. A critical goal of the RII is the widespread adoption of RRIDs to cite resources in the biomedical literature and other places that reference their generation or use. RRIDs use established community identifiers where they exist, and are cross-referenced in their system where more than one identifier exists for a single resource. antibody, organism, service resource, software resource, database, resource, identifier, citation, biomedical, publication, research resource identifier, rrid, ASWG uses: Antibody Registry
uses: SciCrunch Registry
uses: Mouse Genome Informatics (MGI)
uses: Zebrafish Information Network (ZFIN)
uses: Rat Genome Database (RGD)
uses: WormBase
uses: FlyBase
recommends: SciCrunch Registry
recommends: Mouse Genome Informatics (MGI)
recommends: Zebrafish Information Network (ZFIN)
recommends: Rat Genome Database (RGD)
is recommended by: Neuroscience Information Framework
is recommended by: SciCrunch Registry
is related to: NIF Data Federation
has parent organization: SciCrunch
NIGMS R24 GM144308 The community can contribute to this resource nlx_158572 SCR_004098 Resource Identification Initiative Portal 2026-02-12 09:43:44 19
ScienceNOW
 
Resource Report
Resource Website
1+ mentions
ScienceNOW (RRID:SCR_004649) ScienceNOW data or information resource, narrative resource ScienceNOW is science headline news from all realms of science, including biology, genetics, medicine, stem cells, evolution, animals, climate change, the environment, physics, astronomy, and science policy. This free content is produced by Science Magazine''s award-winning team of journalists. science, research, news, biology, genetics, medicine, stem cell, evolution, animal, climate change, environment, physics, astronomy, science policy is used by: NIF Data Federation
is used by: Integrated Blogs
nlx_144226 SCR_004649 ScienceNOW - UP TO THE MINUTE NEWS FROM SCIENCE 2026-02-12 09:43:56 1
The Guardian: Science Videos
 
Resource Report
Resource Website
The Guardian: Science Videos (RRID:SCR_006597) The Guardian: Science Videos data or information resource, video resource Articles published by guardian.co.uk Science about: Science + Video science is used by: NIF Data Federation
is used by: Integrated Videos
nlx_144242 SCR_006597 The Guardian - Science videos, Guardian: Science videos 2026-02-12 09:44:22 0
Access-ScienceJobs.co.uk
 
Resource Report
Resource Website
Access-ScienceJobs.co.uk (RRID:SCR_005157) Access-ScienceJobs.co.uk data or information resource, narrative resource, job resource A leading online job board for scientists, Access-ScienceJobs.co.uk was initially launched in July 2005 from an existing scientific recruitment platform with the sole aim to provide employers a more cost-effective recruitment advertising solution, and for jobseekers a one-stop portal for finding their ideal scientific position. For Jobseekers We work with some of the UK''s leading recruitment agencies and direct employers to bring you an extensive selection of scientific jobs across all related industry sectors. Start your job search here or find a direct employer or agency in our companies a-z directory. Don''t miss our articles section, with useful careers, reviews and news articles written by respected recruitment and cv specialists. * Apply Online - fast, securely & professionally * Save your Job Alerts and manage them easily within your control panel * Create an effective CV Profile and let recruiters find you For Recruiters Looking to fill a job vacancy? We attract a wide range of Scientists within the UK through various forms of job distributions, networks and media coverage. * Post your Science related Jobs to our network of qualified Scientists * Edit, Repost & Expire your Job postings, anytime * Find professional Science Candidates when you CV Search online * Post your Career & News Articles to enhance your Employer brand * List your Profile for FREE in our Companies A-Z Directory job seeker, employer, job posting, career, science, database, data storage repository is used by: NIF Data Federation
is related to: Integrated Jobs
nlx_144183 SCR_005157 2026-02-12 09:44:06 0
Data.gov Science and Research Data Catalog
 
Resource Report
Resource Website
Data.gov Science and Research Data Catalog (RRID:SCR_003927) Science & Research Data Catalog data or information resource, database, catalog A catalog of high-value public science and research data sets from across the Federal Government. data set, science, research is used by: NIF Data Federation
is used by: Integrated Datasets
has parent organization: Data.gov
Public domain, Acknowledgement requested nlx_158294 http://science.data.gov/ SCR_003927 Science & Research - Data Catalog, Science and Research - Data Catalog, Science.Data.gov 2026-02-12 09:43:43 0
Integrated Videos
 
Resource Report
Resource Website
Integrated Videos (RRID:SCR_003613) data or information resource, database, video resource A virtual database indexing video and other multimedia content from: NIH VideoCasting and Podcasting, JoVE: Journal of Visualized Experiments, The Guardian: Science Videos, Biointeractive, goCognitive, UCSF Laboratory for Visual Neuroscience, and Clarity resources. movie, video, database, integrated uses: NIH VideoCasting
uses: Journal of Visualized Experiments
uses: The Guardian: Science Videos
uses: Biointeractive
uses: goCognitive
uses: UCSF Laboratory for Visual Neuroscience
uses: Clarity resources
is used by: NIF Data Federation
is used by: Aging Portal
has parent organization: Integrated
Data are licensed by their respective owners. Use and distribution is subject to the Terms of Use by the original resource as well as the, Creative Commons Attribution License nlx_13182 https://legacy.neuinfo.org/mynif/search.php?q=*&t=indexable&list=cover&nif=nlx_154697-11 http://neuinfo.org/nif/nifgwt.html?query=nlx_13182, https://www.neuinfo.org/mynif/search.php?q=*&t=indexable&nif=nlx_13182-1, https://neuinfo.org/mynif/search.php?q=*&t=indexable&list=cover&nif=nlx_154697-11 SCR_003613 NIF Integrated Videos View, NIF Integrated Videos, Integrated Video, NIF Integrated Video, NIF Video, Integrated Video View, NIF Integrated Video View, Integrated Videos View, NIF Videos 2026-02-12 09:43:39 0
Science Talk
 
Resource Report
Resource Website
Science Talk (RRID:SCR_000545) data or information resource, narrative resource A weekly podcast hosted by Steve Mirsky on topics relating to developments in science and technology through interviews with leading scientists and journalists. This podcast is affiliated with Scientific American. podcast, science, technology, interview, narrative is used by: NIF Data Federation
is related to: Integrated Podcasts
Public, Free nlx_94534 http://www.scientificamerican.com/podcast/podcasts.cfm?type=science-talk SCR_000545 2026-02-12 09:43:00 0
60-Second Mind
 
Resource Report
Resource Website
60-Second Mind (RRID:SCR_000925) data or information resource, narrative resource A podcast of neuroscience news in minute-intervals from the Scientific American. New episodes become available every Saturday. neuroscience, scientific american, radio, podcast is used by: NIF Data Federation
is related to: Integrated Podcasts
THIS RESOURCE IS NO LONGER IN SERVICE nlx_52233 SCR_000925 2026-02-12 09:43:04 0
NIDDK Information Network (dkNET)
 
Resource Report
Resource Website
10+ mentions
NIDDK Information Network (dkNET) (RRID:SCR_001606) dkNET data or information resource, portal, database, community building portal The NIDDK Information Network (dkNET) is a community-based network to serve needs of basic and clinical investigators that includes large pools of data and research resources relevant to mission of National Institute of Diabetes and Digestive and Kidney Disease. dknet, data resource, diabetes, kidney, liver, disease, urology, hematology, digestive, nutrition, endocrine, obesity, metabolic uses: NIDDK Central Repository
uses: Addgene
uses: NIF Data Federation
uses: Antibody Registry
uses: Nuclear Receptor Signaling Atlas
uses: GenitoUrinary Development Molecular Anatomy Project
uses: Diabetic Complications Consortium
uses: National Mouse Metabolic Phenotyping Centers
uses: T1DBase
uses: Beta Cell Biology Consortium
uses: Grants.gov
uses: dkNET Community Pilot Funding Opportunities
uses: Integrated Grants
uses: ClinicalTrials.gov
uses: Integrated Animals
uses: Intestinal Stem Cell Consortium
recommends: Biological General Repository for Interaction Datasets (BioGRID)
recommends: Cell Image Library (CIL)
recommends: Accelerating Medicines Partnership Type 2 Diabetes Knowledge Portal (AMP-T2D)
recommends: NIDDK Central Repository
recommends: Network Data Exchange (NDEx)
recommends: PeptideAtlas
recommends: International Mouse Phenotyping Consortium (IMPC)
recommends: FlyBase
recommends: Metabolomics Workbench
recommends: Zebrafish Information Network (ZFIN)
recommends: Mouse Genome Informatics (MGI)
recommends: Database of Interacting Proteins (DIP)
recommends: UniProt
recommends: PhysioNet
recommends: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB)
recommends: ClinicalTrials.gov
recommends: dbVar
recommends: Analysis, Visualization, and Informatics Lab-space (AnVIL)
recommends: WormBase
recommends: dbSNP
recommends: GenBank
recommends: DNA DataBank of Japan (DDBJ)
recommends: Database of Genomic Variants Archive (DGVa)
recommends: NCBI Sequence Read Archive (SRA)
recommends: MGnify
recommends: European Variation Archive (EVA)
recommends: European Nucleotide Archive (ENA)
recommends: Gene Expression Omnibus (GEO)
recommends: NCBI Assembly Archive Viewer
recommends: Protein Circular Dichroism Data Bank (PCDDB)
recommends: miRBase
recommends: Trace Archive
recommends: UniProtKB
recommends: Coherent X-Ray Imaging Data Bank (CXIDB)
recommends: Electron Microscopy Data Bank at PDBe (MSD-EBI)
recommends: Worldwide Protein Data Bank (wwPDB)
recommends: Biological Magnetic Resonance Data Bank (BMRB)
recommends: Crystallography Open Database (COD)
recommends: PDBj - Protein Data Bank Japan
recommends: Inorganic Crystal Structure Database (ICSD)
recommends: Structural Biology Grid
recommends: NCBI database of Genotypes and Phenotypes (dbGap)
recommends: ArrayExpress
recommends: EMDataResource.org
recommends: Cambridge Crystallographic Data Centre (CCDC)
recommends: PDBe - Protein Data Bank in Europe
recommends: Japanese Genotype-phenotype Archive (JGA)
recommends: PubChem BioAssay
recommends: European Genome phenome Archive
recommends: GenomeRNAi
recommends: ProteomeXchange
recommends: MetaboLights
recommends: IntAct
recommends: FLOWRepository
recommends: Proteomics Identifications (PRIDE)
recommends: Global Proteome Machine Database (GPM DB)
recommends: Kinetic Models of Biological Systems (KiMoSys)
recommends: ChEMBL
recommends: Cancer Imaging Archive (TCIA)
recommends: Image Data Resource (IDR)
recommends: The Immunology Database and Analysis Portal (ImmPort)
recommends: PubChem Substance
recommends: NeuroMorpho.Org
recommends: Cancer Nanotechnology Laboratory (caNanoLab)
recommends: SICAS Medical Image Repository
recommends: Mass spectrometry Interactive Virtual Environment (MassIVE)
recommends: Dryad Digital Repository
recommends: ZENODO
recommends: NIH Figshare Archive
recommends: STRENDA
recommends: OpenNeuro
recommends: Influenza Research Database (IRD)
recommends: 1000 Functional Connectomes Project
recommends: Mendeley Data
recommends: Open Science Framework
recommends: Dataverse Network Project
recommends: NIMH Data Archive
recommends: FigShare
recommends: National Addiction and HIV Data Archive Program (NAHDAP)
recommends: SPARC Portal
recommends: Vivli
is recommended by: National Library of Medicine
lists: Diabetic Complications Consortium
lists: Nephromine
lists: LIPID Metabolites And Pathways Strategy
lists: METLIN
lists: NIDDK Inflammatory Bowel Disease Genetics Consortium
lists: Body Mass Index Calculator
lists: Symptom Score for Benign Prostatic Hyperplasia
lists: Genetics of Kidneys in Diabetes
lists: Type 1 Diabetes - Rapid Access to Intervention Development
lists: TEDDY
lists: Trans-Institute Angiogenesis Research Program
lists: Consortium for Radiologic Imaging Studies of Polycystic Kidney Disease
lists: Current Research Information System
lists: Healthy People
lists: Acute Liver Failure Study Group
lists: Collaborative Islet Transplant Registry
lists: Diabetes Prevention Type 1
lists: Epidemiology of Diabetes Interventions and Complications
lists: NIH Division of Nutrition Research Coordination
lists: Human Nutrition Research Information Management
lists: Type 1 Diabetes Resource
lists: National Diabetes Education Program
lists: Pediatric Acute Liver Failure Study
lists: Globin Gene Server
lists: NIH Chronic Prostatitis Symptom Index
lists: Sequencing of Idd regions in the NOD mouse genome
lists: Look AHEAD
lists: Teen-Longitudinal Assessment of Bariatric Surgery
lists: Adult to Adult Living Donor Liver Transplantation Cohort Study
lists: Behavior Enhances Drug Reduction of Incontinence
lists: BARI 2D
lists: Childhood Liver Disease Research and Education Network
lists: Standardization of C-peptide measurements
lists: CKID A Prospective Cohort Study of Kidney Disease in Children
lists: Diabetes Prevention Program
lists: Diabetes Prevention Program Outcomes Study
lists: Irritable Bowel Syndrome Outcome Study
lists: Folic Acid for Vascular Outcome Reduction in Transplantation
lists: Type 1 Diabetes TrialNet
lists: Diabetes Research in Children Network
lists: Diabetic Retinopathy Clinical Research Network
lists: Clinical Islet Transplantation Study
lists: Nonalcoholic Steatohepatitis Clinical Research Network
lists: Drug-Induced Liver Injury Network
lists: Family Investigation of Nephropathy of Diabetes
lists: Frequent Hemodialysis Network Daily Trial
lists: HEALTHY study
lists: SISTEr
lists: Urinary Incontinence Treatment Network
lists: TINSAL-T2D
lists: TOMUS
lists: Type 1 Diabetes Genetics Consortium
lists: Center for Inherited Disease Research
lists: Action to Control Cardiovascular Disease Risk in Diabetes Follow-up Study (ACCORDION)
lists: Predicting Response to Standardized Pediatric Colitis Therapy (PROTECT)
lists: Lifestyle Interventions for Expectant Moms (LIFE-Moms)
lists: Hyperglycemia and Pregnancy Outcomes Follow-Up Study Consortium (HAPO-FUS)
lists: Nephrotic Syndrome Study Network (NEPTUNE)
lists: CKD Biomarkers Consortium
lists: Porphyria Consortium
lists: Vitamin D to Prevent Type 2 Diabetes (D2d)
lists: Glycemic Reduction Approaches in Diabetes: A Comparative Effectiveness Study (GRADE)
lists: Symptoms of Lower Urinary Tract Dysfunction Research Network (LURN)
lists: Clinical Islet Transplantation Consortium (CITC)
lists: Restoring Insulin Secretion Consortium (RISE)
lists: Assessment Serial Evaluation and Subsequent Sequelae in Acute Kidney Injury (ASSESS-AKI)
lists: Integrated Islet Distribution Program (IIDP)
lists: Human Islet Research Network (HIRN)
lists: Rare Kidney Stone Consortium (RKSC)
lists: Evaluating Predictors and Interventions in Sphincter of Oddi Dysfunction
lists: Efficacy and Mechanisms of Glutamine Dipeptide in the Surgical Intensive Care Unit
lists: Intestinal Stem Cell Consortium
lists: RiVuR
lists: Gastroparesis Clinical Research Consortium
lists: Urologic Diseases in America
lists: United States Renal Data System
lists: HALT PKD
lists: Chronic Renal Insufficiency Cohort Study
lists: Viral Resistance to Antiviral Therapy of Chronic Hepatitis C
lists: Peginterferon and Ribavirin for Pediatric Patients with Chronic Hepatitis C
lists: HALT-C Trial
lists: TRIGR
lists: Treatment Options for type 2 Diabetes in Adolescents and Youth
lists: Study of Nutrition in Acute Pancreatitis
lists: SEARCH for Diabetes in Youth
lists: Organ Procurement and Transplantation Network
lists: Nuclear Receptor Signaling Atlas
lists: NIH Common Fund
lists: Mutant Mouse Resource and Research Center
lists: GenitoUrinary Development Molecular Anatomy Project
lists: National Mouse Metabolic Phenotyping Centers
lists: IPD-MHC- Major Histocompatibility Complex
lists: High-dose Ursodiol Therapy of Primary Sclerosing Cholangitis
lists: Hepatitis B Research Network
lists: Functional Dyspepsia Treatment Trial
lists: Cooperative Study Group for Autoimmune Disease Prevention
lists: Clinical Outcomes Research Initiative
lists: BISC
lists: Beta Cell Biology Consortium
lists: Autoimmunity Centers of Excellence
lists: HemBase
lists: Longitudinal Assessment of Bariatric Surgery
lists: Minnesota Liver Tissue Cell Distribution System
lists: Knockout Mouse Project
lists: Immune Tolerance Network (ITN)
lists: Accelerating Medicines Partnership Type 2 Diabetes Knowledge Portal (AMP-T2D)
lists: ReBuilding a Kidney
lists: GOA
lists: NURSA Transcriptomine
lists: STRING
lists: Nuclear Receptor Cistrome
lists: EuReGene
lists: Embryo Images Normal and Abnormal Mammalian Development
lists: Stem Cell Genome Anatomy Projects
lists: Eurexpress
lists: Gene Expression Database
lists: ToppGene Suite
lists: GATACA GUDMAP Gene Explorer
lists: Knockout Mouse Project Repository
lists: Cornell Heart Lung Blood Resource for Optogenetic Mouse Signaling (CHROMus)
lists: International Mouse Phenotyping Consortium (IMPC)
lists: Juvenile Diabetes Research Foundation
lists: NIDDK Central Repository
lists: Biospecimens/Biorepositories: Rare Disease-HUB (RD-HUB)
lists: Biologic Specimen and Data Repository Information Coordinating Center (BioLINCC)
lists: T1DBase
lists: NCI Specimen Resource Locator
lists: NCBI database of Genotypes and Phenotypes (dbGap)
lists: caHUB
lists: T1D Exchange
lists: NCBI
lists: LANDMark BioBanks
lists: Diabetes Research Centers
lists: Network for Pancreatic Organ Donors with Diabetes
lists: Nutrition and Obesity Research Centers
lists: Baltimore Polycystic Kidney Disease (PKD) Research and Clinical Core Center Antibody Validation and Vector Core
lists: Baltimore Polycystic Kidney Disease (PKD) Research and Clinical Core Center Cell Culture and Engineering
lists: Baltimore Polycystic Kidney Disease (PKD) Research and Clinical Core Center Clinical and Translational Core Resource
lists: Baltimore Polycystic Kidney Disease (PKD) Research and Clinical Core Center Mouse Models and Biobank
lists: Baltimore Polycystic Kidney Disease (PKD) Research and Clinical Core Center
lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Bioinformatics Resource
lists: Boston Area Diabetes Endocrinology Research Center Cell Biology and Morphology Core Facility
lists: Boston Area Diabetes Endocrinology Research Center Metabolic Physiology and Energy Balance Core Facility
lists: Boston Area Diabetes Endocrinology Research Center Molecular Biology
lists: Boston Area Diabetes Endocrinology Research Center Pancreatic Islet
lists: Boston Area Diabetes Endocrinology Research Center
lists: Boston Area Diabetes Endocrinology Research Center Transgenic
lists: Boston Children's Hospital Center of Excellence in Molecular Hematology Mouse Embryonic Stem(ES) Cell and Gene Targeting Core
lists: Boston Children's Hospital Center of Excellence in Molecular Hematology
lists: Boston Children's Hospital Center of Excellence in Molecular Hematology Stem Cell Engineering and Analysis Core
lists: Boston Children's Hospital Center of Excellence in Molecular Hematology Zebrafish Core
lists: Boston Nutrition and Obesity Research Centers Adipose Biology and Nutrient Metabolism Core
lists: Boston Nutrition and Obesity Research Centers Administrative Core
lists: Boston Nutrition and Obesity Research Centers Epidemiology and Genetics Core
lists: Boston Nutrition and Obesity Research Centers Functional Genomics and Bioinformatics Core
lists: Boston Nutrition and Obesity Research Centers
lists: Boston Nutrition and Obesity Research Centers Transgenic Core
lists: Center for American Indian and Alaska Native Diabetes Translational Research Administrative Core
lists: Center for American Indian and Alaska Native Diabetes Translational Research National Resource
lists: Center for American Indian and Alaska Native Diabetes Translational Research Resource
lists: Center for American Indian and Alaska Native Diabetes Translational Research
lists: Center for Iron and Heme Disorders at the University of Utah Administrative Core
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lists: Center for Iron and Heme Disorders at the University of Utah Metabolomics Core
lists: Center for Iron and Heme Disorders at the University of Utah Mutation Generation and Detection Core
lists: Center for Iron and Heme Disorders at the University of Utah
lists: Center for the Study of Inflammatory Bowel Disease Clinical Core
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lists: Center for the Study of Inflammatory Bowel Disease Genetics Genomics and Molecular Biology Core
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lists: Cleveland Digestive Diseases Research Core Center
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lists: Columbia Diabetes Research Center Flow Cytometry and Cell Sorting Core Facility
lists: Columbia Diabetes Research Center Mouse Metabolic Function and Phenotyping Core Facility
lists: Columbia Diabetes Research Center
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lists: Columbia University George M. O'Brien Urology Center
lists: CURE - Digestive Diseases Research Center Administrative Core
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lists: CURE - Digestive Diseases Research Center Human Studies Core
lists: CURE - Digestive Diseases Research Center Molecular Biology and Peptidomics Core
lists: CURE - Digestive Diseases Research Center Morphology and Imaging Core
lists: CURE - Digestive Diseases Research Center
lists: Cystic Fibrosis and Pulmonary Diseases Research and Treatment Center Clinical Translational Core
lists: Cystic Fibrosis and Pulmonary Diseases Research and Treatment Center Histology Core
lists: Cystic Fibrosis and Pulmonary Diseases Research and Treatment Center Michael Hooker Microscopy Core Facility
lists: Cystic Fibrosis and Pulmonary Diseases Research and Treatment Center Molecular Biology Core
lists: Cystic Fibrosis and Pulmonary Diseases Research and Treatment Center Mouse Models Core
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lists: Cystic Fibrosis and Pulmonary Diseases Research and Treatment Center
lists: Cystic Fibrosis and Pulmonary Diseases Research and Treatment Center Tissue Procurement and Cell Culture Core
lists: Cystic Fibrosis Center - University of California San Francisco
lists: Cystic Fibrosis Center University of Pittsburgh
lists: Cystic Fibrosis Center - University of Washington Administrative and Enrichment Core
lists: Cystic Fibrosis Center - University of Washington Clinical Core
lists: University of Washington Genomics Core Cystic Fibrosis Research Translation Center and Research Development Program
lists: Cystic Fibrosis Center - University of Washington Host Response Core
lists: Cystic Fibrosis Center - University of Washington Microbiology Core
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lists: Cystic Fibrosis Research and Translation Centers
lists: Digestive Disease Centers
lists: Duke O'Brien Center for Kidney Research Animal Models Core
lists: Duke O'Brien Center for Kidney Research Clinical and Translational Core
lists: Duke O'Brien Center for Kidney Research Renal Genomics Core
lists: Duke O'Brien Center for Kidney Research
lists: Einstein-Mount Sinai Diabetes Research Center Animal Physiology Core Facility
lists: Einstein-Mount Sinai Diabetes Research Center Biomarker Analytic Research Core Facility
lists: Einstein-Mount Sinai Diabetes Research Center Human Islet and Adenovirus Core Facility
lists: Einstein-Mount Sinai Diabetes Research Center
lists: Einstein-Mount Sinai Diabetes Research Center Stable Isotope and Metabolomics Core Facility
lists: Einstein-Mount Sinai Diabetes Research Center Translational Research Core Facility
lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Antibody Technology
lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Arnold Library
lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Comparative Medicine
lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Electron Microscopy
lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Experimental Histopathology Shared Resource
lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Flow Cytometry
lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Genomics Shared Resource
lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Glassware Services
lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Proteomics Resource
lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Research Freezers and Sample Storage Resource
lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology
lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Scientific Imaging
lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Specimen Processing/Research Cell Bank
lists: George M. O'Brien Kidney Center at Yale Human Genetics and Clinical Research Core
lists: George M. O'Brien Kidney Center at Yale Mouse Genetics and Cell Line Core
lists: George M. O'Brien Kidney Center at Yale Renal Physiology Core
lists: George M. O'Brien Kidney Center at Yale
lists: George M. O'Brien Kidney Research Core Center - UT Southwestern Medical Center Animal Models Core
lists: George M. O'Brien Kidney Research Core Center - UT Southwestern Medical Center Cell Biology and Imaging Core
lists: George M. O'Brien Kidney Research Core Center - UT Southwestern Medical Center Clinical and Translational Core
lists: George M. O'Brien Kidney Research Core Center - UT Southwestern Medical Center Physiology Core
lists: George M. O'Brien Kidney Research Core Center - UT Southwestern Medical Center
lists: Georgia Center for Diabetes Translation Research Design and Evaluation Core Facility
lists: Georgia Center for Diabetes Translation Research Disparities Core
lists: Georgia Center for Diabetes Translation Research Engagement and Behavior Change Core
lists: Georgia Center for Diabetes Translation Research
lists: Gregory Fleming James Cystic Fibrosis Research Center Assay Core
lists: Gregory Fleming James Cystic Fibrosis Research Center Cell Model and Evaluation Core
lists: Gregory Fleming James Cystic Fibrosis Research Center Cystic Fibrosis Animal Models Core
lists: Gregory Fleming James Cystic Fibrosis Research Center Cystic Fibrosis Clinical and Translational Core
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lists: Johns Hopkins University - University of Maryland Diabetes Research Center Administrative Core
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lists: MMPC-University of Cincinnati Medical Center Lipid Lipoprotein and Glucose Metabolism Core
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lists: MMPC-University of Michigan Medical School
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lists: MMPC-Vanderbilt University School of Medicine Metabolic Regulation Core
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lists: O'Brien Center for Benign Urologic Research at University of Wisconsin-Madision and University of Massachusetts-Boston Rodent Urinary Function Testing Core
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lists: O'Brien Kidney Centers
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lists: Pediatric Centers of Excellence in Nephrology at Duke Division of Pediatric Nephrology
lists: Pediatric Centers of Excellence in Nephrology at University of Virginia
lists: Penn Diabetes Research Center Functional Genomics Core
lists: Penn Diabetes Research Center Metabolomics Core
lists: Penn Diabetes Research Center Mouse Phenotyping Physiology and Metabolism Core
lists: University of Pennsylvania School of Medicine Penn Diabetes Research Center Pancreatic Islet Cell Biology Core Facility
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lists: Penn Diabetes Research Center Transgenic and Chimeric Mouse Core Facility
lists: Louisiana State University Pennington Biomedical Nutrition Obesity Research Center Core Facility
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lists: Pittsburgh Center for Kidney Research Biostatistical Analysis Services
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lists: Translational Polycystic Kidney Disease (PKD) Center at Mayo Clinic Rochester Molecular Genetics and Biomarker Core
lists: Translational Polycystic Kidney Disease (PKD) Center at Mayo Clinic Rochester
lists: UAB Hepatorenal Fibrocystic Diseases Core Center Cellular Physiology Resource
lists: UAB Hepatorenal Fibrocystic Diseases Core Center Engineered Models Resource
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lists: University of Alabama at Birmingham-University of California San Diego O'Brien Center for Acute Kidney Injury Research Biostatistical Core
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lists: University of Alabama at Birmingham Nutrition and Obesity Research Center Metabolism Core
lists: University of Alabama at Birmingham Nutrition and Obesity Research Center Physical Activity Core
lists: University of Alabama at Birmingham Nutrition and Obesity Research Center
lists: University of California San Diego - University of California Los Angeles Diabetes Research Center Genomics and Epigenetics Core Facility
lists: University of California San Diego - University of California Los Angeles Diabetes Research Center Human Genetics Core Facility
lists: University of California San Diego - University of California Los Angeles Diabetes Research Center Metabolic and Molecular Physiology Core Facility
lists: University of California San Diego - University of California Los Angeles Diabetes Research Center
lists: University of California San Diego - University of California Los Angeles Diabetes Research Center Targeted Pathway Analysis Core Facility
lists: University of California San Diego - University of California Los Angeles Diabetes Research Center Transgenic and Knockout Mouse Core Facility
lists: University of California San Francisco Parnassus Flow Cytometry Core Facility
lists: University of California San Francisco Diabetes Research Center Lentiviral RNAi Core Facility
lists: University of California San Francisco Diabetes Research Center Microscopy Core Facility
lists: University of California San Francisco Diabetes Research Center Mouse Genetics Core Facility
lists: University of California San Francisco Diabetes Research Center Mouse Metabolism Core
lists: University of California San Francisco Diabetes Research Center
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lists: University of California San Francisco Nutrition and Obesity Research Center Mouse Metabolism and Imaging Core
lists: University of California San Francisco Nutrition and Obesity Research Center
lists: University of Chicago Diabetes Research and Training Center Administrative Core
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lists: Washington University Center for Diabetes Translation Research Policy and Systems Science Analysis in Diabetes Research Core
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lists: Washington University Center for Diabetes Translation Research
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lists: Washington University School of Medicine Diabetes Research Center Translational Diagnostics Core
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is related to: Network of Minority Health Research Investigators
is related to: National Endocrine and Metabolic Diseases Information Service
is related to: Kidney and Urinary Pathway Ontology
is related to: National Diabetes Information Clearinghouse
is related to: Digestive Diseases Statistics for the United States
is related to: Diabetes in America
is related to: National Digestive Diseases Information Clearinghouse
is related to: Diabetes Control and Complications Trial
is related to: National Hematologic Diseases Information Service
is related to: National Kidney and Urologic Diseases Information Clearinghouse
is related to: Nonhuman Primate Transplantation Tolerance Cooperative Study Group
is related to: Type 1 Diabetes Preclinical Testing Program
is related to: Diabetes Autoantibody Standardization Program
is related to: AASK Clinical Trial and Cohort Study
is related to: Maryland Genetics of Interstitial Cystitis
is related to: Frequent Hemodialysis Network Nocturnal Trial
is related to: Mammalian Gene Collection
is related to: Zebrafish Gene Collection
is related to: Boston Area Community Health Survey
is related to: Minimally Invasive Surgical Therapies Treatment Consortium for Benign Prostatic Hyperplasia
is related to: Focal Segmental Glomerulosclerosis in Children and Young Adults Interventional Study
is related to: Complementary and Alternative Medicine for Urological Symptoms
is related to: Mouse Mutagenesis Center for Developmental Defects
is related to: CARDS Database
is related to: ACCORD
is related to: Program to Reduce Incontinence by Diet and Exercise
is related to: Renal Disease Portal
is related to: Renin Angiotensin System Study
is related to: NIH Data Sharing Repositories
is related to: Kidney Development Database
is related to: GenePaint Interactive Anatomy Atlas
is related to: EMAGE Gene Expression Database
is related to: Gene Expression Omnibus
is related to: MGnify
is related to: FAIR Data Informatics Laboratory
is related to: Type 1 Diabetes Knowledge Portal
is related to: Polycystic Kidney Disease Research Resource Consortium
has parent organization: SciCrunch
has parent organization: University of California at San Diego; California; USA
Digestive disease, Kidney disease, Diabetes, Metabolic disease, Endocrine disease, Obesity, Urologic disease, Type 1 diabetes, Type 2 diabetes NIDDK U24 DK097771 PMID:26393351 Free, Freely available nlx_153866, r3d100012845 http://scicrunch.org/dknet
https://doi.org/10.17616/R31NJMEL
SCR_001606 National Institute of Diabetes and Digestive and Kidney Disease Information Network, NIDDK Information Network, DKnet, NIDDKInformation Network 2026-02-13 10:54:53 21
NIF Web Services
 
Resource Report
Resource Website
NIF Web Services (RRID:SCR_001631) NIF Web Services data access protocol, software resource, web service THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23,2022. Representational State Transfer (REST) model based service for accessing a set of Neuroscience Information Framework (NIF) data through a fixed set of operations. They are defined by a WADL file which allows clients to automatically generate code for these services. The services (AnnotateService, FederationService, LdaService, LexicalService, LiteratureService, QueryService, SummaryService, VocabularyService) include the ability to: * Retrieve a federation summary, e.g., http://nif-services.neuinfo.org/servicesv1/v1/summary?q=* * Retrieve data records from a NIF federation source for a search, e.g., http://nif-services.neuinfo.org/servicesv1/v1/federation/data/nif-0000-00007-1?q=purkinje * Retrieve registry data records from NIF, e.g., http://nif-services.neuinfo.org/servicesv1/v1/federation/data/nlx_144509-1?q=miame * Retrieve a complete search summary, e.g., http://nif-services.neuinfo.org/servicesv1/v1/federation/search?q=cortex * Retrieve NIF auto-complete suggestions, e.g., http://nif-services.neuinfo.org/servicesv1/v1/vocabulary?prefix=hippo * Use the NIF annotator for arbitrary text, e.g., http://nif-services.neuinfo.org/servicesv1/v1/annotate?content=The%20cerebellum%20is%20a%20wonderful%20thing These services are documented for developers in the WADL file (and client stubs should have the comments embedded in them). Visit, http://nif-services.neuinfo.org/servicesv1/ for more information rest, data sharing, wadl is used by: NIF Data Federation
is related to: SciCrunch Registry
is related to: NIF Literature
is related to: OntoQuest
has parent organization: Neuroscience Information Framework
THIS RESOURCE IS NO LONGER IN SERVICE nlx_153899 SCR_001631 Neuroscience Information Framework Web Services 2026-02-13 10:54:53 0
ASAP
 
Resource Report
Resource Website
50+ mentions
ASAP (RRID:SCR_001849) ASAP data repository, storage service resource, data or information resource, service resource, database Database and web interface developed to store, update and distribute genome sequence data and gene expression data. ASAP was designed to facilitate ongoing community annotation of genomes and to grow with genome projects as they move from the preliminary data stage through post-sequencing functional analysis. The ASAP database includes multiple genome sequences at various stages of analysis, and gene expression data from preliminary experiments. Use of some of this preliminary data is conditional, and it is the users responsibility to read the data release policy and to verify that any use of specific data obtained through ASAP is consistent with this policy. There are four main routes to viewing the information in ASAP: # a summary page, # a form to query the genome annotations, # a form to query strain collections, and # a form to query the experimental data. Navigational buttons appear on every page allowing users to jump to any of these four points., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. gene expression, genome, genome sequence, multiple genome sequence, post sequencing functional analysis, preliminary experiment, blast, annotation, data analysis service is used by: NIF Data Federation
is listed by: SoftCite
is related to: AmiGO
has parent organization: University of Wisconsin-Madison; Wisconsin; USA
USDA 2001-52100-11316;
NIGMS GM62994-02;
NIGMS GM35682-15A1
PMID:12519969 Free, Freely available nif-0000-02571 https://omictools.com/asap-3-tool SCR_001849 A Systematic Annotation Package for Community Analysis of Genome, ASAP: a systematic annotation package for community analysis of genomes, A systematic annotation package for community analysis of genomes 2026-02-13 10:54:56 53
Rafael Yustes Laboratory
 
Resource Report
Resource Website
Rafael Yustes Laboratory (RRID:SCR_001845) Yuste Lab image collection, portal, laboratory portal, data or information resource, organization portal, database Laboratory that aims to understand the function of the cortical microcircuit by reverse-engineering of the cortical microcircuit using the mouse neocortex in vitro and in vivo as their experimental preparations. The techniques applied are electrophysiology, anatomy, and a variety of optical methods, including infrared-DIC, voltage- and ion-sensitive dye imaging with confocal, two-photon and second harmonic microscopy. They also use laser uncaging, biolistics, electroporation, electron microscopy and numerical simulations, and make extensive use of genetically modified mouse strains. They focus is on two major questions: (1) What is the function of dendritic spines? (2) What are the multicellular patterns of activity under spontaneous or evoked activation of the circuit? Resources include: * Cell Reconstructions: Cell Database, PDF Images, .DAT Files * Circuit Diagrams: Full Circuit Diagram, Inhibitory Circuit Diagram, Excitatory Circuit Diagram, Simplified Circuit Diagram, Layer to Layer Simplified Circuit, Circuit diagram references electron microscopy, electrophoration, electrophysiology, anatomy, biolistics, circuit, confocal, cortical, infrared-dic, ion sensitive dye imaging, voltage sensitive dye imaging, microcircuit, microscopy, mouse, multicellular, neocortex, optical method, second harmonic, two-photon, laser uncaging, cortical circuit, dendritic spine, cortical microcircuit, canonical microcircuit, cell reconstruction, cell, image, inhibitory circuit, excitatory circuit is used by: NIF Data Federation
has parent organization: Columbia University; New York; USA
Free, Freely available nif-0000-10407 SCR_001845 Rafael Yuste''s Laboratory, Cortical Circuits and Dendritic Spines 2026-02-13 10:54:56 0
AutDB
 
Resource Report
Resource Website
10+ mentions
AutDB (RRID:SCR_001872) AutDB data repository, storage service resource, data or information resource, service resource, database Curated public database for autism research built on information extracted from the studies on molecular genetics and biology of Autism Spectrum Disorders (ASD). The genetic information includes data from linkage and association studies, cytogenetic abnormalities, and specific mutations associated with ASD. New gene submissions are welcome. Modules: * Human Gene: thoroughly annotated list of genes that have been studied in the context of autism, with information on the genes themselves, relevant references from the literature, and the nature of the evidence. Uniquely, SFARI Gene incorporates information on both common and rare variants. * Animal Model: information about lines of genetically modified mice that represent potential models of autism. This information includes the nature of the targeting construct, the background strain and, most importantly, a thorough summary of the phenotypic features of the mice that are most relevant to autism. * Protein Interaction (PIN): compilation of all known direct protein interactions for those gene products implicated in autism. It presents both graphical and tabular views of interactomes, highlighting connections between autism candidate genes. Each protein interaction is manually verified by consultation with the primary reference. * Copy Number Variant (CNV): a parallel resource providing genetic information about all known copy number variants linked to autism. * Gene Scoring: includes a "score" for each autism candidate gene, based on an assessment of the strength of human genetic evidence. duplication, gene, genetic syndrome, genetic variation, allelic, autism, autism spectrum disorder, deletion, molecular function, molecular genetics, single-gene disruption, genetic association, genetic variation, allelic variant, copy number variant, cytogenetic, disruption, idiopathic asd, monogenic, mutation, polymorphism, human, animal model, mouse, protein interaction, sfari gene, phenotype, protein interaction, gene scoring, systems biology is listed by: NIF Data Federation
is listed by: 3DVC
is related to: Integrated Manually Extracted Annotation
has parent organization: SFARI - Simons Foundation Autism Research Initiative
Autism Spectrum Disorder, Autism MindSpec: Informatics for Neurodevelopmental Conditions PMID:19015121 Free, Freely available nif-0000-02587 http://www.mindspec.org/products/autdb/
https://gene.sfari.org/autdb/
http://autism.mindspec.org/autdb/ SCR_001872 AutDB - An Interface to Autism Research, Simons Foundation Autism Research Initiative Gene: Autism Database, SFARI Gene: AutDB, SFARI Gene, AutDB: a Genetic Database for Autism Spectrum Disorders 2026-02-13 10:54:56 40
Addgene
 
Resource Report
Resource Website
10000+ mentions
Addgene (RRID:SCR_002037) material storage repository, storage service resource, portal, data or information resource, organization portal, service resource Non-profit plasmid repository dedicated to helping scientists around the world share high-quality plasmids. Facilitates archiving and distributing DNA-based research reagents and associated data to scientists worldwide. Repository contains over 65,000 plasmids, including special collections on CRISPR, fluorescent proteins, and ready-to-use viral preparations. There is no cost for scientists to deposit plasmids, which saves time and money associated with shipping plasmids themselves. All plasmids are fully sequenced for validation and sequencing data is openly available. We handle the appropriate Material Transfer Agreements (MTA) with institutions, facilitating open exchange and offering intellectual property and liability protection for depositing scientists. Furthermore, we curate free educational resources for the scientific community including a blog, eBooks, video protocols, and detailed molecular biology resources. RIN, Resource Information Network, plasmid, molecular biology, sequence alignment, repository, bio.tools, FASEB list, RRID Community Authority uses: GenomeCompiler
is used by: NIF Data Federation
is used by: NIDDK Information Network (dkNET)
is used by: Structural Genomics Consortium
is used by: ZCre
is listed by: One Mind Biospecimen Bank Listing
is listed by: DataCite
is listed by: re3data.org
is listed by: bio.tools
is listed by: Debian
is listed by: Resource Information Network
is related to: zfishbook
is related to: GenomeCompiler
is related to: Phoenix
is related to: Integrated Manually Extracted Annotation
is related to: Genetic Tools Atlas
is parent organization of: Vector Database
Fees collected from plasmid sales support operation of the repository DOI:10.1093/nar/gku893 Free (deposit of plasmids), Limited (Some available to academic and non-profits, For-profit entities, Commercial license), Material Transfer Agreement, Non-commercial, Acknowledgement required, Copyrighted, For informational purposes only, Commercial with written consent, The community can contribute to this resource ISNI: 0000 0004 5912 0787, Wikidata: Q4681063, grid.482682.2, biotools:Addgene, nif-0000-11872 https://ror.org/01nn1pw54
https://bio.tools/Addgene
SCR_002037 Addgene Repository, Addgene Plasmid Database 2026-02-13 10:54:58 50586
Candida Genome Database
 
Resource Report
Resource Website
100+ mentions
Candida Genome Database (RRID:SCR_002036) CGD, CGD LOCUS, CGD REF data repository, storage service resource, data or information resource, service resource, database Database of genetic and molecular biological information about Candida albicans. Contains information about genes and proteins, descriptions and classifications of their biological roles, molecular functions, and subcellular localizations, gene, protein, and chromosome sequence information, tools for analysis and comparison of sequences and links to literature information. Each CGD gene or open reading frame has an individual Locus Page. Genetic loci that are not tied to DNA sequence also have Locus Pages. Provides Gene Ontology, GO, to all its users. Three ontologies that comprise GO (Molecular Function, Cellular Component, and Biological Process) are used by multiple databases to annotate gene products, so that this common vocabulary can be used to compare gene products across species. Development of ontologies is ongoing in order to incorporate new information. Data submissions are welcome. protein, chromosome, classification, gene, genome, candidiasis, thrush, yeast, yeast gene, yeast genome, candida albicans, candida glabrata, data analysis service, biological role, molecular function, subcellular localization, chromosome sequence, bio.tools, FASEB list is used by: NIF Data Federation
is listed by: bio.tools
is listed by: Debian
is related to: AmiGO
is related to: ASPGD
is related to: Gene Ontology
has parent organization: Stanford University School of Medicine; California; USA
NIDCR DE015873 PMID:19808938 Free, Available for download, Freely available nif-0000-02634, biotools:cgd https://bio.tools/cgd SCR_002036 2026-02-13 10:54:58 472
NIH VideoCasting
 
Resource Report
Resource Website
1+ mentions
NIH VideoCasting (RRID:SCR_001885) VideoCast data or information resource, podcast, narrative resource, video resource VideoCasting of special NIH events, seminars, conferences, meetings and lectures available to viewers on the NIH network and the Internet from the VideoCast web site. VideoCasting is the method of electronically streaming digitally encoded video and audio data from a server to a client. VideoCast is often referred to as streaming video. Streaming files are not downloaded, but rather are broadcast in a manner similar to television broadcasts. The videos are processed by a compression program into a streaming format and delivered in a staggered fashion to minimize impact upon the network and maximize the experience of the content for the viewer. When users request a streaming file they will receive an initial burst of data after a short delay (file latency). While content is being viewed, the streaming server machine and software continues to stream data in such a manner that the viewer experiences no break in the content. CIT can broadcast your seminar, conference or meeting live to a world-wide audience over the Internet as a real-time streaming video. The event can be recorded and made available for viewers to watch at their convenience as an on-demand video or a downloadable podcast. CIT can also broadcast NIH-only or HHS-only content. event, seminar, conference, meeting, lecture, multimedia is used by: NIF Data Federation
is used by: Integrated Videos
has parent organization: National Institutes of Health
NIH Public, The community can contribute to this resource nif-0000-10454 SCR_001885 NIH VideoCasts, NIH VideoCasting and Podcasting, NIH VideoCasting Podcasting, NIH VideoCast, NIH Videos 2026-02-13 10:54:56 2
NIDA Data Share
 
Resource Report
Resource Website
10+ mentions
NIDA Data Share (RRID:SCR_002002) data repository, storage service resource, catalog, data or information resource, service resource, database Website which allows data from completed clinical trials to be distributed to investigators and public. Researchers can download de-identified data from completed NIDA clinical trial studies to conduct analyses that improve quality of drug abuse treatment. Incorporates data from Division of Therapeutics and Medical Consequences and Center for Clinical Trials Network. drug of abuse, clinical, data, data sharing, human, clinical trial, experimental protocol, addiction, drug, addiction, data set, substance abuse is used by: NIF Data Federation
is used by: Integrated Datasets
is used by: NIH Heal Project
is recommended by: National Library of Medicine
is recommended by: BRAIN Initiative
is listed by: re3data.org
is related to: NIDA Networking Project: Facilitating information exchange and research collaboration
is related to: Integrated Manually Extracted Annotation
has parent organization: National Drug Abuse Treatment Clinical Trials Network
NIDA Restricted nif-0000-21981 http://www.ctndatashare.org/ SCR_002002 NIDA Clinical Trials Data Share, CTN database, CTN Data Share, NIDA CTN Data Share 2026-02-13 10:54:57 18
Brain Machine Interface Platform
 
Resource Report
Resource Website
Brain Machine Interface Platform (RRID:SCR_001813) BMI PF, BMI-PF data repository, storage service resource, software repository, bibliography, data or information resource, service resource, software resource, database Databases of accumulating BMI (Brain Machine Interfaces)-related experimental data, mathematical models, and tools generated in neuroscience, computational theory, and robotics. Databases include: # Database of BMI (Brain Machine Interfaces)-related papers: More than 3500 BMI-related papers are registered. Each paper has original tags, for example, recording method and subject, for easy searching. # Database of original contents: BMI-related materials (Movie, Picture, Data, Program) provided by scientists. # Database of BMI-related research sites: 185 BMI-related research sites in the world (university, institute and company) are registered. The research site can be searched either by the location using clickable map or by the field of interest. # Database of BMI-related materials: Links to BMI-related materials (Movie, Picture, Document, Data, Program) are listed. You can easily find materials of your interest since each material is classified into research field. # BMI-related column: The columns are written by researchers specialized in BMI. Original contents include: * Neuronal activity during performance of a memory-guided movement * Reconstructed visual images from human fMRI activity * fMRI data and program for visual image reconstruction * Brain sections of monkeys, stained for several gene markers * Cortical Box Method: The Cortical box method is an analytical method that standardizes the serial coronal sections of rodent cortex for quantitative analysis. * Multineuron activity in monkey prefrontal cortex * Monkey Atlas: **Brain sections of monkeys, stained for AChE, ER81 mRNA and Sema3E mRNA - These pictures are low-resolution photos of serial brain sections of monkeys, stained for AChE as well as for ER81 and Sema3E mRNAs. The compressed file contains JPEG photos and html files for web browser navigation. Other materials are available at our website BraInSitu dedicated for in situ hybridization resources for brains. BraInSitu http://www.nibb.ac.jp/brish/indexE.html ** MRI Brain Atlas of Japanese Snow Monkey (Macaca Fuscata) at different ages - MRI Brain Atlas of Japanese Snow Monkey (Macaca Fuscata) at different ages ** The Stereotaxic MRI Brain Atlas of Japanese Snow Monkey - The Stereotaxic MRI Brain Atlas of Japanese Snow Monkey * Monkey M1 BMI ** m-file for checking the results of wrist angle estimation- This program is m-file to train the relationship between joint angles and EMG signals using artificial neural network. The input signals are four EMG signals and the output signals are joint angles of wrist, such as flexion/extension, radial deviation/uln ** m-file for training of wrist angle estimation -This program is m-file to train the relationship between joint angles and EMG signals using artificial neural network. The input signals are four EMG signals and the output signals are joint angles of wrist, such as flexion/extension, radial deviation/ulnar deviation.ar deviation. ** M1 Neuronal Activity during monkey performing a motor task - video/x-ms-wmv ** Muscle tension - To estimate muscle tension from raw emg signal ** raw EMG signal - Raw EMG signal for 5 seconds ** training data of wrist angle and emg signal - This program is m-file to train the relationship between joint angles and EMG signals using artificial neural network. The input signals are four EMG signals and the output signals are joint angles of wrist, such as flexion/extension, radial deviation/ulnar deviation. ** Weight file of neural network - This program is m-file to train the relationship between joint angles and EMG signals using artificial neural network. The input signals are four EMG signals and the output signals are joint angles of wrist, such as flexion/extension, radial deviation/ulnar deviation. * Multineuron activity in monkey prefrontal cortex: Multineuron activity in monkey prefrontal cortex recorded by 3 tetrodes. Vertical 4 lines indicate one tetrode. Adjacent tetrodes are around 500 micron apart to each other. experimental data, brain, collaboration, computational theory, cortex, mathematical model, model, monkey, motor, neuroscience, paper, physiology, robotics, rodent, sensor, signal processing, theory, tool, video, fmri, human, atlas is used by: NIF Data Federation
is related to: Integrated Software
has parent organization: RIKEN Brain Science Institute
Free, Freely available nif-0000-10378 SCR_001813 BMI (Brain Machine Interface) Platform, BMI platform, BMI-platform, Brain Machine Interface Platform (BMI PF) 2026-02-13 10:54:55 0

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